RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 RPGRIP1LQ68CZ1 1315 aa18.03■□□□□ 0.48
TRIM39-204ENST00000396548 ADAMTSL3P82987 1691 aa18.02■□□□□ 0.48
TRIM39-204ENST00000396548 USP47Q96K76 1375 aa18.01■□□□□ 0.47
TRIM39-204ENST00000396548 PIK3C2GO75747 1445 aa18■□□□□ 0.47
TRIM39-204ENST00000396548 ZFYVE9O95405 1425 aa18■□□□□ 0.47
TRIM39-204ENST00000396548 NBPF1Q3BBV0 1214 aa18■□□□□ 0.47
TRIM39-204ENST00000396548 ROCK2O75116 1388 aaKnown RBP18■□□□□ 0.47
TRIM39-204ENST00000396548 ADGRF5Q8IZF2 1346 aa18■□□□□ 0.47
TRIM39-204ENST00000396548 A2ML1A8K2U0 1454 aa17.99■□□□□ 0.47
TRIM39-204ENST00000396548 SETBP1Q9Y6X0 1596 aa17.98■□□□□ 0.47
TRIM39-204ENST00000396548 UBR1Q8IWV7 1749 aa17.98■□□□□ 0.47
TRIM39-204ENST00000396548 CARD11Q9BXL7 1154 aa17.97■□□□□ 0.47
TRIM39-204ENST00000396548 TNRQ92752 1358 aa17.95■□□□□ 0.46
TRIM39-204ENST00000396548 ADGRB1O14514 1584 aa17.95■□□□□ 0.46
TRIM39-204ENST00000396548 C11orf95C9JLR9 678 aaPredicted RBP17.95■□□□□ 0.46
TRIM39-204ENST00000396548 ESF1Q9H501 851 aaKnown RBP17.95■□□□□ 0.46
TRIM39-204ENST00000396548 RIMS1Q86UR5 1692 aaKnown RBP17.94■□□□□ 0.46
TRIM39-204ENST00000396548 WASHC2AQ641Q2 1341 aa17.94■□□□□ 0.46
TRIM39-204ENST00000396548 CHGAP10645 457 aaKnown RBP17.93■□□□□ 0.46
TRIM39-204ENST00000396548 NLRP1Q9C000 1473 aa17.92■□□□□ 0.46
TRIM39-204ENST00000396548 MYO3AQ8NEV4 1616 aa17.91■□□□□ 0.46
TRIM39-204ENST00000396548 SETD1AO15047 1707 aaKnown RBP17.9■□□□□ 0.46
TRIM39-204ENST00000396548 SCAF11Q99590 1463 aaKnown RBP17.9■□□□□ 0.46
TRIM39-204ENST00000396548 CCDC7Q96M83 1385 aa17.9■□□□□ 0.46
TRIM39-204ENST00000396548 C14orf93Q9H972 538 aaKnown RBP17.9■□□□□ 0.46
TRIM39-204ENST00000396548 CFAP70Q5T0N1 1121 aa17.89■□□□□ 0.45
TRIM39-204ENST00000396548 CEBPAP49715 358 aaPredicted RBP17.88■□□□□ 0.45
TRIM39-204ENST00000396548 NRXN3Q9Y4C0 1643 aa17.88■□□□□ 0.45
TRIM39-204ENST00000396548 ASXL1Q8IXJ9 1541 aa17.88■□□□□ 0.45
TRIM39-204ENST00000396548 ST20-MTHFSA0A0A6YYL1 179 aa17.88■□□□□ 0.45
TRIM39-204ENST00000396548 VGFO15240 615 aaPredicted RBP17.88■□□□□ 0.45
TRIM39-204ENST00000396548 KIF7Q2M1P5 1343 aa17.86■□□□□ 0.45
TRIM39-204ENST00000396548 TESK2Q96S53 571 aa17.86■□□□□ 0.45
TRIM39-204ENST00000396548 RIMS2Q9UQ26 1411 aa17.86■□□□□ 0.45
TRIM39-204ENST00000396548 ALKQ9UM73 1620 aa17.85■□□□□ 0.45
TRIM39-204ENST00000396548 DDX10Q13206 875 aaKnown RBP17.84■□□□□ 0.45
TRIM39-204ENST00000396548 ZNF142P52746 1687 aaPredicted RBP17.84■□□□□ 0.45
TRIM39-204ENST00000396548 SLIT1O75093 1534 aa17.83■□□□□ 0.45
TRIM39-204ENST00000396548 ARHGEF28Q8N1W1 1705 aaKnown RBP17.83■□□□□ 0.44
TRIM39-204ENST00000396548 PTPRMP28827 1452 aa17.82■□□□□ 0.44
TRIM39-204ENST00000396548 ARHGAP23Q9P227 1491 aa17.82■□□□□ 0.44
TRIM39-204ENST00000396548 NUTM2DQ5VT03 806 aaPredicted RBP17.82■□□□□ 0.44
TRIM39-204ENST00000396548 TMEM2Q9UHN6 1383 aa17.81■□□□□ 0.44
TRIM39-204ENST00000396548 MIER1Q8N108 512 aa17.81■□□□□ 0.44
TRIM39-204ENST00000396548 CEP170BQ9Y4F5 1589 aaPredicted RBP17.8■□□□□ 0.44
TRIM39-204ENST00000396548 STAG3Q9UJ98 1225 aa17.79■□□□□ 0.44
TRIM39-204ENST00000396548 QRICH2Q9H0J4 1663 aa17.78■□□□□ 0.44
TRIM39-204ENST00000396548 DISP3Q9P2K9 1392 aa17.78■□□□□ 0.44
TRIM39-204ENST00000396548 EIF3AQ14152 1382 aaKnown RBP17.77■□□□□ 0.44
TRIM39-204ENST00000396548 SBNO2Q9Y2G9 1366 aa17.76■□□□□ 0.43
TRIM39-204ENST00000396548 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.76■□□□□ 0.43
TRIM39-204ENST00000396548 TMEM132EQ6IEE7 984 aa17.75■□□□□ 0.43
TRIM39-204ENST00000396548 MYOM1P52179 1685 aa17.74■□□□□ 0.43
TRIM39-204ENST00000396548 MED14O60244 1454 aa17.74■□□□□ 0.43
TRIM39-204ENST00000396548 KNDC1Q76NI1 1749 aa17.73■□□□□ 0.43
TRIM39-204ENST00000396548 SETD1BQ9UPS6 1966 aaKnown RBP17.73■□□□□ 0.43
TRIM39-204ENST00000396548 PLEKHG1Q9ULL1 1385 aa17.72■□□□□ 0.43
TRIM39-204ENST00000396548 YTHDC2Q9H6S0 1430 aaKnown RBP17.72■□□□□ 0.43
TRIM39-204ENST00000396548 DLC1Q96QB1 1528 aa17.72■□□□□ 0.43
TRIM39-204ENST00000396548 ADAMTS13Q76LX8 1427 aa17.71■□□□□ 0.43
TRIM39-204ENST00000396548 LTKP29376 864 aa17.71■□□□□ 0.43
TRIM39-204ENST00000396548 HDGFP51858 240 aaKnown RBP17.69■□□□□ 0.42
TRIM39-204ENST00000396548 TMF1P82094 1093 aa17.69■□□□□ 0.42
TRIM39-204ENST00000396548 TRAK1Q9UPV9 953 aa17.68■□□□□ 0.42
TRIM39-204ENST00000396548 CENPJQ9HC77 1338 aaPredicted RBP17.67■□□□□ 0.42
TRIM39-204ENST00000396548 METP08581 1390 aa17.67■□□□□ 0.42
TRIM39-204ENST00000396548 THEMISQ8N1K5 641 aaPredicted RBP17.67■□□□□ 0.42
TRIM39-204ENST00000396548 LRPPRCP42704 1394 aaKnown RBP17.67■□□□□ 0.42
TRIM39-204ENST00000396548 DIP2AQ14689 1571 aa17.67■□□□□ 0.42
TRIM39-204ENST00000396548 TULP4Q9NRJ4 1543 aa17.66■□□□□ 0.42
TRIM39-204ENST00000396548 TECPR2O15040 1411 aa17.66■□□□□ 0.42
TRIM39-204ENST00000396548 CPS1P31327 1500 aa17.66■□□□□ 0.42
TRIM39-204ENST00000396548 PLPPR3Q6T4P5 718 aa17.66■□□□□ 0.42
TRIM39-204ENST00000396548 ABCC11Q96J66 1382 aa17.65■□□□□ 0.42
TRIM39-204ENST00000396548 SLC24A1O60721 1099 aa17.65■□□□□ 0.42
TRIM39-204ENST00000396548 TXNDC2Q86VQ3 553 aa17.63■□□□□ 0.41
TRIM39-204ENST00000396548 SENP3Q9H4L4 574 aaPredicted RBP17.62■□□□□ 0.41
TRIM39-204ENST00000396548 EID1Q9Y6B2 187 aa17.6■□□□□ 0.41
TRIM39-204ENST00000396548 PTPRUQ92729 1446 aa17.6■□□□□ 0.41
TRIM39-204ENST00000396548 PER1O15534 1290 aaPredicted RBP17.6■□□□□ 0.41
TRIM39-204ENST00000396548 CDCA8Q53HL2 280 aa17.6■□□□□ 0.41
TRIM39-204ENST00000396548 SIRT1Q96EB6 747 aa17.6■□□□□ 0.41
TRIM39-204ENST00000396548 XRN1Q8IZH2 1706 aaKnown RBP17.6■□□□□ 0.41
TRIM39-204ENST00000396548 FAM135BQ49AJ0 1406 aa17.6■□□□□ 0.41
TRIM39-204ENST00000396548 ANP32CO43423 234 aa17.59■□□□□ 0.41
TRIM39-204ENST00000396548 PUS7Q96PZ0 661 aaKnown RBP17.59■□□□□ 0.41
TRIM39-204ENST00000396548 STK26Q9P289 416 aa17.59■□□□□ 0.41
TRIM39-204ENST00000396548 KDM4FA0A1W2PPD8 638 aa17.58■□□□□ 0.4
TRIM39-204ENST00000396548 POLR3GLQ9BT43 218 aa17.57■□□□□ 0.4
TRIM39-204ENST00000396548 PRAM1Q96QH2 718 aa17.57■□□□□ 0.4
TRIM39-204ENST00000396548 TBX22Q9Y458 520 aa17.57■□□□□ 0.4
TRIM39-204ENST00000396548 PLEKHH1Q9ULM0 1364 aa17.56■□□□□ 0.4
TRIM39-204ENST00000396548 CCER2I3L3R5 266 aa17.56■□□□□ 0.4
TRIM39-204ENST00000396548 PRKRIP1Q9H875 184 aaPredicted RBP17.56■□□□□ 0.4
TRIM39-204ENST00000396548 CHD2O14647 1828 aaKnown RBP17.55■□□□□ 0.4
TRIM39-204ENST00000396548 ADGRB2O60241 1585 aa17.55■□□□□ 0.4
TRIM39-204ENST00000396548 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.55■□□□□ 0.4
TRIM39-204ENST00000396548 PANK3Q9H999 370 aa17.53■□□□□ 0.4
TRIM39-204ENST00000396548 ROBO2Q9HCK4 1378 aa17.53■□□□□ 0.4
TRIM39-204ENST00000396548 EVC2Q86UK5 1308 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms