RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MAPK8IP2Q13387 824 aaPredicted RBP10.53□□□□□ -0.72
LIG3-202ENST00000378526 NEUROD2Q15784 382 aa10.53□□□□□ -0.72
LIG3-202ENST00000378526 OLFM4Q6UX06 510 aa10.53□□□□□ -0.72
LIG3-202ENST00000378526 HMGB1P1B2RPK0 211 aaPredicted RBP10.53□□□□□ -0.72
LIG3-202ENST00000378526 ZMYND15Q9H091 742 aa10.53□□□□□ -0.72
LIG3-202ENST00000378526 SARNPP82979 210 aaKnown RBP10.52□□□□□ -0.72
LIG3-202ENST00000378526 MAP9Q49MG5 647 aa10.52□□□□□ -0.72
LIG3-202ENST00000378526 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.52□□□□□ -0.727e-7■■■■■ 136.4
LIG3-202ENST00000378526 LIG1P18858 919 aa10.52□□□□□ -0.72
LIG3-202ENST00000378526 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.52□□□□□ -0.73
LIG3-202ENST00000378526 V9GYY5 206 aaPredicted RBP10.52□□□□□ -0.73
LIG3-202ENST00000378526 CGNQ9P2M7 1197 aaKnown RBP10.52□□□□□ -0.73
LIG3-202ENST00000378526 A0A0G2JS52 829 aa10.52□□□□□ -0.73
LIG3-202ENST00000378526 STAMBPO95630 424 aa10.52□□□□□ -0.73
LIG3-202ENST00000378526 MBD3O95983 291 aa10.52□□□□□ -0.73
LIG3-202ENST00000378526 KIF2AO00139 706 aaPredicted RBP10.51□□□□□ -0.73
LIG3-202ENST00000378526 REC8O95072 547 aa10.51□□□□□ -0.73
LIG3-202ENST00000378526 MARCH6O60337 910 aa10.51□□□□□ -0.73
LIG3-202ENST00000378526 ITPRIPQ8IWB1 547 aa10.51□□□□□ -0.73
LIG3-202ENST00000378526 PDE4AP27815 886 aa10.51□□□□□ -0.73
LIG3-202ENST00000378526 GOLGA6L9A6NEM1 432 aa10.51□□□□□ -0.73
LIG3-202ENST00000378526 TCHPQ9BT92 498 aa10.51□□□□□ -0.73
LIG3-202ENST00000378526 CPLX2Q6PUV4 134 aaKnown RBP10.5□□□□□ -0.73
LIG3-202ENST00000378526 DNAAF4Q8WXU2 420 aa10.5□□□□□ -0.73
LIG3-202ENST00000378526 HIRIP3Q9BW71 556 aaPredicted RBP10.5□□□□□ -0.73
LIG3-202ENST00000378526 AKAP17AQ02040 695 aaKnown RBP10.5□□□□□ -0.73
LIG3-202ENST00000378526 PDE3BQ13370 1112 aa10.5□□□□□ -0.73
LIG3-202ENST00000378526 KIF3CO14782 793 aa10.5□□□□□ -0.73
LIG3-202ENST00000378526 MNAT1P51948 309 aa10.5□□□□□ -0.73
LIG3-202ENST00000378526 LRRFIP1Q32MZ4 808 aaKnown RBP10.5□□□□□ -0.73
LIG3-202ENST00000378526 EPS15P42566 896 aa10.5□□□□□ -0.73
LIG3-202ENST00000378526 SEPT14Q6ZU15 432 aa10.5□□□□□ -0.73
LIG3-202ENST00000378526 TMCO3Q6UWJ1 677 aa10.49□□□□□ -0.73
LIG3-202ENST00000378526 TRIM29Q14134 588 aa10.49□□□□□ -0.73
LIG3-202ENST00000378526 EIF3AQ14152 1382 aaKnown RBP10.49□□□□□ -0.73
LIG3-202ENST00000378526 BICD2Q8TD16 824 aa10.49□□□□□ -0.73
LIG3-202ENST00000378526 MPHOSPH10O00566 681 aaKnown RBP10.49□□□□□ -0.73
LIG3-202ENST00000378526 MAP2K1Q02750 393 aaPredicted RBP10.49□□□□□ -0.73
LIG3-202ENST00000378526 LMOD3Q0VAK6 560 aa10.49□□□□□ -0.73
LIG3-202ENST00000378526 KTN1Q86UP2 1357 aaKnown RBP10.48□□□□□ -0.73
LIG3-202ENST00000378526 IVLP07476 585 aa10.48□□□□□ -0.73
LIG3-202ENST00000378526 NFKBIBQ15653 356 aa10.48□□□□□ -0.73
LIG3-202ENST00000378526 CCDC73Q6ZRK6 1079 aa10.48□□□□□ -0.73
LIG3-202ENST00000378526 PLEKHD1A6NEE1 506 aa10.48□□□□□ -0.73
LIG3-202ENST00000378526 TSPY4P0CV99 314 aa10.48□□□□□ -0.73
LIG3-202ENST00000378526 TSPY10P0CW01 314 aa10.48□□□□□ -0.73
LIG3-202ENST00000378526 FOXD4L1Q9NU39 408 aa10.48□□□□□ -0.73
LIG3-202ENST00000378526 TNNT1P13805 278 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 RNF168Q8IYW5 571 aaPredicted RBP10.47□□□□□ -0.73
LIG3-202ENST00000378526 OFD1O75665 1012 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 RBM25P49756 843 aaKnown RBP10.47□□□□□ -0.73
LIG3-202ENST00000378526 MIPOL1Q8TD10 442 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 PAF1Q8N7H5 531 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 MRVI1Q9Y6F6 885 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 PIP4K2AP48426 406 aaPredicted RBP10.47□□□□□ -0.73
LIG3-202ENST00000378526 SKIDA1Q1XH10 827 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 CARD11Q9BXL7 1154 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 TRIM5Q9C035 493 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 TSPY26PQ9H489 355 aa10.47□□□□□ -0.73
LIG3-202ENST00000378526 CFAP45Q9UL16 551 aa10.46□□□□□ -0.73
LIG3-202ENST00000378526 FILIP1LQ4L180 1135 aa10.46□□□□□ -0.73
LIG3-202ENST00000378526 DDX46Q7L014 1031 aaKnown RBP10.46□□□□□ -0.73
LIG3-202ENST00000378526 CRACR2AQ9BSW2 395 aa10.46□□□□□ -0.73
LIG3-202ENST00000378526 TXLNAP40222 546 aa10.46□□□□□ -0.74
LIG3-202ENST00000378526 DZIP1Q86YF9 867 aaKnown RBP10.46□□□□□ -0.74
LIG3-202ENST00000378526 SMC1AQ14683 1233 aaKnown RBP10.46□□□□□ -0.74
LIG3-202ENST00000378526 GIGYF2Q6Y7W6 1299 aaKnown RBP10.45□□□□□ -0.74
LIG3-202ENST00000378526 KRI1Q8N9T8 703 aaKnown RBP10.45□□□□□ -0.74
LIG3-202ENST00000378526 CCDC102AQ96A19 550 aa10.45□□□□□ -0.74
LIG3-202ENST00000378526 ANKRD18BA2A2Z9 1011 aa10.45□□□□□ -0.74
LIG3-202ENST00000378526 ANKRD62A6NC57 917 aa10.45□□□□□ -0.74
LIG3-202ENST00000378526 PSMD1Q99460 953 aa10.45□□□□□ -0.74
LIG3-202ENST00000378526 MCTP1Q6DN14 999 aa10.45□□□□□ -0.74
LIG3-202ENST00000378526 CCDC181Q5TID7 509 aa10.45□□□□□ -0.74
LIG3-202ENST00000378526 FOXD4L5Q5VV16 416 aaPredicted RBP10.45□□□□□ -0.74
LIG3-202ENST00000378526 FOXD4L4Q8WXT5 416 aaPredicted RBP10.45□□□□□ -0.74
LIG3-202ENST00000378526 ZNHIT6Q9NWK9 470 aaKnown RBP10.45□□□□□ -0.74
LIG3-202ENST00000378526 SYNE3Q6ZMZ3 975 aa10.44□□□□□ -0.74
LIG3-202ENST00000378526 RUFY2Q8WXA3 655 aa10.44□□□□□ -0.74
LIG3-202ENST00000378526 VGFO15240 615 aaPredicted RBP10.44□□□□□ -0.74
LIG3-202ENST00000378526 GORABQ5T7V8 394 aa10.44□□□□□ -0.74
LIG3-202ENST00000378526 GTPBP4Q9BZE4 634 aaKnown RBP10.44□□□□□ -0.74
LIG3-202ENST00000378526 RTF1Q92541 710 aaKnown RBP10.44□□□□□ -0.74
LIG3-202ENST00000378526 ESPNB1AK53 854 aa10.44□□□□□ -0.74
LIG3-202ENST00000378526 PDILTQ8N807 584 aa10.44□□□□□ -0.74
LIG3-202ENST00000378526 FAM184BQ9ULE4 1060 aa10.44□□□□□ -0.74
LIG3-202ENST00000378526 E9PSI1 815 aa10.44□□□□□ -0.74
LIG3-202ENST00000378526 RSF1Q96T23 1441 aaPredicted RBP10.44□□□□□ -0.74
LIG3-202ENST00000378526 MTUS2Q5JR59 1369 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 TRAK2O60296 914 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 C6orf163Q5TEZ5 329 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 LMOD2Q6P5Q4 547 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIG3-202ENST00000378526 DYNC1I1O14576 645 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 BRD2P25440 801 aaKnown RBP10.43□□□□□ -0.74
LIG3-202ENST00000378526 NBPF1Q3BBV0 1214 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 TCEAL9Q9UHQ7 104 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 TAX1BP1Q86VP1 789 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 DDX23Q9BUQ8 820 aaKnown RBP10.43□□□□□ -0.74
LIG3-202ENST00000378526 ZKSCAN1P17029 563 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms