RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 SLC52A1Q9NWF4 448 aa9.91□□□□□ -0.82
USP47-203ENST00000399455 SUPT6HQ7KZ85 1726 aaKnown RBP9.91□□□□□ -0.82
USP47-203ENST00000399455 DIAPH1O60610 1272 aaKnown RBP9.91□□□□□ -0.82
USP47-203ENST00000399455 NGEFQ8N5V2 710 aa9.91□□□□□ -0.82
USP47-203ENST00000399455 TRIM6-TRIM34B2RNG4 842 aa9.91□□□□□ -0.82
USP47-203ENST00000399455 TATP17735 454 aaPredicted RBP9.91□□□□□ -0.82
USP47-203ENST00000399455 MIER1Q8N108 512 aa9.91□□□□□ -0.82
USP47-203ENST00000399455 SCAPERQ9BY12 1400 aa9.91□□□□□ -0.82
USP47-203ENST00000399455 TRIM44Q96DX7 344 aaPredicted RBP9.91□□□□□ -0.82
USP47-203ENST00000399455 L3MBTL2Q969R5 705 aa9.9□□□□□ -0.82
USP47-203ENST00000399455 KIAA0586Q9BVV6 1533 aa9.9□□□□□ -0.82
USP47-203ENST00000399455 ANKRD50Q9ULJ7 1429 aa9.9□□□□□ -0.82
USP47-203ENST00000399455 NLRP6P59044 892 aa9.9□□□□□ -0.82
USP47-203ENST00000399455 C9orf78Q9NZ63 289 aaPredicted RBP9.9□□□□□ -0.82
USP47-203ENST00000399455 LRPPRCP42704 1394 aaKnown RBP9.9□□□□□ -0.82
USP47-203ENST00000399455 PLEKHO1Q53GL0 409 aaPredicted RBP9.9□□□□□ -0.83
USP47-203ENST00000399455 RASSF8Q8NHQ8 419 aa9.9□□□□□ -0.83
USP47-203ENST00000399455 CCER2I3L3R5 266 aa9.89□□□□□ -0.83
USP47-203ENST00000399455 TOM1L2Q6ZVM7 507 aa9.89□□□□□ -0.83
USP47-203ENST00000399455 NCOA2Q15596 1464 aa9.89□□□□□ -0.83
USP47-203ENST00000399455 EIF2S2P20042 333 aaKnown RBP9.89□□□□□ -0.83
USP47-203ENST00000399455 AKAP17AQ02040 695 aaKnown RBP9.89□□□□□ -0.83
USP47-203ENST00000399455 NLRP13Q86W25 1043 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 KIF3AQ9Y496 699 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 FGD6Q6ZV73 1430 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 SYNE3Q6ZMZ3 975 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 CCAR1Q8IX12 1150 aaKnown RBP9.88□□□□□ -0.83
USP47-203ENST00000399455 AFAP1Q8N556 730 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 RAD21O60216 631 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 SPG7Q9UQ90 795 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 PLB1Q6P1J6 1458 aa9.88□□□□□ -0.83
USP47-203ENST00000399455 C9orf84Q5VXU9 1444 aa9.87□□□□□ -0.83
USP47-203ENST00000399455 USP35Q9P2H5 1018 aa9.87□□□□□ -0.83
USP47-203ENST00000399455 RPGRIP1LQ68CZ1 1315 aa9.87□□□□□ -0.83
USP47-203ENST00000399455 PANK3Q9H999 370 aa9.87□□□□□ -0.83
USP47-203ENST00000399455 TROQ12816 1431 aaPredicted RBP9.87□□□□□ -0.83
USP47-203ENST00000399455 TPM4P67936 248 aa9.86□□□□□ -0.83
USP47-203ENST00000399455 NUTM2GQ5VZR2 741 aa9.86□□□□□ -0.83
USP47-203ENST00000399455 CCDC146Q8IYE0 955 aa9.86□□□□□ -0.83
USP47-203ENST00000399455 RBM42Q9BTD8 480 aaKnown RBP9.86□□□□□ -0.83
USP47-203ENST00000399455 PRM3Q9NNZ6 103 aa9.86□□□□□ -0.83
USP47-203ENST00000399455 ZNF692Q9BU19 519 aaPredicted RBP9.86□□□□□ -0.83
USP47-203ENST00000399455 PPP6R1Q9UPN7 881 aa9.86□□□□□ -0.83
USP47-203ENST00000399455 PPP4R2Q9NY27 417 aa9.86□□□□□ -0.83
USP47-203ENST00000399455 GRIN2AQ12879 1464 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 MYBBP1AQ9BQG0 1328 aaKnown RBP9.85□□□□□ -0.83
USP47-203ENST00000399455 RAPGEF3O95398 923 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 ADGRL1O94910 1474 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 RIC3Q7Z5B4 369 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 GAS2L2Q8NHY3 880 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 CNKSR2Q8WXI2 1034 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 SUPT16HQ9Y5B9 1047 aaKnown RBP9.85□□□□□ -0.83
USP47-203ENST00000399455 PTMSP20962 102 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 LRRC9Q6ZRR7 1453 aa9.85□□□□□ -0.83
USP47-203ENST00000399455 CSPP1Q1MSJ5 1256 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 TOM1O60784 492 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 DENND4BO75064 1496 aaPredicted RBP9.84□□□□□ -0.83
USP47-203ENST00000399455 PRDM11Q9NQV5 511 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 USP47Q96K76 1375 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 RUSC2Q8N2Y8 1516 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 ABCA10Q8WWZ4 1543 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 UNC13AQ9UPW8 1703 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 CABP4P57796 275 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 TSPYL4Q9UJ04 414 aa9.84□□□□□ -0.83
USP47-203ENST00000399455 HFM1A2PYH4 1435 aa9.83□□□□□ -0.84
USP47-203ENST00000399455 ST20-MTHFSA0A0A6YYL1 179 aa9.83□□□□□ -0.84
USP47-203ENST00000399455 BICRAQ9NZM4 1560 aa9.83□□□□□ -0.84
USP47-203ENST00000399455 WDHD1O75717 1129 aaPredicted RBP9.82□□□□□ -0.84
USP47-203ENST00000399455 RTEL1-TNFRSF6BF6WH68 1400 aa9.82□□□□□ -0.84
USP47-203ENST00000399455 PLCB2Q00722 1185 aa9.82□□□□□ -0.84
USP47-203ENST00000399455 ERICH2A1L162 156 aa9.82□□□□□ -0.84
USP47-203ENST00000399455 G3BP1Q13283 466 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP47-203ENST00000399455 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
USP47-203ENST00000399455 DNAJC5BQ9UF47 199 aa9.82□□□□□ -0.84
USP47-203ENST00000399455 RCAN3Q9UKA8 241 aa9.82□□□□□ -0.84
USP47-203ENST00000399455 DHX16O60231 1041 aaKnown RBP9.81□□□□□ -0.84
USP47-203ENST00000399455 CCDC43Q96MW1 224 aaKnown RBP9.81□□□□□ -0.84
USP47-203ENST00000399455 DAPK1P53355 1430 aa9.81□□□□□ -0.84
USP47-203ENST00000399455 PRAM1Q96QH2 718 aa9.81□□□□□ -0.84
USP47-203ENST00000399455 HSP90AB4PQ58FF6 505 aa9.81□□□□□ -0.84
USP47-203ENST00000399455 GNL3LQ9NVN8 582 aaKnown RBP9.81□□□□□ -0.84
USP47-203ENST00000399455 ERBINQ96RT1 1412 aa9.81□□□□□ -0.84
USP47-203ENST00000399455 IFIT2P09913 472 aaKnown RBP9.8□□□□□ -0.84
USP47-203ENST00000399455 RUFY2Q8WXA3 655 aa9.8□□□□□ -0.84
USP47-203ENST00000399455 KCNH5Q8NCM2 988 aa9.8□□□□□ -0.84
USP47-203ENST00000399455 KIF16BQ96L93 1317 aa9.8□□□□□ -0.84
USP47-203ENST00000399455 GNAI1P63096 354 aa9.8□□□□□ -0.84
USP47-203ENST00000399455 PNISRQ8TF01 805 aaKnown RBP9.8□□□□□ -0.84
USP47-203ENST00000399455 B4GALNT3Q6L9W6 998 aa9.8□□□□□ -0.84
USP47-203ENST00000399455 NGLY1Q96IV0 654 aa9.8□□□□□ -0.84
USP47-203ENST00000399455 ZNF644Q9H582 1327 aaPredicted RBP9.8□□□□□ -0.84
USP47-203ENST00000399455 APPP05067 770 aa9.8□□□□□ -0.84
USP47-203ENST00000399455 E9PSI1 815 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 DNTTIP2Q5QJE6 756 aaKnown RBP9.79□□□□□ -0.84
USP47-203ENST00000399455 CEP89Q96ST8 783 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 MSH6P52701 1360 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 NBR1Q14596 966 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 CPLX2Q6PUV4 134 aaKnown RBP9.79□□□□□ -0.84
USP47-203ENST00000399455 DRC7Q8IY82 874 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 DDX54Q8TDD1 881 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms