RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 CCDC39Q9UFE4 941 aa11.72□□□□□ -0.53
SMAD9-203ENST00000399275 KCNJ4P48050 445 aa11.72□□□□□ -0.53
SMAD9-203ENST00000399275 RUFY1Q96T51 708 aa11.72□□□□□ -0.53
SMAD9-203ENST00000399275 ST20-MTHFSA0A0A6YYL1 179 aa11.71□□□□□ -0.53
SMAD9-203ENST00000399275 AXDND1Q5T1B0 1012 aaPredicted RBP11.71□□□□□ -0.53
SMAD9-203ENST00000399275 U2SURPO15042 1029 aaKnown RBP11.71□□□□□ -0.53
SMAD9-203ENST00000399275 INCENPQ9NQS7 918 aa11.71□□□□□ -0.53
SMAD9-203ENST00000399275 HOMER1Q86YM7 354 aa11.71□□□□□ -0.54
SMAD9-203ENST00000399275 KIAA0754O94854 1291 aa11.7□□□□□ -0.54
SMAD9-203ENST00000399275 MYOM3Q5VTT5 1437 aa11.7□□□□□ -0.54
SMAD9-203ENST00000399275 TDO2P48775 406 aa11.7□□□□□ -0.54
SMAD9-203ENST00000399275 AKNAQ7Z591 1439 aa11.7□□□□□ -0.54
SMAD9-203ENST00000399275 KIF16BQ96L93 1317 aa11.7□□□□□ -0.54
SMAD9-203ENST00000399275 FAM193AP78312 1265 aa11.69□□□□□ -0.54
SMAD9-203ENST00000399275 MIA2Q96PC5 1412 aa11.69□□□□□ -0.54
SMAD9-203ENST00000399275 IFT57Q9NWB7 429 aa11.69□□□□□ -0.54
SMAD9-203ENST00000399275 ISY1Q9ULR0 285 aaKnown RBP11.69□□□□□ -0.54
SMAD9-203ENST00000399275 GOLGA6L19H0YKK7 550 aa11.68□□□□□ -0.54
SMAD9-203ENST00000399275 LMOD3Q0VAK6 560 aa11.68□□□□□ -0.54
SMAD9-203ENST00000399275 NASPP49321 788 aaPredicted RBP11.68□□□□□ -0.54
SMAD9-203ENST00000399275 CBX1P83916 185 aa11.68□□□□□ -0.54
SMAD9-203ENST00000399275 PANK3Q9H999 370 aa11.68□□□□□ -0.54
SMAD9-203ENST00000399275 FRAT2O75474 233 aaPredicted RBP11.67□□□□□ -0.54
SMAD9-203ENST00000399275 ERCC4Q92889 916 aaPredicted RBP11.67□□□□□ -0.54
SMAD9-203ENST00000399275 FOXD4L1Q9NU39 408 aa11.67□□□□□ -0.54
SMAD9-203ENST00000399275 SMC4Q9NTJ3 1288 aa11.67□□□□□ -0.54
SMAD9-203ENST00000399275 PES1O00541 588 aaKnown RBP11.67□□□□□ -0.54
SMAD9-203ENST00000399275 ST18O60284 1047 aa11.67□□□□□ -0.54
SMAD9-203ENST00000399275 KANK1Q14678 1352 aa11.67□□□□□ -0.54
SMAD9-203ENST00000399275 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.67□□□□□ -0.54
SMAD9-203ENST00000399275 TMCO5BA8MYB1 307 aa11.67□□□□□ -0.54
SMAD9-203ENST00000399275 CCDC146Q8IYE0 955 aa11.67□□□□□ -0.54
SMAD9-203ENST00000399275 TRERF1Q96PN7 1200 aa11.66□□□□□ -0.54
SMAD9-203ENST00000399275 CASKIN1Q8WXD9 1431 aa11.66□□□□□ -0.54
SMAD9-203ENST00000399275 TIGD1Q96MW7 591 aa11.66□□□□□ -0.54
SMAD9-203ENST00000399275 ESPNB1AK53 854 aa11.65□□□□□ -0.54
SMAD9-203ENST00000399275 NEXNQ0ZGT2 675 aa11.65□□□□□ -0.54
SMAD9-203ENST00000399275 CADPSQ9ULU8 1353 aa11.65□□□□□ -0.54
SMAD9-203ENST00000399275 BECN2A8MW95 431 aa11.65□□□□□ -0.54
SMAD9-203ENST00000399275 PDCL2Q8N4E4 241 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 FYCO1Q9BQS8 1478 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 CCDC173Q0VFZ6 552 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 TDRD9Q8NDG6 1382 aaKnown RBP11.64□□□□□ -0.55
SMAD9-203ENST00000399275 GOLGA6L7A0A1B0GV03 622 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 SKIDA1Q1XH10 827 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 CT47A1Q5JQC4 288 aaPredicted RBP11.64□□□□□ -0.55
SMAD9-203ENST00000399275 U2AF1L5P0DN76 240 aaPredicted RBP11.64□□□□□ -0.55
SMAD9-203ENST00000399275 U2AF1Q01081 240 aaKnown RBP eCLIP11.64□□□□□ -0.55
SMAD9-203ENST00000399275 HFM1A2PYH4 1435 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 TIAM1Q13009 1591 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 PRXQ9BXM0 1461 aa11.64□□□□□ -0.55
SMAD9-203ENST00000399275 ZRSR2Q15696 482 aaKnown RBP11.64□□□□□ -0.55
SMAD9-203ENST00000399275 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.64□□□□□ -0.55
SMAD9-203ENST00000399275 IGF1RP08069 1367 aa11.63□□□□□ -0.55
SMAD9-203ENST00000399275 ZKSCAN2Q63HK3 967 aa11.63□□□□□ -0.55
SMAD9-203ENST00000399275 TICAM2Q86XR7 235 aa11.63□□□□□ -0.55
SMAD9-203ENST00000399275 CLUAP1Q96AJ1 413 aa11.63□□□□□ -0.55
SMAD9-203ENST00000399275 COG6Q9Y2V7 657 aa11.63□□□□□ -0.55
SMAD9-203ENST00000399275 TRAK2O60296 914 aa11.63□□□□□ -0.55
SMAD9-203ENST00000399275 CENPHQ9H3R5 247 aa11.63□□□□□ -0.55
SMAD9-203ENST00000399275 DHX37Q8IY37 1157 aaKnown RBP11.62□□□□□ -0.55
SMAD9-203ENST00000399275 PNISRQ8TF01 805 aaKnown RBP11.62□□□□□ -0.55
SMAD9-203ENST00000399275 RBM28Q9NW13 759 aaKnown RBP11.62□□□□□ -0.55
SMAD9-203ENST00000399275 CCDC144AA2RUR9 1427 aa11.62□□□□□ -0.55
SMAD9-203ENST00000399275 CCDC34Q96HJ3 373 aa11.62□□□□□ -0.55
SMAD9-203ENST00000399275 WASHC2CQ9Y4E1 1318 aa11.62□□□□□ -0.55
SMAD9-203ENST00000399275 GOLGA6L10A6NI86 522 aa11.61□□□□□ -0.55
SMAD9-203ENST00000399275 LETM1O95202 739 aaPredicted RBP11.61□□□□□ -0.55
SMAD9-203ENST00000399275 NCBP3Q53F19 620 aaKnown RBP11.61□□□□□ -0.55
SMAD9-203ENST00000399275 PSMD1Q99460 953 aa11.61□□□□□ -0.55
SMAD9-203ENST00000399275 C22orf23Q9BZE7 217 aa11.61□□□□□ -0.55
SMAD9-203ENST00000399275 SARNPP82979 210 aaKnown RBP11.61□□□□□ -0.55
SMAD9-203ENST00000399275 ESF1Q9H501 851 aaKnown RBP11.61□□□□□ -0.55
SMAD9-203ENST00000399275 NPM1P06748 294 aaKnown RBP eCLIP11.6□□□□□ -0.55
SMAD9-203ENST00000399275 TMX4Q9H1E5 349 aaPredicted RBP11.6□□□□□ -0.55
SMAD9-203ENST00000399275 NUCB2P80303 420 aa11.6□□□□□ -0.55
SMAD9-203ENST00000399275 NCOA2Q15596 1464 aa11.6□□□□□ -0.55
SMAD9-203ENST00000399275 TSR1Q2NL82 804 aaKnown RBP11.59□□□□□ -0.55
SMAD9-203ENST00000399275 DDX19BQ9UMR2 479 aa11.59□□□□□ -0.55
SMAD9-203ENST00000399275 TPD52L1Q16890 204 aaPredicted RBP11.59□□□□□ -0.55
SMAD9-203ENST00000399275 NINLQ9Y2I6 1382 aa11.59□□□□□ -0.55
SMAD9-203ENST00000399275 FGD5Q6ZNL6 1462 aa11.59□□□□□ -0.55
SMAD9-203ENST00000399275 POGKQ9P215 609 aa11.58□□□□□ -0.56
SMAD9-203ENST00000399275 TOP2BQ02880 1626 aa11.58□□□□□ -0.56
SMAD9-203ENST00000399275 CARMIL2Q6F5E8 1435 aa11.58□□□□□ -0.56
SMAD9-203ENST00000399275 SETSIPP0DME0 302 aa11.58□□□□□ -0.56
SMAD9-203ENST00000399275 CEP89Q96ST8 783 aa11.58□□□□□ -0.56
SMAD9-203ENST00000399275 TPM1P09493 284 aa11.58□□□□□ -0.56
SMAD9-203ENST00000399275 FOXD4L5Q5VV16 416 aaPredicted RBP11.58□□□□□ -0.56
SMAD9-203ENST00000399275 FOXD4L4Q8WXT5 416 aaPredicted RBP11.58□□□□□ -0.56
SMAD9-203ENST00000399275 MAP3K1Q13233 1512 aa11.58□□□□□ -0.56
SMAD9-203ENST00000399275 VGLL3A8MV65 326 aa11.57□□□□□ -0.56
SMAD9-203ENST00000399275 APAF1O14727 1248 aa11.57□□□□□ -0.56
SMAD9-203ENST00000399275 CCDC184Q52MB2 194 aa11.57□□□□□ -0.56
SMAD9-203ENST00000399275 FANCD2Q9BXW9 1451 aa11.57□□□□□ -0.56
SMAD9-203ENST00000399275 MPHOSPH10O00566 681 aaKnown RBP11.57□□□□□ -0.56
SMAD9-203ENST00000399275 DDX11Q96FC9 970 aa11.57□□□□□ -0.56
SMAD9-203ENST00000399275 CT47B1P0C2W7 299 aaPredicted RBP11.57□□□□□ -0.56
SMAD9-203ENST00000399275 IBSPP21815 317 aaPredicted RBP11.57□□□□□ -0.56
SMAD9-203ENST00000399275 TTLL5Q6EMB2 1281 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms