RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
NPHP4-201ENST00000378156 NGEFQ8N5V2 710 aa18.75■□□□□ 0.59
NPHP4-201ENST00000378156 DIAPH1O60610 1272 aaKnown RBP18.75■□□□□ 0.59
NPHP4-201ENST00000378156 C9orf84Q5VXU9 1444 aa18.75■□□□□ 0.59
NPHP4-201ENST00000378156 SUPT6HQ7KZ85 1726 aaKnown RBP18.75■□□□□ 0.59
NPHP4-201ENST00000378156 EPRSP07814 1512 aaKnown RBP18.74■□□□□ 0.59
NPHP4-201ENST00000378156 MAP3K1Q13233 1512 aa18.74■□□□□ 0.59
NPHP4-201ENST00000378156 TMEM132EQ6IEE7 984 aa18.74■□□□□ 0.59
NPHP4-201ENST00000378156 HECW1Q76N89 1606 aa18.73■□□□□ 0.59
NPHP4-201ENST00000378156 ZKSCAN2Q63HK3 967 aa18.72■□□□□ 0.59
NPHP4-201ENST00000378156 CFAP70Q5T0N1 1121 aa18.72■□□□□ 0.59
NPHP4-201ENST00000378156 GBP4Q96PP9 640 aa18.72■□□□□ 0.59
NPHP4-201ENST00000378156 CHMP3Q9Y3E7 222 aa18.71■□□□□ 0.59
NPHP4-201ENST00000378156 USP35Q9P2H5 1018 aa18.71■□□□□ 0.59
NPHP4-201ENST00000378156 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
NPHP4-201ENST00000378156 TRIM6-TRIM34B2RNG4 842 aa18.69■□□□□ 0.58
NPHP4-201ENST00000378156 GORABQ5T7V8 394 aa18.69■□□□□ 0.58
NPHP4-201ENST00000378156 PPP2R1AP30153 589 aa18.69■□□□□ 0.58
NPHP4-201ENST00000378156 TEFQ10587 303 aa18.69■□□□□ 0.58
NPHP4-201ENST00000378156 GPATCH3Q96I76 525 aa18.68■□□□□ 0.58
NPHP4-201ENST00000378156 FOXD4L1Q9NU39 408 aa18.68■□□□□ 0.58
NPHP4-201ENST00000378156 BIVM-ERCC5R4GMW8 1640 aa18.68■□□□□ 0.58
NPHP4-201ENST00000378156 KIAA0586Q9BVV6 1533 aa18.68■□□□□ 0.58
NPHP4-201ENST00000378156 TAF7LQ5H9L4 462 aa18.68■□□□□ 0.58
NPHP4-201ENST00000378156 C1orf141Q5JVX7 400 aa18.68■□□□□ 0.58
NPHP4-201ENST00000378156 RIPK4P57078 832 aa18.67■□□□□ 0.58
NPHP4-201ENST00000378156 ANKRD30BQ9BXX2 1392 aa18.67■□□□□ 0.58
NPHP4-201ENST00000378156 PLEKHH2Q8IVE3 1493 aa18.67■□□□□ 0.58
NPHP4-201ENST00000378156 RUNDC1Q96C34 613 aa18.67■□□□□ 0.58
NPHP4-201ENST00000378156 CABP2Q9NPB3 220 aa18.67■□□□□ 0.58
NPHP4-201ENST00000378156 PSME1Q06323 249 aa18.66■□□□□ 0.58
NPHP4-201ENST00000378156 KIAA2012Q0VF49 1180 aa18.66■□□□□ 0.58
NPHP4-201ENST00000378156 SCAPERQ9BY12 1400 aa18.66■□□□□ 0.58
NPHP4-201ENST00000378156 GGNBP2Q9H3C7 697 aa18.66■□□□□ 0.58
NPHP4-201ENST00000378156 ROCK1Q13464 1354 aa18.66■□□□□ 0.58
NPHP4-201ENST00000378156 PANK1Q8TE04 598 aa18.65■□□□□ 0.58
NPHP4-201ENST00000378156 ANKRD45Q5TZF3 282 aa18.63■□□□□ 0.57
NPHP4-201ENST00000378156 PTPN23Q9H3S7 1636 aa18.63■□□□□ 0.57
NPHP4-201ENST00000378156 UNC13AQ9UPW8 1703 aa18.63■□□□□ 0.57
NPHP4-201ENST00000378156 SMG6Q86US8 1419 aaKnown RBP18.62■□□□□ 0.57
NPHP4-201ENST00000378156 DZIP1LQ8IYY4 767 aaKnown RBP18.62■□□□□ 0.57
NPHP4-201ENST00000378156 GOLGA6L3A6NEY3 463 aa18.62■□□□□ 0.57
NPHP4-201ENST00000378156 ABCC5O15440 1437 aa18.62■□□□□ 0.57
NPHP4-201ENST00000378156 GSE1Q14687 1217 aa18.61■□□□□ 0.57
NPHP4-201ENST00000378156 MTHFSP49914 203 aa18.6■□□□□ 0.57
NPHP4-201ENST00000378156 DRC7Q8IY82 874 aa18.6■□□□□ 0.57
NPHP4-201ENST00000378156 IQGAP2Q13576 1575 aa18.6■□□□□ 0.57
NPHP4-201ENST00000378156 MAPKBP1O60336 1514 aa18.6■□□□□ 0.57
NPHP4-201ENST00000378156 EVA1CP58658 441 aa18.6■□□□□ 0.57
NPHP4-201ENST00000378156 LAMC3Q9Y6N6 1575 aa18.6■□□□□ 0.57
NPHP4-201ENST00000378156 TULP1O00294 542 aaPredicted RBP18.59■□□□□ 0.57
NPHP4-201ENST00000378156 TCP11L2Q8N4U5 519 aa18.59■□□□□ 0.57
NPHP4-201ENST00000378156 DDX19BQ9UMR2 479 aa18.59■□□□□ 0.57
NPHP4-201ENST00000378156 CUL7Q14999 1698 aa18.58■□□□□ 0.57
NPHP4-201ENST00000378156 RAPGEF3O95398 923 aa18.58■□□□□ 0.56
NPHP4-201ENST00000378156 GNL2Q13823 731 aaKnown RBP18.58■□□□□ 0.56
NPHP4-201ENST00000378156 SLC52A1Q9NWF4 448 aa18.58■□□□□ 0.56
NPHP4-201ENST00000378156 SYAP1Q96A49 352 aaPredicted RBP18.58■□□□□ 0.56
NPHP4-201ENST00000378156 HMOX1P09601 288 aa18.57■□□□□ 0.56
NPHP4-201ENST00000378156 API5Q9BZZ5 524 aaKnown RBP18.57■□□□□ 0.56
NPHP4-201ENST00000378156 TXNDC2Q86VQ3 553 aa18.57■□□□□ 0.56
NPHP4-201ENST00000378156 EIF2S2P20042 333 aaKnown RBP18.57■□□□□ 0.56
NPHP4-201ENST00000378156 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.57■□□□□ 0.56
NPHP4-201ENST00000378156 ISY1Q9ULR0 285 aaKnown RBP18.57■□□□□ 0.56
NPHP4-201ENST00000378156 PTPRKQ15262 1439 aa18.56■□□□□ 0.56
NPHP4-201ENST00000378156 GTF2E1P29083 439 aaPredicted RBP18.56■□□□□ 0.56
NPHP4-201ENST00000378156 GNAI1P63096 354 aa18.55■□□□□ 0.56
NPHP4-201ENST00000378156 TTC5Q8N0Z6 440 aa18.55■□□□□ 0.56
NPHP4-201ENST00000378156 RSPH6AQ9H0K4 717 aa18.55■□□□□ 0.56
NPHP4-201ENST00000378156 NOL8Q76FK4 1167 aaKnown RBP18.55■□□□□ 0.56
NPHP4-201ENST00000378156 PLB1Q6P1J6 1458 aa18.55■□□□□ 0.56
NPHP4-201ENST00000378156 SLC12A5Q9H2X9 1139 aa18.54■□□□□ 0.56
NPHP4-201ENST00000378156 ERBINQ96RT1 1412 aa18.54■□□□□ 0.56
NPHP4-201ENST00000378156 BCAR3O75815 825 aa18.54■□□□□ 0.56
NPHP4-201ENST00000378156 NLRP6P59044 892 aa18.54■□□□□ 0.56
NPHP4-201ENST00000378156 PRAM1Q96QH2 718 aa18.54■□□□□ 0.56
NPHP4-201ENST00000378156 NEXNQ0ZGT2 675 aa18.54■□□□□ 0.56
NPHP4-201ENST00000378156 NCOA1Q15788 1441 aa18.53■□□□□ 0.56
NPHP4-201ENST00000378156 TMX4Q9H1E5 349 aaPredicted RBP18.53■□□□□ 0.56
NPHP4-201ENST00000378156 URB2Q14146 1524 aaKnown RBP18.53■□□□□ 0.56
NPHP4-201ENST00000378156 CAMSAP2Q08AD1 1489 aa18.53■□□□□ 0.56
NPHP4-201ENST00000378156 ATF3P18847 181 aa18.53■□□□□ 0.56
NPHP4-201ENST00000378156 ARHGEF11O15085 1522 aa18.53■□□□□ 0.56
NPHP4-201ENST00000378156 NECTIN2Q92692 538 aa18.51■□□□□ 0.55
NPHP4-201ENST00000378156 C9orf78Q9NZ63 289 aaPredicted RBP18.51■□□□□ 0.55
NPHP4-201ENST00000378156 ST18O60284 1047 aa18.51■□□□□ 0.55
NPHP4-201ENST00000378156 NFKBIBQ15653 356 aa18.51■□□□□ 0.55
NPHP4-201ENST00000378156 RILPL2Q969X0 211 aa18.51■□□□□ 0.55
NPHP4-201ENST00000378156 KIF16BQ96L93 1317 aa18.51■□□□□ 0.55
NPHP4-201ENST00000378156 BACH2Q9BYV9 841 aa18.5■□□□□ 0.55
NPHP4-201ENST00000378156 LNPKQ9C0E8 428 aa18.5■□□□□ 0.55
NPHP4-201ENST00000378156 HTATSF1O43719 755 aaKnown RBP18.5■□□□□ 0.55
NPHP4-201ENST00000378156 FKBP5Q13451 457 aaPredicted RBP18.5■□□□□ 0.55
NPHP4-201ENST00000378156 NUTM2GQ5VZR2 741 aa18.5■□□□□ 0.55
NPHP4-201ENST00000378156 TSPYL4Q9UJ04 414 aa18.5■□□□□ 0.55
NPHP4-201ENST00000378156 RPRD2Q5VT52 1461 aaKnown RBP18.49■□□□□ 0.55
NPHP4-201ENST00000378156 RAPGEF4Q8WZA2 1011 aa18.49■□□□□ 0.55
NPHP4-201ENST00000378156 FOXD4L5Q5VV16 416 aaPredicted RBP18.48■□□□□ 0.55
NPHP4-201ENST00000378156 FOXD4L4Q8WXT5 416 aaPredicted RBP18.48■□□□□ 0.55
NPHP4-201ENST00000378156 HSP90AA2PQ14568 343 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms