RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 UQCRHP07919 91 aa21.6■■□□□ 1.05
SMPD4-202ENST00000409031 GPATCH3Q96I76 525 aa21.59■■□□□ 1.05
SMPD4-202ENST00000409031 CHMP4AQ9BY43 222 aa21.59■■□□□ 1.05
SMPD4-202ENST00000409031 ERCC6Q03468 1493 aa21.59■■□□□ 1.05
SMPD4-202ENST00000409031 SETQ01105 290 aaPredicted RBP21.58■■□□□ 1.05
SMPD4-202ENST00000409031 SAFB2Q14151 953 aaKnown RBP eCLIP21.58■■□□□ 1.05
SMPD4-202ENST00000409031 CCDC34Q96HJ3 373 aa21.58■■□□□ 1.05
SMPD4-202ENST00000409031 RUNDC1Q96C34 613 aa21.58■■□□□ 1.04
SMPD4-202ENST00000409031 IFT57Q9NWB7 429 aa21.57■■□□□ 1.04
SMPD4-202ENST00000409031 TERF2IPQ9NYB0 399 aa21.57■■□□□ 1.04
SMPD4-202ENST00000409031 HDAC5Q9UQL6 1122 aa21.57■■□□□ 1.04
SMPD4-202ENST00000409031 ARGLU1Q9NWB6 273 aaPredicted RBP21.56■■□□□ 1.04
SMPD4-202ENST00000409031 CDC45O75419 566 aa21.56■■□□□ 1.04
SMPD4-202ENST00000409031 SLC4A10Q6U841 1118 aa21.54■■□□□ 1.04
SMPD4-202ENST00000409031 RILPL2Q969X0 211 aa21.54■■□□□ 1.04
SMPD4-202ENST00000409031 NINLQ9Y2I6 1382 aa21.54■■□□□ 1.04
SMPD4-202ENST00000409031 ARAP1Q96P48 1450 aa21.54■■□□□ 1.04
SMPD4-202ENST00000409031 LETM1O95202 739 aaPredicted RBP21.53■■□□□ 1.04
SMPD4-202ENST00000409031 TSPY26PQ9H489 355 aa21.53■■□□□ 1.04
SMPD4-202ENST00000409031 API5Q9BZZ5 524 aaKnown RBP21.52■■□□□ 1.04
SMPD4-202ENST00000409031 HSP90B1P14625 803 aaKnown RBP21.52■■□□□ 1.04
SMPD4-202ENST00000409031 RABEP1Q15276 862 aa21.52■■□□□ 1.04
SMPD4-202ENST00000409031 CUX1P39880 1505 aa21.52■■□□□ 1.04
SMPD4-202ENST00000409031 SF3A1Q15459 793 aaKnown RBP21.52■■□□□ 1.04
SMPD4-202ENST00000409031 PRPF40AO75400 957 aaKnown RBP21.52■■□□□ 1.04
SMPD4-202ENST00000409031 SPAG9O60271 1321 aaKnown RBP21.52■■□□□ 1.03
SMPD4-202ENST00000409031 NOM1Q5C9Z4 860 aaKnown RBP21.51■■□□□ 1.03
SMPD4-202ENST00000409031 CLCN1P35523 988 aa21.51■■□□□ 1.03
SMPD4-202ENST00000409031 TAF3Q5VWG9 929 aa21.5■■□□□ 1.03
SMPD4-202ENST00000409031 CWC22Q9HCG8 908 aaKnown RBP21.5■■□□□ 1.03
SMPD4-202ENST00000409031 CCAR2Q8N163 923 aaKnown RBP21.49■■□□□ 1.03
SMPD4-202ENST00000409031 NBPF8Q3BBV2 869 aa21.49■■□□□ 1.03
SMPD4-202ENST00000409031 HOMER1Q86YM7 354 aa21.49■■□□□ 1.03
SMPD4-202ENST00000409031 H3BQV1 296 aa21.49■■□□□ 1.03
SMPD4-202ENST00000409031 IFFO2Q5TF58 517 aa21.49■■□□□ 1.03
SMPD4-202ENST00000409031 HNRNPMP52272 730 aaKnown RBP eCLIP21.48■■□□□ 1.031e-6■■■■□ 22.6
SMPD4-202ENST00000409031 CHMP4CQ96CF2 233 aa21.48■■□□□ 1.03
SMPD4-202ENST00000409031 ERICH3Q5RHP9 1530 aa21.48■■□□□ 1.03
SMPD4-202ENST00000409031 SMARCA4P51532 1647 aa21.47■■□□□ 1.03
SMPD4-202ENST00000409031 TDRD9Q8NDG6 1382 aaKnown RBP21.47■■□□□ 1.03
SMPD4-202ENST00000409031 ELL2O00472 640 aaPredicted RBP21.47■■□□□ 1.03
SMPD4-202ENST00000409031 CARMIL2Q6F5E8 1435 aa21.47■■□□□ 1.03
SMPD4-202ENST00000409031 K7ELQ4 463 aaPredicted RBP21.47■■□□□ 1.03
SMPD4-202ENST00000409031 MCM2P49736 904 aa21.47■■□□□ 1.03
SMPD4-202ENST00000409031 STK26Q9P289 416 aa21.47■■□□□ 1.03
SMPD4-202ENST00000409031 SASS6Q6UVJ0 657 aa21.46■■□□□ 1.03
SMPD4-202ENST00000409031 CWC15Q9P013 229 aaKnown RBP21.46■■□□□ 1.03
SMPD4-202ENST00000409031 NOC3LQ8WTT2 800 aaKnown RBP21.46■■□□□ 1.03
SMPD4-202ENST00000409031 ANO2Q9NQ90 1003 aa21.46■■□□□ 1.03
SMPD4-202ENST00000409031 HFM1A2PYH4 1435 aa21.46■■□□□ 1.03
SMPD4-202ENST00000409031 IGF1RP08069 1367 aa21.46■■□□□ 1.03
SMPD4-202ENST00000409031 SMC3Q9UQE7 1217 aa21.46■■□□□ 1.03
SMPD4-202ENST00000409031 MNS1Q8NEH6 495 aa21.45■■□□□ 1.02
SMPD4-202ENST00000409031 BCAR3O75815 825 aa21.45■■□□□ 1.02
SMPD4-202ENST00000409031 FAM184AQ8NB25 1140 aa21.45■■□□□ 1.02
SMPD4-202ENST00000409031 ROCK1Q13464 1354 aa21.45■■□□□ 1.02
SMPD4-202ENST00000409031 PPP2R1AP30153 589 aa21.44■■□□□ 1.02
SMPD4-202ENST00000409031 RUFY2Q8WXA3 655 aa21.44■■□□□ 1.02
SMPD4-202ENST00000409031 BICD2Q8TD16 824 aa21.44■■□□□ 1.02
SMPD4-202ENST00000409031 ZKSCAN1P17029 563 aaPredicted RBP21.43■■□□□ 1.02
SMPD4-202ENST00000409031 EFCAB2Q5VUJ9 269 aa21.42■■□□□ 1.02
SMPD4-202ENST00000409031 CHMP3Q9Y3E7 222 aa21.42■■□□□ 1.02
SMPD4-202ENST00000409031 TPD52L1Q16890 204 aaPredicted RBP21.41■■□□□ 1.02
SMPD4-202ENST00000409031 STAC3Q96MF2 364 aa21.41■■□□□ 1.02
SMPD4-202ENST00000409031 CASKIN1Q8WXD9 1431 aa21.41■■□□□ 1.02
SMPD4-202ENST00000409031 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.4■■□□□ 1.024e-10■■■■■ 33.4
SMPD4-202ENST00000409031 VPS37CA5D8V6 355 aaPredicted RBP21.4■■□□□ 1.02
SMPD4-202ENST00000409031 RIPK4P57078 832 aa21.4■■□□□ 1.02
SMPD4-202ENST00000409031 GCC1Q96CN9 775 aa21.39■■□□□ 1.01
SMPD4-202ENST00000409031 PDCL2Q8N4E4 241 aa21.39■■□□□ 1.01
SMPD4-202ENST00000409031 SOX12O15370 315 aa21.39■■□□□ 1.01
SMPD4-202ENST00000409031 TRAK1Q9UPV9 953 aa21.38■■□□□ 1.01
SMPD4-202ENST00000409031 TCP11L2Q8N4U5 519 aa21.38■■□□□ 1.01
SMPD4-202ENST00000409031 TRIM5Q9C035 493 aa21.38■■□□□ 1.01
SMPD4-202ENST00000409031 ACBD3Q9H3P7 528 aa21.37■■□□□ 1.01
SMPD4-202ENST00000409031 NCOA2Q15596 1464 aa21.37■■□□□ 1.01
SMPD4-202ENST00000409031 FYCO1Q9BQS8 1478 aa21.37■■□□□ 1.01
SMPD4-202ENST00000409031 PLEKHG5O94827 1062 aa21.37■■□□□ 1.01
SMPD4-202ENST00000409031 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.37■■□□□ 1.01
SMPD4-202ENST00000409031 PLPPR3Q6T4P5 718 aa21.36■■□□□ 1.01
SMPD4-202ENST00000409031 CCDC112Q8NEF3 446 aa21.36■■□□□ 1.01
SMPD4-202ENST00000409031 TBC1D2Q9BYX2 928 aa21.36■■□□□ 1.01
SMPD4-202ENST00000409031 NEK4P51957 841 aa21.36■■□□□ 1.01
SMPD4-202ENST00000409031 ATAD2BQ9ULI0 1458 aa21.36■■□□□ 1.01
SMPD4-202ENST00000409031 TPM1P09493 284 aa21.36■■□□□ 1.01
SMPD4-202ENST00000409031 HSP90B2PQ58FF3 399 aa21.36■■□□□ 1.01
SMPD4-202ENST00000409031 CCDC70Q6NSX1 233 aa21.35■■□□□ 1.01
SMPD4-202ENST00000409031 MCM5P33992 734 aa21.35■■□□□ 1.01
SMPD4-202ENST00000409031 PDS5BQ9NTI5 1447 aa21.34■■□□□ 1.01
SMPD4-202ENST00000409031 CT47B1P0C2W7 299 aaPredicted RBP21.33■■□□□ 1.01
SMPD4-202ENST00000409031 DIAPH1O60610 1272 aaKnown RBP21.33■■□□□ 1.01
SMPD4-202ENST00000409031 SKAP1Q86WV1 359 aa21.33■■□□□ 1.01
SMPD4-202ENST00000409031 CCDC73Q6ZRK6 1079 aa21.33■■□□□ 1
SMPD4-202ENST00000409031 XRCC6P12956 609 aaKnown RBP eCLIP21.32■■□□□ 1
SMPD4-202ENST00000409031 SLFN5Q08AF3 891 aa21.32■■□□□ 1
SMPD4-202ENST00000409031 MVPQ14764 893 aaKnown RBP21.32■■□□□ 1
SMPD4-202ENST00000409031 EVC2Q86UK5 1308 aa21.32■■□□□ 1
SMPD4-202ENST00000409031 DYNC1I1O14576 645 aa21.32■■□□□ 1
SMPD4-202ENST00000409031 CADPSQ9ULU8 1353 aa21.32■■□□□ 1
SMPD4-202ENST00000409031 GNAI1P63096 354 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms