RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 NOL10Q9BSC4 688 aaKnown RBP16.79■□□□□ 0.28
COL4A1-201ENST00000375820 ZKSCAN2Q63HK3 967 aa16.78■□□□□ 0.28
COL4A1-201ENST00000375820 VPS37CA5D8V6 355 aaPredicted RBP16.78■□□□□ 0.28
COL4A1-201ENST00000375820 HOMER1Q86YM7 354 aa16.78■□□□□ 0.28
COL4A1-201ENST00000375820 IFIT2P09913 472 aaKnown RBP16.77■□□□□ 0.28
COL4A1-201ENST00000375820 CENPQQ7L2Z9 268 aaPredicted RBP16.77■□□□□ 0.28
COL4A1-201ENST00000375820 ZNF428Q96B54 188 aa16.77■□□□□ 0.28
COL4A1-201ENST00000375820 KRI1Q8N9T8 703 aaKnown RBP16.77■□□□□ 0.28
COL4A1-201ENST00000375820 CARMIL2Q6F5E8 1435 aa16.77■□□□□ 0.27
COL4A1-201ENST00000375820 APAF1O14727 1248 aa16.77■□□□□ 0.27
COL4A1-201ENST00000375820 CPLX1O14810 134 aa16.77■□□□□ 0.27
COL4A1-201ENST00000375820 FAM13BQ9NYF5 915 aa16.77■□□□□ 0.27
COL4A1-201ENST00000375820 GSE1Q14687 1217 aa16.77■□□□□ 0.27
COL4A1-201ENST00000375820 MYBBP1AQ9BQG0 1328 aaKnown RBP16.76■□□□□ 0.27
COL4A1-201ENST00000375820 NAP1L1P55209 391 aaKnown RBP16.76■□□□□ 0.27
COL4A1-201ENST00000375820 RRP1P56182 461 aaKnown RBP16.76■□□□□ 0.27
COL4A1-201ENST00000375820 AMOTL1Q8IY63 956 aa16.76■□□□□ 0.27
COL4A1-201ENST00000375820 KIF15Q9NS87 1388 aa16.75■□□□□ 0.27
COL4A1-201ENST00000375820 VPS8Q8N3P4 1428 aa16.75■□□□□ 0.27
COL4A1-201ENST00000375820 NEXNQ0ZGT2 675 aa16.75■□□□□ 0.27
COL4A1-201ENST00000375820 NUTM2GQ5VZR2 741 aa16.74■□□□□ 0.27
COL4A1-201ENST00000375820 CCDC70Q6NSX1 233 aa16.74■□□□□ 0.27
COL4A1-201ENST00000375820 AIMP1Q12904 312 aaKnown RBP16.74■□□□□ 0.27
COL4A1-201ENST00000375820 MEX3CQ5U5Q3 659 aaKnown RBP16.73■□□□□ 0.27
COL4A1-201ENST00000375820 ATP6V1DQ9Y5K8 247 aa16.73■□□□□ 0.27
COL4A1-201ENST00000375820 FMN1Q68DA7 1419 aa16.72■□□□□ 0.27
COL4A1-201ENST00000375820 HMOX1P09601 288 aa16.72■□□□□ 0.27
COL4A1-201ENST00000375820 SKIDA1Q1XH10 827 aa16.72■□□□□ 0.27
COL4A1-201ENST00000375820 TTLL5Q6EMB2 1281 aa16.72■□□□□ 0.27
COL4A1-201ENST00000375820 FKBP5Q13451 457 aaPredicted RBP16.72■□□□□ 0.27
COL4A1-201ENST00000375820 CWC22Q9HCG8 908 aaKnown RBP16.72■□□□□ 0.27
COL4A1-201ENST00000375820 USP35Q9P2H5 1018 aa16.72■□□□□ 0.27
COL4A1-201ENST00000375820 PDE3BQ13370 1112 aa16.72■□□□□ 0.27
COL4A1-201ENST00000375820 FHOD3Q2V2M9 1422 aa16.71■□□□□ 0.27
COL4A1-201ENST00000375820 ZKSCAN1P17029 563 aaPredicted RBP16.71■□□□□ 0.27
COL4A1-201ENST00000375820 RIPK4P57078 832 aa16.71■□□□□ 0.27
COL4A1-201ENST00000375820 FAM177BA6PVY3 158 aa16.71■□□□□ 0.27
COL4A1-201ENST00000375820 CECR2Q9BXF3 1484 aa16.7■□□□□ 0.26
COL4A1-201ENST00000375820 CCDC27Q2M243 656 aa16.7■□□□□ 0.26
COL4A1-201ENST00000375820 NEUROD6Q96NK8 337 aa16.7■□□□□ 0.26
COL4A1-201ENST00000375820 IPO7O95373 1038 aaKnown RBP16.7■□□□□ 0.26
COL4A1-201ENST00000375820 CCDC43Q96MW1 224 aaKnown RBP16.7■□□□□ 0.26
COL4A1-201ENST00000375820 E9PSI1 815 aa16.7■□□□□ 0.26
COL4A1-201ENST00000375820 CGNL1Q0VF96 1302 aa16.7■□□□□ 0.26
COL4A1-201ENST00000375820 CPLX2Q6PUV4 134 aaKnown RBP16.69■□□□□ 0.26
COL4A1-201ENST00000375820 LNPKQ9C0E8 428 aa16.69■□□□□ 0.26
COL4A1-201ENST00000375820 GPS2Q13227 327 aa16.69■□□□□ 0.26
COL4A1-201ENST00000375820 TRDNQ13061 729 aa16.69■□□□□ 0.26
COL4A1-201ENST00000375820 RUFY2Q8WXA3 655 aa16.69■□□□□ 0.26
COL4A1-201ENST00000375820 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.68■□□□□ 0.26
COL4A1-201ENST00000375820 G3BP1Q13283 466 aaKnown RBP eCLIP16.68■□□□□ 0.26
COL4A1-201ENST00000375820 SKOR2Q2VWA4 1001 aaPredicted RBP16.68■□□□□ 0.26
COL4A1-201ENST00000375820 PSME1Q06323 249 aa16.67■□□□□ 0.26
COL4A1-201ENST00000375820 ERICH2A1L162 156 aa16.67■□□□□ 0.26
COL4A1-201ENST00000375820 IFT57Q9NWB7 429 aa16.67■□□□□ 0.26
COL4A1-201ENST00000375820 PDILTQ8N807 584 aa16.67■□□□□ 0.26
COL4A1-201ENST00000375820 WASHC4Q2M389 1173 aa16.67■□□□□ 0.26
COL4A1-201ENST00000375820 ZFYVE27Q5T4F4 411 aa16.67■□□□□ 0.26
COL4A1-201ENST00000375820 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.67■□□□□ 0.26
COL4A1-201ENST00000375820 CCDC47Q96A33 483 aaKnown RBP16.67■□□□□ 0.26
COL4A1-201ENST00000375820 SMC3Q9UQE7 1217 aa16.67■□□□□ 0.26
COL4A1-201ENST00000375820 ANKRD20A12PQ8NF67 263 aa16.66■□□□□ 0.26
COL4A1-201ENST00000375820 SASS6Q6UVJ0 657 aa16.66■□□□□ 0.26
COL4A1-201ENST00000375820 RSPH6AQ9H0K4 717 aa16.66■□□□□ 0.26
COL4A1-201ENST00000375820 CT47A1Q5JQC4 288 aaPredicted RBP16.66■□□□□ 0.26
COL4A1-201ENST00000375820 EVC2Q86UK5 1308 aa16.65■□□□□ 0.26
COL4A1-201ENST00000375820 CCDC144AA2RUR9 1427 aa16.65■□□□□ 0.26
COL4A1-201ENST00000375820 DIAPH1O60610 1272 aaKnown RBP16.65■□□□□ 0.26
COL4A1-201ENST00000375820 REC8O95072 547 aa16.65■□□□□ 0.26
COL4A1-201ENST00000375820 STK11IPQ8N1F8 1099 aa16.65■□□□□ 0.26
COL4A1-201ENST00000375820 DZIP1LQ8IYY4 767 aaKnown RBP16.64■□□□□ 0.26
COL4A1-201ENST00000375820 TSPYL4Q9UJ04 414 aa16.64■□□□□ 0.26
COL4A1-201ENST00000375820 PHLDB1Q86UU1 1377 aa16.64■□□□□ 0.25
COL4A1-201ENST00000375820 CCDC88BA6NC98 1476 aa16.64■□□□□ 0.25
COL4A1-201ENST00000375820 RNF214Q8ND24 703 aa16.64■□□□□ 0.25
COL4A1-201ENST00000375820 RBM33Q96EV2 1170 aaKnown RBP16.63■□□□□ 0.25
COL4A1-201ENST00000375820 PANK1Q8TE04 598 aa16.63■□□□□ 0.25
COL4A1-201ENST00000375820 ATP2B1P20020 1258 aa16.62■□□□□ 0.25
COL4A1-201ENST00000375820 LRRFIP1Q32MZ4 808 aaKnown RBP16.62■□□□□ 0.25
COL4A1-201ENST00000375820 RIC3Q7Z5B4 369 aa16.62■□□□□ 0.25
COL4A1-201ENST00000375820 DDX19BQ9UMR2 479 aa16.62■□□□□ 0.25
COL4A1-201ENST00000375820 RUFY1Q96T51 708 aa16.62■□□□□ 0.25
COL4A1-201ENST00000375820 PHF23Q9BUL5 403 aaPredicted RBP16.62■□□□□ 0.25
COL4A1-201ENST00000375820 IKQ13123 557 aaPredicted RBP16.61■□□□□ 0.25
COL4A1-201ENST00000375820 ODF2Q5BJF6 829 aa16.61■□□□□ 0.25
COL4A1-201ENST00000375820 RNF20Q5VTR2 975 aa16.61■□□□□ 0.25
COL4A1-201ENST00000375820 PRKRIP1Q9H875 184 aaPredicted RBP16.61■□□□□ 0.25
COL4A1-201ENST00000375820 RRP12Q5JTH9 1297 aaKnown RBP16.61■□□□□ 0.25
COL4A1-201ENST00000375820 HOOK1Q9UJC3 728 aaKnown RBP16.61■□□□□ 0.25
COL4A1-201ENST00000375820 DDX58O95786 925 aaKnown RBP16.6■□□□□ 0.25
COL4A1-201ENST00000375820 EPS15P42566 896 aa16.6■□□□□ 0.25
COL4A1-201ENST00000375820 DHX37Q8IY37 1157 aaKnown RBP16.6■□□□□ 0.25
COL4A1-201ENST00000375820 USP47Q96K76 1375 aa16.6■□□□□ 0.25
COL4A1-201ENST00000375820 HSP90AB2PQ58FF8 381 aa16.59■□□□□ 0.25
COL4A1-201ENST00000375820 MNS1Q8NEH6 495 aa16.59■□□□□ 0.25
COL4A1-201ENST00000375820 TEX35Q5T0J7 233 aa16.59■□□□□ 0.25
COL4A1-201ENST00000375820 CEBPZQ03701 1054 aaKnown RBP16.58■□□□□ 0.25
COL4A1-201ENST00000375820 INTS3Q68E01 1043 aaKnown RBP16.58■□□□□ 0.25
COL4A1-201ENST00000375820 CCDC73Q6ZRK6 1079 aa16.58■□□□□ 0.24
COL4A1-201ENST00000375820 DNAJC2Q99543 621 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms