RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 ACBD3Q9H3P7 528 aa19.7■□□□□ 0.74
SHANK1-204ENST00000391814 RDXP35241 583 aaKnown RBP19.69■□□□□ 0.74
SHANK1-204ENST00000391814 TOMM22Q9NS69 142 aa19.68■□□□□ 0.74
SHANK1-204ENST00000391814 FOSBP53539 338 aa19.68■□□□□ 0.74
SHANK1-204ENST00000391814 HSP90B2PQ58FF3 399 aa19.67■□□□□ 0.74
SHANK1-204ENST00000391814 H0YHG0 523 aa19.67■□□□□ 0.74
SHANK1-204ENST00000391814 TSPY26PQ9H489 355 aa19.67■□□□□ 0.74
SHANK1-204ENST00000391814 NUP155O75694 1391 aa19.66■□□□□ 0.74
SHANK1-204ENST00000391814 REC8O95072 547 aa19.66■□□□□ 0.74
SHANK1-204ENST00000391814 RRP12Q5JTH9 1297 aaKnown RBP19.66■□□□□ 0.74
SHANK1-204ENST00000391814 VPS37CA5D8V6 355 aaPredicted RBP19.66■□□□□ 0.74
SHANK1-204ENST00000391814 ELL2O00472 640 aaPredicted RBP19.66■□□□□ 0.74
SHANK1-204ENST00000391814 PRDM10Q9NQV6 1147 aa19.65■□□□□ 0.74
SHANK1-204ENST00000391814 LEKR1Q6ZMV7 388 aa19.63■□□□□ 0.73
SHANK1-204ENST00000391814 CARMIL1Q5VZK9 1371 aa19.63■□□□□ 0.73
SHANK1-204ENST00000391814 GRPEL1Q9HAV7 217 aa19.63■□□□□ 0.73
SHANK1-204ENST00000391814 SMC3Q9UQE7 1217 aa19.63■□□□□ 0.73
SHANK1-204ENST00000391814 SPC24Q8NBT2 197 aa19.62■□□□□ 0.73
SHANK1-204ENST00000391814 DDX19BQ9UMR2 479 aa19.61■□□□□ 0.73
SHANK1-204ENST00000391814 SKIDA1Q1XH10 827 aa19.61■□□□□ 0.73
SHANK1-204ENST00000391814 ERCC6Q03468 1493 aa19.61■□□□□ 0.73
SHANK1-204ENST00000391814 CCDC88BA6NC98 1476 aa19.61■□□□□ 0.73
SHANK1-204ENST00000391814 INTS3Q68E01 1043 aaKnown RBP19.61■□□□□ 0.73
SHANK1-204ENST00000391814 ST20-MTHFSA0A0A6YYL1 179 aa19.6■□□□□ 0.73
SHANK1-204ENST00000391814 MARCH6O60337 910 aa19.6■□□□□ 0.73
SHANK1-204ENST00000391814 PDILTQ8N807 584 aa19.6■□□□□ 0.73
SHANK1-204ENST00000391814 MSH5O43196 834 aa19.6■□□□□ 0.73
SHANK1-204ENST00000391814 ERICH4A6NGS2 130 aa19.6■□□□□ 0.73
SHANK1-204ENST00000391814 PRPF40AO75400 957 aaKnown RBP19.6■□□□□ 0.73
SHANK1-204ENST00000391814 LMOD3Q0VAK6 560 aa19.6■□□□□ 0.73
SHANK1-204ENST00000391814 HSP90AB3PQ58FF7 597 aa19.59■□□□□ 0.73
SHANK1-204ENST00000391814 IPO7O95373 1038 aaKnown RBP19.59■□□□□ 0.73
SHANK1-204ENST00000391814 APAF1O14727 1248 aa19.59■□□□□ 0.73
SHANK1-204ENST00000391814 DZIP1LQ8IYY4 767 aaKnown RBP19.59■□□□□ 0.73
SHANK1-204ENST00000391814 CUX2O14529 1486 aa19.58■□□□□ 0.73
SHANK1-204ENST00000391814 CCDC27Q2M243 656 aa19.58■□□□□ 0.72
SHANK1-204ENST00000391814 PLCD4Q9BRC7 762 aa19.58■□□□□ 0.72
SHANK1-204ENST00000391814 MPNDQ8N594 471 aa19.58■□□□□ 0.72
SHANK1-204ENST00000391814 LNPKQ9C0E8 428 aa19.58■□□□□ 0.72
SHANK1-204ENST00000391814 TTLL5Q6EMB2 1281 aa19.57■□□□□ 0.72
SHANK1-204ENST00000391814 PANK1Q8TE04 598 aa19.57■□□□□ 0.72
SHANK1-204ENST00000391814 NAP1L1P55209 391 aaKnown RBP19.57■□□□□ 0.72
SHANK1-204ENST00000391814 HMGN5P82970 282 aaKnown RBP19.57■□□□□ 0.72
SHANK1-204ENST00000391814 TRIM5Q9C035 493 aa19.56■□□□□ 0.72
SHANK1-204ENST00000391814 LETM1O95202 739 aaPredicted RBP19.56■□□□□ 0.72
SHANK1-204ENST00000391814 CAGE1Q8TC20 777 aa19.56■□□□□ 0.72
SHANK1-204ENST00000391814 USP47Q96K76 1375 aa19.56■□□□□ 0.72
SHANK1-204ENST00000391814 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.55■□□□□ 0.72
SHANK1-204ENST00000391814 CSB-PGBD3P0DP91 1061 aa19.55■□□□□ 0.72
SHANK1-204ENST00000391814 ANKRD20A12PQ8NF67 263 aa19.55■□□□□ 0.72
SHANK1-204ENST00000391814 UBE2Q2Q8WVN8 375 aa19.55■□□□□ 0.72
SHANK1-204ENST00000391814 TRIM29Q14134 588 aa19.54■□□□□ 0.72
SHANK1-204ENST00000391814 HOOK1Q9UJC3 728 aaKnown RBP19.54■□□□□ 0.72
SHANK1-204ENST00000391814 CDR1P51861 262 aa19.54■□□□□ 0.72
SHANK1-204ENST00000391814 RUFY2Q8WXA3 655 aa19.54■□□□□ 0.72
SHANK1-204ENST00000391814 HDAC5Q9UQL6 1122 aa19.54■□□□□ 0.72
SHANK1-204ENST00000391814 ERCC4Q92889 916 aaPredicted RBP19.54■□□□□ 0.72
SHANK1-204ENST00000391814 ZKSCAN1P17029 563 aaPredicted RBP19.53■□□□□ 0.72
SHANK1-204ENST00000391814 AKAP17AQ02040 695 aaKnown RBP19.53■□□□□ 0.72
SHANK1-204ENST00000391814 CCDC191Q8NCU4 936 aa19.53■□□□□ 0.72
SHANK1-204ENST00000391814 ANKRD30AQ9BXX3 1397 aa19.53■□□□□ 0.72
SHANK1-204ENST00000391814 CNTLNQ9NXG0 1405 aa19.53■□□□□ 0.72
SHANK1-204ENST00000391814 SMC2O95347 1197 aa19.52■□□□□ 0.72
SHANK1-204ENST00000391814 CCDC73Q6ZRK6 1079 aa19.52■□□□□ 0.72
SHANK1-204ENST00000391814 AKNAQ7Z591 1439 aa19.51■□□□□ 0.71
SHANK1-204ENST00000391814 DHX37Q8IY37 1157 aaKnown RBP19.51■□□□□ 0.71
SHANK1-204ENST00000391814 NAT10Q9H0A0 1025 aaKnown RBP19.51■□□□□ 0.71
SHANK1-204ENST00000391814 CBX1P83916 185 aa19.51■□□□□ 0.71
SHANK1-204ENST00000391814 CHMP4CQ96CF2 233 aa19.51■□□□□ 0.71
SHANK1-204ENST00000391814 TERF2IPQ9NYB0 399 aa19.51■□□□□ 0.71
SHANK1-204ENST00000391814 CDC45O75419 566 aa19.51■□□□□ 0.71
SHANK1-204ENST00000391814 TSPYL1Q9H0U9 437 aa19.51■□□□□ 0.71
SHANK1-204ENST00000391814 NUTM2DQ5VT03 806 aaPredicted RBP19.51■□□□□ 0.71
SHANK1-204ENST00000391814 G3V3G9 751 aa19.5■□□□□ 0.71
SHANK1-204ENST00000391814 DCAF8Q5TAQ9 597 aa19.5■□□□□ 0.71
SHANK1-204ENST00000391814 ESPNB1AK53 854 aa19.49■□□□□ 0.71
SHANK1-204ENST00000391814 OLFM4Q6UX06 510 aa19.49■□□□□ 0.71
SHANK1-204ENST00000391814 BACH2Q9BYV9 841 aa19.49■□□□□ 0.71
SHANK1-204ENST00000391814 TMX4Q9H1E5 349 aaPredicted RBP19.49■□□□□ 0.71
SHANK1-204ENST00000391814 DCTN1Q14203 1278 aa19.48■□□□□ 0.71
SHANK1-204ENST00000391814 TAF3Q5VWG9 929 aa19.48■□□□□ 0.71
SHANK1-204ENST00000391814 SYNE3Q6ZMZ3 975 aa19.48■□□□□ 0.71
SHANK1-204ENST00000391814 AXDND1Q5T1B0 1012 aaPredicted RBP19.47■□□□□ 0.71
SHANK1-204ENST00000391814 AEBP1Q8IUX7 1158 aa19.47■□□□□ 0.71
SHANK1-204ENST00000391814 CCDC18Q5T9S5 1454 aa19.46■□□□□ 0.71
SHANK1-204ENST00000391814 CHMP4AQ9BY43 222 aa19.46■□□□□ 0.71
SHANK1-204ENST00000391814 CPLX1O14810 134 aa19.46■□□□□ 0.7
SHANK1-204ENST00000391814 MBD3O95983 291 aa19.46■□□□□ 0.7
SHANK1-204ENST00000391814 CCDC112Q8NEF3 446 aa19.46■□□□□ 0.7
SHANK1-204ENST00000391814 RAD21O60216 631 aa19.45■□□□□ 0.7
SHANK1-204ENST00000391814 GGT6Q6P531 493 aa19.45■□□□□ 0.7
SHANK1-204ENST00000391814 CCDC7Q96M83 1385 aa19.45■□□□□ 0.7
SHANK1-204ENST00000391814 IFIT2P09913 472 aaKnown RBP19.45■□□□□ 0.7
SHANK1-204ENST00000391814 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.45■□□□□ 0.7
SHANK1-204ENST00000391814 NECTIN2Q92692 538 aa19.44■□□□□ 0.7
SHANK1-204ENST00000391814 PDZRN3Q9UPQ7 1066 aa19.44■□□□□ 0.7
SHANK1-204ENST00000391814 CCP110O43303 1012 aa19.44■□□□□ 0.7
SHANK1-204ENST00000391814 PDCL2Q8N4E4 241 aa19.44■□□□□ 0.7
SHANK1-204ENST00000391814 RNF20Q5VTR2 975 aa19.43■□□□□ 0.7
SHANK1-204ENST00000391814 CCDC47Q96A33 483 aaKnown RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms