RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 NEXMIFQ5QGS0 1516 aa7.61□□□□□ -1.19
VPS41-203ENST00000395969 RRP7BPQ9NSQ0 103 aa7.6□□□□□ -1.19
VPS41-203ENST00000395969 ADGRB1O14514 1584 aa7.6□□□□□ -1.19
VPS41-203ENST00000395969 SPAG9O60271 1321 aaKnown RBP7.6□□□□□ -1.19
VPS41-203ENST00000395969 ROCK2O75116 1388 aaKnown RBP7.6□□□□□ -1.19
VPS41-203ENST00000395969 HNRNPMP52272 730 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS41-203ENST00000395969 CCDC144AA2RUR9 1427 aa7.59□□□□□ -1.19
VPS41-203ENST00000395969 COL17A1Q9UMD9 1497 aaPredicted RBP7.58□□□□□ -1.2
VPS41-203ENST00000395969 KANK1Q14678 1352 aa7.58□□□□□ -1.2
VPS41-203ENST00000395969 RIMS1Q86UR5 1692 aaKnown RBP7.58□□□□□ -1.2
VPS41-203ENST00000395969 DLC1Q96QB1 1528 aa7.58□□□□□ -1.2
VPS41-203ENST00000395969 CCER2I3L3R5 266 aa7.57□□□□□ -1.2
VPS41-203ENST00000395969 NPATQ14207 1427 aa7.57□□□□□ -1.2
VPS41-203ENST00000395969 ERICH6Q7L0X2 663 aa7.57□□□□□ -1.2
VPS41-203ENST00000395969 ARHGEF28Q8N1W1 1705 aaKnown RBP7.57□□□□□ -1.2
VPS41-203ENST00000395969 RPGRIP1LQ68CZ1 1315 aa7.57□□□□□ -1.2
VPS41-203ENST00000395969 ZNF142P52746 1687 aaPredicted RBP7.57□□□□□ -1.2
VPS41-203ENST00000395969 PIK3C2GO75747 1445 aa7.56□□□□□ -1.2
VPS41-203ENST00000395969 FKBP8Q14318 412 aa7.55□□□□□ -1.2
VPS41-203ENST00000395969 SIN3AQ96ST3 1273 aa7.55□□□□□ -1.2
VPS41-203ENST00000395969 L3MBTL2Q969R5 705 aa7.55□□□□□ -1.2
VPS41-203ENST00000395969 PUS7Q96PZ0 661 aaKnown RBP7.55□□□□□ -1.2
VPS41-203ENST00000395969 NPC1L1Q9UHC9 1359 aa7.55□□□□□ -1.2
VPS41-203ENST00000395969 PKD2Q13563 968 aa7.55□□□□□ -1.2
VPS41-203ENST00000395969 NPM1P06748 294 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS41-203ENST00000395969 CCDC7Q96M83 1385 aa7.54□□□□□ -1.2
VPS41-203ENST00000395969 ERVK-7P63135 1459 aa7.54□□□□□ -1.2
VPS41-203ENST00000395969 WASHC2AQ641Q2 1341 aa7.54□□□□□ -1.2
VPS41-203ENST00000395969 WASHC2CQ9Y4E1 1318 aa7.54□□□□□ -1.2
VPS41-203ENST00000395969 ANKRD26Q9UPS8 1709 aa7.54□□□□□ -1.2
VPS41-203ENST00000395969 SCAF11Q99590 1463 aaKnown RBP7.54□□□□□ -1.2
VPS41-203ENST00000395969 NRXN3Q9Y4C0 1643 aa7.53□□□□□ -1.2
VPS41-203ENST00000395969 DIP2AQ14689 1571 aa7.53□□□□□ -1.2
VPS41-203ENST00000395969 USP54Q70EL1 1684 aa7.53□□□□□ -1.2
VPS41-203ENST00000395969 UBR1Q8IWV7 1749 aa7.53□□□□□ -1.2
VPS41-203ENST00000395969 ADGRB2O60241 1585 aa7.53□□□□□ -1.2
VPS41-203ENST00000395969 MYO5BQ9ULV0 1848 aa7.53□□□□□ -1.2
VPS41-203ENST00000395969 ANO8Q9HCE9 1232 aaPredicted RBP7.53□□□□□ -1.2
VPS41-203ENST00000395969 CHIC2Q9UKJ5 165 aa7.53□□□□□ -1.2
VPS41-203ENST00000395969 NBPF8Q3BBV2 869 aa7.52□□□□□ -1.21
VPS41-203ENST00000395969 QRICH2Q9H0J4 1663 aa7.52□□□□□ -1.21
VPS41-203ENST00000395969 ITGAEP38570 1179 aa7.51□□□□□ -1.21
VPS41-203ENST00000395969 ADAMTSL3P82987 1691 aa7.5□□□□□ -1.21
VPS41-203ENST00000395969 SLIT1O75093 1534 aa7.5□□□□□ -1.21
VPS41-203ENST00000395969 CCDC136Q96JN2 1154 aa7.5□□□□□ -1.21
VPS41-203ENST00000395969 CPS1P31327 1500 aa7.5□□□□□ -1.21
VPS41-203ENST00000395969 ASXL1Q8IXJ9 1541 aa7.5□□□□□ -1.21
VPS41-203ENST00000395969 USP47Q96K76 1375 aa7.5□□□□□ -1.21
VPS41-203ENST00000395969 EIF4G2P78344 907 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS41-203ENST00000395969 YEATS2Q9ULM3 1422 aa7.49□□□□□ -1.21
VPS41-203ENST00000395969 LRRC7Q96NW7 1537 aa7.49□□□□□ -1.21
VPS41-203ENST00000395969 TECPR2O15040 1411 aa7.49□□□□□ -1.21
VPS41-203ENST00000395969 AFAP1Q8N556 730 aa7.49□□□□□ -1.21
VPS41-203ENST00000395969 ARHGAP23Q9P227 1491 aa7.48□□□□□ -1.21
VPS41-203ENST00000395969 C3P01024 1663 aa7.48□□□□□ -1.21
VPS41-203ENST00000395969 NLRP1Q9C000 1473 aa7.48□□□□□ -1.21
VPS41-203ENST00000395969 TRIM52Q96A61 297 aa7.48□□□□□ -1.21
VPS41-203ENST00000395969 TOPAZ1Q8N9V7 1692 aa7.48□□□□□ -1.21
VPS41-203ENST00000395969 TSPOAP1O95153 1857 aa7.47□□□□□ -1.21
VPS41-203ENST00000395969 MED14O60244 1454 aa7.47□□□□□ -1.21
VPS41-203ENST00000395969 ZNF777Q9ULD5 760 aaPredicted RBP7.47□□□□□ -1.21
VPS41-203ENST00000395969 KDM2AQ9Y2K7 1162 aa7.47□□□□□ -1.21
VPS41-203ENST00000395969 FER1L4A9Z1Z3 1794 aa7.47□□□□□ -1.21
VPS41-203ENST00000395969 RBM19Q9Y4C8 960 aaKnown RBP7.47□□□□□ -1.21
VPS41-203ENST00000395969 HSPA5P11021 654 aaKnown RBP7.46□□□□□ -1.22
VPS41-203ENST00000395969 NINLQ9Y2I6 1382 aa7.45□□□□□ -1.22
VPS41-203ENST00000395969 ARID3CA6NKF2 412 aa7.45□□□□□ -1.22
VPS41-203ENST00000395969 SLC52A1Q9NWF4 448 aa7.45□□□□□ -1.22
VPS41-203ENST00000395969 EIF3AQ14152 1382 aaKnown RBP7.45□□□□□ -1.22
VPS41-203ENST00000395969 A2ML1A8K2U0 1454 aa7.45□□□□□ -1.22
VPS41-203ENST00000395969 ALKQ9UM73 1620 aa7.45□□□□□ -1.22
VPS41-203ENST00000395969 TESK2Q96S53 571 aa7.45□□□□□ -1.22
VPS41-203ENST00000395969 PARD3Q8TEW0 1356 aa7.44□□□□□ -1.22
VPS41-203ENST00000395969 SIRT1Q96EB6 747 aa7.44□□□□□ -1.22
VPS41-203ENST00000395969 KCNH8Q96L42 1107 aa7.44□□□□□ -1.22
VPS41-203ENST00000395969 XRN1Q8IZH2 1706 aaKnown RBP7.44□□□□□ -1.22
VPS41-203ENST00000395969 AKAP12Q02952 1782 aa7.44□□□□□ -1.22
VPS41-203ENST00000395969 PTPRMP28827 1452 aa7.44□□□□□ -1.22
VPS41-203ENST00000395969 KIF7Q2M1P5 1343 aa7.44□□□□□ -1.22
VPS41-203ENST00000395969 LRPPRCP42704 1394 aaKnown RBP7.43□□□□□ -1.22
VPS41-203ENST00000395969 MON2Q7Z3U7 1717 aa7.43□□□□□ -1.22
VPS41-203ENST00000395969 CDC42BPGQ6DT37 1551 aa7.42□□□□□ -1.22
VPS41-203ENST00000395969 NRKQ7Z2Y5 1582 aa7.42□□□□□ -1.22
VPS41-203ENST00000395969 FAM135BQ49AJ0 1406 aa7.42□□□□□ -1.22
VPS41-203ENST00000395969 C14orf93Q9H972 538 aaKnown RBP7.41□□□□□ -1.22
VPS41-203ENST00000395969 KIF20BQ96Q89 1820 aa7.41□□□□□ -1.22
VPS41-203ENST00000395969 TULP4Q9NRJ4 1543 aa7.41□□□□□ -1.22
VPS41-203ENST00000395969 EIF5BO60841 1220 aaKnown RBP7.41□□□□□ -1.22
VPS41-203ENST00000395969 NPM2Q86SE8 214 aaKnown RBP7.41□□□□□ -1.22
VPS41-203ENST00000395969 C14orf37Q86TY3 774 aa7.41□□□□□ -1.22
VPS41-203ENST00000395969 FANCIQ9NVI1 1328 aa7.4□□□□□ -1.22
VPS41-203ENST00000395969 NWD1Q149M9 1564 aa7.4□□□□□ -1.22
VPS41-203ENST00000395969 TMEM132AQ24JP5 1023 aa7.4□□□□□ -1.22
VPS41-203ENST00000395969 NALCNQ8IZF0 1738 aa7.4□□□□□ -1.22
VPS41-203ENST00000395969 BRD4O60885 1362 aaPredicted RBP7.4□□□□□ -1.22
VPS41-203ENST00000395969 SHPRHQ149N8 1683 aa7.39□□□□□ -1.23
VPS41-203ENST00000395969 CNKSR2Q8WXI2 1034 aa7.39□□□□□ -1.23
VPS41-203ENST00000395969 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.39□□□□□ -1.23
VPS41-203ENST00000395969 BLMP54132 1417 aaPredicted RBP7.39□□□□□ -1.23
VPS41-203ENST00000395969 ITSN1Q15811 1721 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms