RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 MAP7D2Q96T17 732 aa15.2■□□□□ 0.02
CHD3-203ENST00000380358 RUFY1Q96T51 708 aa15.2■□□□□ 0.02
CHD3-203ENST00000380358 KIF3BO15066 747 aa15.2■□□□□ 0.02
CHD3-203ENST00000380358 WWC2Q6AWC2 1192 aa15.2■□□□□ 0.02
CHD3-203ENST00000380358 DDX49Q9Y6V7 483 aaKnown RBP15.2■□□□□ 0.02
CHD3-203ENST00000380358 NEUROD6Q96NK8 337 aa15.2■□□□□ 0.02
CHD3-203ENST00000380358 ATP2B1P20020 1258 aa15.19■□□□□ 0.02
CHD3-203ENST00000380358 TRDNQ13061 729 aa15.18■□□□□ 0.02
CHD3-203ENST00000380358 VPS37CA5D8V6 355 aaPredicted RBP15.17■□□□□ 0.02
CHD3-203ENST00000380358 OFD1O75665 1012 aa15.17■□□□□ 0.02
CHD3-203ENST00000380358 NEFHP12036 1026 aa15.17■□□□□ 0.02
CHD3-203ENST00000380358 ANKRD20A12PQ8NF67 263 aa15.17■□□□□ 0.02
CHD3-203ENST00000380358 GPS2Q13227 327 aa15.17■□□□□ 0.02
CHD3-203ENST00000380358 WASHC4Q2M389 1173 aa15.17■□□□□ 0.02
CHD3-203ENST00000380358 TERF2IPQ9NYB0 399 aa15.17■□□□□ 0.02
CHD3-203ENST00000380358 IFIT2P09913 472 aaKnown RBP15.17■□□□□ 0.02
CHD3-203ENST00000380358 NEXNQ0ZGT2 675 aa15.17■□□□□ 0.02
CHD3-203ENST00000380358 PSME1Q06323 249 aa15.16■□□□□ 0.02
CHD3-203ENST00000380358 BRPF1P55201 1214 aaPredicted RBP15.16■□□□□ 0.02
CHD3-203ENST00000380358 HDAC5Q9UQL6 1122 aa15.16■□□□□ 0.02
CHD3-203ENST00000380358 CENPJQ9HC77 1338 aaPredicted RBP15.16■□□□□ 0.02
CHD3-203ENST00000380358 WASHC2CQ9Y4E1 1318 aa15.15■□□□□ 0.02
CHD3-203ENST00000380358 CPLX2Q6PUV4 134 aaKnown RBP15.15■□□□□ 0.02
CHD3-203ENST00000380358 NUTM2BA6NNL0 878 aaPredicted RBP15.15■□□□□ 0.02
CHD3-203ENST00000380358 NUTM2EB1AL46 878 aaPredicted RBP15.15■□□□□ 0.02
CHD3-203ENST00000380358 NUTM2AQ8IVF1 878 aaPredicted RBP15.15■□□□□ 0.02
CHD3-203ENST00000380358 TIMELESSQ9UNS1 1208 aa15.15■□□□□ 0.02
CHD3-203ENST00000380358 CAGE1Q8TC20 777 aa15.14■□□□□ 0.01
CHD3-203ENST00000380358 HSP90AA2PQ14568 343 aaPredicted RBP15.14■□□□□ 0.01
CHD3-203ENST00000380358 PLCD3Q8N3E9 789 aa15.14■□□□□ 0.01
CHD3-203ENST00000380358 PAXIP1Q6ZW49 1069 aaPredicted RBP15.13■□□□□ 0.01
CHD3-203ENST00000380358 ZHX3Q9H4I2 956 aa15.13■□□□□ 0.01
CHD3-203ENST00000380358 RBM5P52756 815 aaKnown RBP eCLIP15.12■□□□□ 0.01
CHD3-203ENST00000380358 HNRNPMP52272 730 aaKnown RBP eCLIP15.12■□□□□ 0.01
CHD3-203ENST00000380358 FAM13BQ9NYF5 915 aa15.12■□□□□ 0.01
CHD3-203ENST00000380358 BAZ1BQ9UIG0 1483 aaKnown RBP15.11■□□□□ 0.01
CHD3-203ENST00000380358 MINK1Q8N4C8 1332 aaPredicted RBP15.11■□□□□ 0.01
CHD3-203ENST00000380358 TTC16Q8NEE8 873 aa15.11■□□□□ 0.01
CHD3-203ENST00000380358 CCDC180Q9P1Z9 1646 aa15.1■□□□□ 0.01
CHD3-203ENST00000380358 MATR3P43243 847 aaKnown RBP eCLIP15.09■□□□□ 0.013e-8■■■□□ 14.8
CHD3-203ENST00000380358 COG3Q96JB2 828 aa15.09■□□□□ 0.01
CHD3-203ENST00000380358 SPDYE4A6NLX3 237 aa15.09■□□□□ 0.01
CHD3-203ENST00000380358 SF3B2Q13435 895 aaKnown RBP15.09■□□□□ 0.01
CHD3-203ENST00000380358 PSMD1Q99460 953 aa15.09■□□□□ 0.01
CHD3-203ENST00000380358 CHMP4AQ9BY43 222 aa15.08■□□□□ 0
CHD3-203ENST00000380358 RIC3Q7Z5B4 369 aa15.08■□□□□ 0
CHD3-203ENST00000380358 IFT57Q9NWB7 429 aa15.08■□□□□ 0
CHD3-203ENST00000380358 G3BP1Q13283 466 aaKnown RBP eCLIP15.08■□□□□ 0
CHD3-203ENST00000380358 FAM161AQ3B820 660 aa15.08■□□□□ 0
CHD3-203ENST00000380358 STRN4Q9NRL3 753 aa15.08■□□□□ 0
CHD3-203ENST00000380358 LMOD3Q0VAK6 560 aa15.07■□□□□ 0
CHD3-203ENST00000380358 RBM42Q9BTD8 480 aaKnown RBP15.07■□□□□ 0
CHD3-203ENST00000380358 KRT18P05783 430 aaKnown RBP15.07■□□□□ 0
CHD3-203ENST00000380358 CEBPZQ03701 1054 aaKnown RBP15.07■□□□□ 0
CHD3-203ENST00000380358 HOOK1Q9UJC3 728 aaKnown RBP15.07■□□□□ 0
CHD3-203ENST00000380358 SASS6Q6UVJ0 657 aa15.06■□□□□ 0
CHD3-203ENST00000380358 PIP4K2BP78356 416 aa15.06■□□□□ 0
CHD3-203ENST00000380358 FKBP5Q13451 457 aaPredicted RBP15.06■□□□□ 0
CHD3-203ENST00000380358 FMNL2Q96PY5 1086 aa15.06■□□□□ 0
CHD3-203ENST00000380358 PDCL3Q9H2J4 239 aa15.06■□□□□ 0
CHD3-203ENST00000380358 PIBF1Q8WXW3 757 aa15.06■□□□□ 0
CHD3-203ENST00000380358 ZKSCAN1P17029 563 aaPredicted RBP15.05■□□□□ 0
CHD3-203ENST00000380358 SAFBQ15424 915 aaKnown RBP eCLIP15.05■□□□□ -0
CHD3-203ENST00000380358 CDK5RAP3Q96JB5 506 aa15.05■□□□□ -0
CHD3-203ENST00000380358 SYCP1Q15431 976 aa15.05■□□□□ -0
CHD3-203ENST00000380358 LRRFIP1Q32MZ4 808 aaKnown RBP15.05■□□□□ -0
CHD3-203ENST00000380358 COG6Q9Y2V7 657 aa15.05■□□□□ -0
CHD3-203ENST00000380358 CEP162Q5TB80 1403 aa15.04■□□□□ -0
CHD3-203ENST00000380358 HMOX1P09601 288 aa15.04■□□□□ -0
CHD3-203ENST00000380358 TEX35Q5T0J7 233 aa15.04■□□□□ -0
CHD3-203ENST00000380358 MNS1Q8NEH6 495 aa15.04■□□□□ -0
CHD3-203ENST00000380358 DNAJC2Q99543 621 aaKnown RBP15.04■□□□□ -0
CHD3-203ENST00000380358 NUP155O75694 1391 aa15.04■□□□□ -0
CHD3-203ENST00000380358 H0YHG0 523 aa15.04■□□□□ -0
CHD3-203ENST00000380358 RALYLQ86SE5 291 aaKnown RBP15.04■□□□□ -0
CHD3-203ENST00000380358 SEPT11Q9NVA2 429 aaKnown RBP15.04■□□□□ -0
CHD3-203ENST00000380358 NEBLO76041 1014 aa15.03■□□□□ -0
CHD3-203ENST00000380358 HSP90AB3PQ58FF7 597 aa15.03■□□□□ -0
CHD3-203ENST00000380358 ENOX2Q16206 610 aaKnown RBP15.03■□□□□ -0
CHD3-203ENST00000380358 CCDC173Q0VFZ6 552 aa15.03■□□□□ -0
CHD3-203ENST00000380358 NLRP2Q9NX02 1062 aa15.03■□□□□ -0
CHD3-203ENST00000380358 SPINK5Q9NQ38 1064 aaPredicted RBP15.03■□□□□ -0
CHD3-203ENST00000380358 MPHOSPH10O00566 681 aaKnown RBP15.02□□□□□ -0.01
CHD3-203ENST00000380358 RUFY2Q8WXA3 655 aa15.02□□□□□ -0.01
CHD3-203ENST00000380358 ATP6V1DQ9Y5K8 247 aa15.02□□□□□ -0.01
CHD3-203ENST00000380358 SEPT7Q16181 437 aaKnown RBP15.01□□□□□ -0.01
CHD3-203ENST00000380358 CENPHQ9H3R5 247 aa15.01□□□□□ -0.01
CHD3-203ENST00000380358 SMC3Q9UQE7 1217 aa15.01□□□□□ -0.01
CHD3-203ENST00000380358 DDX11L8A8MPP1 907 aa15.01□□□□□ -0.01
CHD3-203ENST00000380358 CYB5RLQ6IPT4 315 aa15□□□□□ -0.01
CHD3-203ENST00000380358 CDR1P51861 262 aa15□□□□□ -0.01
CHD3-203ENST00000380358 TAX1BP1Q86VP1 789 aa15□□□□□ -0.01
CHD3-203ENST00000380358 ATF3P18847 181 aa15□□□□□ -0.01
CHD3-203ENST00000380358 BRMS1Q9HCU9 246 aa15□□□□□ -0.01
CHD3-203ENST00000380358 ECM2O94769 699 aaPredicted RBP15□□□□□ -0.01
CHD3-203ENST00000380358 CCDC191Q8NCU4 936 aa15□□□□□ -0.01
CHD3-203ENST00000380358 OLFM4Q6UX06 510 aa15□□□□□ -0.01
CHD3-203ENST00000380358 WDR78Q5VTH9 848 aa14.99□□□□□ -0.01
CHD3-203ENST00000380358 ZSCAN29Q8IWY8 852 aaPredicted RBP14.99□□□□□ -0.01
CHD3-203ENST00000380358 IPO9Q96P70 1041 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms