RNA–Protein interactions for RNA: ENST00000394181.6

CLDND1-203, Transcript of claudin domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene CLDND1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-203ENST00000394181 IFT172Q9UG01 1749 aa26.39■■□□□ 1.82
CLDND1-203ENST00000394181 PIK3C2BO00750 1634 aa26.39■■□□□ 1.81
CLDND1-203ENST00000394181 NUTM2DQ5VT03 806 aaPredicted RBP26.39■■□□□ 1.81
CLDND1-203ENST00000394181 DISP3Q9P2K9 1392 aa26.36■■□□□ 1.81
CLDND1-203ENST00000394181 NRXN1Q9ULB1 1477 aa26.35■■□□□ 1.81
CLDND1-203ENST00000394181 PRKRIP1Q9H875 184 aaPredicted RBP26.35■■□□□ 1.81
CLDND1-203ENST00000394181 PPP6R1Q9UPN7 881 aa26.35■■□□□ 1.81
CLDND1-203ENST00000394181 PREX1Q8TCU6 1659 aa26.34■■□□□ 1.81
CLDND1-203ENST00000394181 SLC52A1Q9NWF4 448 aa26.34■■□□□ 1.81
CLDND1-203ENST00000394181 CNGB1Q14028 1251 aaPredicted RBP26.33■■□□□ 1.81
CLDND1-203ENST00000394181 CLTCQ00610 1675 aaKnown RBP26.33■■□□□ 1.81
CLDND1-203ENST00000394181 SCAF11Q99590 1463 aaKnown RBP26.32■■□□□ 1.8
CLDND1-203ENST00000394181 IQGAP1P46940 1657 aa26.31■■□□□ 1.8
CLDND1-203ENST00000394181 PPLO60437 1756 aa26.31■■□□□ 1.8
CLDND1-203ENST00000394181 CCDC184Q52MB2 194 aa26.31■■□□□ 1.8
CLDND1-203ENST00000394181 RPGRIP1LQ68CZ1 1315 aa26.31■■□□□ 1.8
CLDND1-203ENST00000394181 ERVK-7P63135 1459 aa26.3■■□□□ 1.8
CLDND1-203ENST00000394181 KIAA1210Q9ULL0 1709 aa26.29■■□□□ 1.8
CLDND1-203ENST00000394181 SENP3Q9H4L4 574 aaPredicted RBP26.29■■□□□ 1.8
CLDND1-203ENST00000394181 PIK3C2GO75747 1445 aa26.28■■□□□ 1.8
CLDND1-203ENST00000394181 SCAF1Q9H7N4 1312 aaKnown RBP26.27■■□□□ 1.8
CLDND1-203ENST00000394181 C14orf93Q9H972 538 aaKnown RBP26.26■■□□□ 1.79
CLDND1-203ENST00000394181 TMF1P82094 1093 aa26.26■■□□□ 1.79
CLDND1-203ENST00000394181 NEXMIFQ5QGS0 1516 aa26.26■■□□□ 1.79
CLDND1-203ENST00000394181 TMEM132EQ6IEE7 984 aa26.25■■□□□ 1.79
CLDND1-203ENST00000394181 TMEM131LA2VDJ0 1609 aa26.23■■□□□ 1.79
CLDND1-203ENST00000394181 VGFO15240 615 aaPredicted RBP26.23■■□□□ 1.79
CLDND1-203ENST00000394181 ZMYM3Q14202 1370 aa26.22■■□□□ 1.79
CLDND1-203ENST00000394181 MYO5BQ9ULV0 1848 aa26.22■■□□□ 1.79
CLDND1-203ENST00000394181 ESF1Q9H501 851 aaKnown RBP26.22■■□□□ 1.79
CLDND1-203ENST00000394181 DNAJC5Q9H3Z4 198 aa26.21■■□□□ 1.79
CLDND1-203ENST00000394181 TRAK1Q9UPV9 953 aa26.18■■□□□ 1.78
CLDND1-203ENST00000394181 SPATA31D1Q6ZQQ2 1576 aa26.18■■□□□ 1.78
CLDND1-203ENST00000394181 EIF3AQ14152 1382 aaKnown RBP26.17■■□□□ 1.78
CLDND1-203ENST00000394181 STAG3Q9UJ98 1225 aa26.17■■□□□ 1.78
CLDND1-203ENST00000394181 ADGRB1O14514 1584 aa26.16■■□□□ 1.78
CLDND1-203ENST00000394181 PANK3Q9H999 370 aa26.15■■□□□ 1.78
CLDND1-203ENST00000394181 PER1O15534 1290 aaPredicted RBP26.14■■□□□ 1.78
CLDND1-203ENST00000394181 SETBP1Q9Y6X0 1596 aa26.14■■□□□ 1.78
CLDND1-203ENST00000394181 MRS2Q9HD23 443 aa26.13■■□□□ 1.77
CLDND1-203ENST00000394181 GTF3C3Q9Y5Q9 886 aa26.12■■□□□ 1.77
CLDND1-203ENST00000394181 ZFYVE9O95405 1425 aa26.12■■□□□ 1.77
CLDND1-203ENST00000394181 A2ML1A8K2U0 1454 aa26.1■■□□□ 1.77
CLDND1-203ENST00000394181 CEBPAP49715 358 aaPredicted RBP26.08■■□□□ 1.77
CLDND1-203ENST00000394181 CENPJQ9HC77 1338 aaPredicted RBP26.08■■□□□ 1.77
CLDND1-203ENST00000394181 FAM9BQ8IZU0 186 aa26.06■■□□□ 1.76
CLDND1-203ENST00000394181 CDCA8Q53HL2 280 aa26.05■■□□□ 1.76
CLDND1-203ENST00000394181 STK26Q9P289 416 aa26.04■■□□□ 1.76
CLDND1-203ENST00000394181 TNRQ92752 1358 aa26.03■■□□□ 1.76
CLDND1-203ENST00000394181 ASXL1Q8IXJ9 1541 aa26.02■■□□□ 1.76
CLDND1-203ENST00000394181 MYO3AQ8NEV4 1616 aa26.02■■□□□ 1.76
CLDND1-203ENST00000394181 CC2D1BQ5T0F9 858 aaKnown RBP26.02■■□□□ 1.76
CLDND1-203ENST00000394181 PLPPR3Q6T4P5 718 aa26.02■■□□□ 1.76
CLDND1-203ENST00000394181 RIMS2Q9UQ26 1411 aa26.02■■□□□ 1.76
CLDND1-203ENST00000394181 HNRNPUQ00839 825 aaKnown RBP eCLIP25.99■■□□□ 1.75
CLDND1-203ENST00000394181 SBNO2Q9Y2G9 1366 aa25.99■■□□□ 1.75
CLDND1-203ENST00000394181 RALBP1Q15311 655 aa25.99■■□□□ 1.75
CLDND1-203ENST00000394181 SAFB2Q14151 953 aaKnown RBP eCLIP25.98■■□□□ 1.75
CLDND1-203ENST00000394181 KTN1Q86UP2 1357 aaKnown RBP25.97■■□□□ 1.75
CLDND1-203ENST00000394181 PARD3Q8TEW0 1356 aa25.96■■□□□ 1.75
CLDND1-203ENST00000394181 MYOM1P52179 1685 aa25.96■■□□□ 1.75
CLDND1-203ENST00000394181 SLC24A1O60721 1099 aa25.96■■□□□ 1.75
CLDND1-203ENST00000394181 QRICH2Q9H0J4 1663 aa25.96■■□□□ 1.75
CLDND1-203ENST00000394181 ALKQ9UM73 1620 aa25.95■■□□□ 1.75
CLDND1-203ENST00000394181 MYBBP1AQ9BQG0 1328 aaKnown RBP25.95■■□□□ 1.75
CLDND1-203ENST00000394181 KDM5AP29375 1690 aaKnown RBP25.95■■□□□ 1.75
CLDND1-203ENST00000394181 ARHGEF28Q8N1W1 1705 aaKnown RBP25.93■■□□□ 1.74
CLDND1-203ENST00000394181 TMC1Q8TDI8 760 aa25.92■■□□□ 1.74
CLDND1-203ENST00000394181 KNSTRNQ9Y448 316 aa25.92■■□□□ 1.74
CLDND1-203ENST00000394181 YTHDC2Q9H6S0 1430 aaKnown RBP25.92■■□□□ 1.74
CLDND1-203ENST00000394181 PTPRMP28827 1452 aa25.91■■□□□ 1.74
CLDND1-203ENST00000394181 AMER1Q5JTC6 1135 aaPredicted RBP25.9■■□□□ 1.74
CLDND1-203ENST00000394181 PNISRQ8TF01 805 aaKnown RBP25.89■■□□□ 1.74
CLDND1-203ENST00000394181 PRAM1Q96QH2 718 aa25.89■■□□□ 1.74
CLDND1-203ENST00000394181 CARD14Q9BXL6 1004 aa25.89■■□□□ 1.74
CLDND1-203ENST00000394181 SLC12A5Q9H2X9 1139 aa25.88■■□□□ 1.73
CLDND1-203ENST00000394181 C3P01024 1663 aa25.87■■□□□ 1.73
CLDND1-203ENST00000394181 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.86■■□□□ 1.73
CLDND1-203ENST00000394181 BRD4O60885 1362 aaPredicted RBP25.86■■□□□ 1.73
CLDND1-203ENST00000394181 TMEM2Q9UHN6 1383 aa25.86■■□□□ 1.73
CLDND1-203ENST00000394181 FER1L4A9Z1Z3 1794 aa25.85■■□□□ 1.73
CLDND1-203ENST00000394181 UBR1Q8IWV7 1749 aa25.85■■□□□ 1.73
CLDND1-203ENST00000394181 TULP4Q9NRJ4 1543 aa25.85■■□□□ 1.73
CLDND1-203ENST00000394181 NLRP13Q86W25 1043 aa25.85■■□□□ 1.73
CLDND1-203ENST00000394181 CABP2Q9NPB3 220 aa25.85■■□□□ 1.73
CLDND1-203ENST00000394181 EVC2Q86UK5 1308 aa25.84■■□□□ 1.73
CLDND1-203ENST00000394181 POGKQ9P215 609 aa25.83■■□□□ 1.73
CLDND1-203ENST00000394181 NRXN3Q9Y4C0 1643 aa25.83■■□□□ 1.73
CLDND1-203ENST00000394181 MINK1Q8N4C8 1332 aaPredicted RBP25.83■■□□□ 1.73
CLDND1-203ENST00000394181 METP08581 1390 aa25.83■■□□□ 1.72
CLDND1-203ENST00000394181 SENP3-EIF4A1A0A087X0R7 540 aa25.82■■□□□ 1.72
CLDND1-203ENST00000394181 LTKP29376 864 aa25.82■■□□□ 1.72
CLDND1-203ENST00000394181 WAPLQ7Z5K2 1190 aa25.81■■□□□ 1.72
CLDND1-203ENST00000394181 SETD1AO15047 1707 aaKnown RBP25.81■■□□□ 1.72
CLDND1-203ENST00000394181 BCANQ96GW7 911 aa25.8■■□□□ 1.72
CLDND1-203ENST00000394181 NLRP1Q9C000 1473 aa25.8■■□□□ 1.72
CLDND1-203ENST00000394181 HDGFP51858 240 aaKnown RBP25.79■■□□□ 1.72
CLDND1-203ENST00000394181 LRPPRCP42704 1394 aaKnown RBP25.78■■□□□ 1.72
CLDND1-203ENST00000394181 PLEKHH1Q9ULM0 1364 aa25.78■■□□□ 1.72
CLDND1-203ENST00000394181 PPP2R1AP30153 589 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms