RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 SLC52A1Q9NWF4 448 aa14.54□□□□□ -0.08
SYNE1-204ENST00000367248 FAM177BA6PVY3 158 aa14.53□□□□□ -0.08
SYNE1-204ENST00000367248 TRIM6-TRIM34B2RNG4 842 aa14.53□□□□□ -0.08
SYNE1-204ENST00000367248 E9PSI1 815 aa14.53□□□□□ -0.08
SYNE1-204ENST00000367248 TCERG1O14776 1098 aaKnown RBP14.53□□□□□ -0.08
SYNE1-204ENST00000367248 CCDC7Q96M83 1385 aa14.53□□□□□ -0.08
SYNE1-204ENST00000367248 THEMISQ8N1K5 641 aaPredicted RBP14.52□□□□□ -0.08
SYNE1-204ENST00000367248 GGNBP2Q9H3C7 697 aa14.52□□□□□ -0.08
SYNE1-204ENST00000367248 CABP2Q9NPB3 220 aa14.52□□□□□ -0.08
SYNE1-204ENST00000367248 VPS53Q5VIR6 699 aa14.52□□□□□ -0.09
SYNE1-204ENST00000367248 SLC26A8Q96RN1 970 aa14.51□□□□□ -0.09
SYNE1-204ENST00000367248 BCL2L13Q9BXK5 485 aa14.51□□□□□ -0.09
SYNE1-204ENST00000367248 EHBP1L1Q8N3D4 1523 aa14.51□□□□□ -0.09
SYNE1-204ENST00000367248 PTMAP06454 111 aaKnown RBP14.51□□□□□ -0.09
SYNE1-204ENST00000367248 GOLGA6L4A6NEF3 574 aa14.51□□□□□ -0.09
SYNE1-204ENST00000367248 NLRP6P59044 892 aa14.51□□□□□ -0.09
SYNE1-204ENST00000367248 XPCQ01831 940 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-204ENST00000367248 SAMD1Q6SPF0 538 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-204ENST00000367248 RAPGEF4Q8WZA2 1011 aa14.51□□□□□ -0.09
SYNE1-204ENST00000367248 LAMC3Q9Y6N6 1575 aa14.5□□□□□ -0.09
SYNE1-204ENST00000367248 NOP58Q9Y2X3 529 aaKnown RBP14.49□□□□□ -0.09
SYNE1-204ENST00000367248 TRIM44Q96DX7 344 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-204ENST00000367248 ABTB2Q8N961 1025 aa14.48□□□□□ -0.09
SYNE1-204ENST00000367248 ZKSCAN2Q63HK3 967 aa14.48□□□□□ -0.09
SYNE1-204ENST00000367248 NBPF1Q3BBV0 1214 aa14.47□□□□□ -0.09
SYNE1-204ENST00000367248 GPATCH3Q96I76 525 aa14.47□□□□□ -0.09
SYNE1-204ENST00000367248 RIPK4P57078 832 aa14.47□□□□□ -0.09
SYNE1-204ENST00000367248 NOL8Q76FK4 1167 aaKnown RBP14.47□□□□□ -0.09
SYNE1-204ENST00000367248 KIAA1107Q9UPP5 1409 aa14.47□□□□□ -0.09
SYNE1-204ENST00000367248 HMOX1P09601 288 aa14.47□□□□□ -0.09
SYNE1-204ENST00000367248 ANO8Q9HCE9 1232 aaPredicted RBP14.46□□□□□ -0.09
SYNE1-204ENST00000367248 ZNF428Q96B54 188 aa14.46□□□□□ -0.09
SYNE1-204ENST00000367248 RBM33Q96EV2 1170 aaKnown RBP14.46□□□□□ -0.09
SYNE1-204ENST00000367248 ZBED9Q6R2W3 1325 aa14.46□□□□□ -0.09
SYNE1-204ENST00000367248 EPRSP07814 1512 aaKnown RBP14.45□□□□□ -0.1
SYNE1-204ENST00000367248 PRAM1Q96QH2 718 aa14.45□□□□□ -0.1
SYNE1-204ENST00000367248 AIMP1Q12904 312 aaKnown RBP14.45□□□□□ -0.1
SYNE1-204ENST00000367248 RBM42Q9BTD8 480 aaKnown RBP14.45□□□□□ -0.1
SYNE1-204ENST00000367248 HSP90B1P14625 803 aaKnown RBP14.45□□□□□ -0.1
SYNE1-204ENST00000367248 VPS37DQ86XT2 251 aa14.44□□□□□ -0.1
SYNE1-204ENST00000367248 RUNDC1Q96C34 613 aa14.44□□□□□ -0.1
SYNE1-204ENST00000367248 GRIN2AQ12879 1464 aa14.44□□□□□ -0.1
SYNE1-204ENST00000367248 MAGI1Q96QZ7 1491 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-204ENST00000367248 GPRASP1Q5JY77 1395 aa14.44□□□□□ -0.1
SYNE1-204ENST00000367248 DAPK1P53355 1430 aa14.44□□□□□ -0.1
SYNE1-204ENST00000367248 POGZQ7Z3K3 1410 aa14.43□□□□□ -0.1
SYNE1-204ENST00000367248 TRIM34Q9BYJ4 488 aa14.43□□□□□ -0.1
SYNE1-204ENST00000367248 NEXNQ0ZGT2 675 aa14.43□□□□□ -0.1
SYNE1-204ENST00000367248 DDX54Q8TDD1 881 aaKnown RBP14.43□□□□□ -0.1
SYNE1-204ENST00000367248 RPGRIP1LQ68CZ1 1315 aa14.43□□□□□ -0.1
SYNE1-204ENST00000367248 API5Q9BZZ5 524 aaKnown RBP14.42□□□□□ -0.1
SYNE1-204ENST00000367248 HECW1Q76N89 1606 aa14.42□□□□□ -0.1
SYNE1-204ENST00000367248 ANKLE2Q86XL3 938 aa14.42□□□□□ -0.1
SYNE1-204ENST00000367248 GNAI1P63096 354 aa14.41□□□□□ -0.1
SYNE1-204ENST00000367248 NBPF8Q3BBV2 869 aa14.41□□□□□ -0.1
SYNE1-204ENST00000367248 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.41□□□□□ -0.1
SYNE1-204ENST00000367248 C9orf78Q9NZ63 289 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-204ENST00000367248 CD109Q6YHK3 1445 aa14.41□□□□□ -0.1
SYNE1-204ENST00000367248 PLB1Q6P1J6 1458 aa14.41□□□□□ -0.1
SYNE1-204ENST00000367248 CDK13Q14004 1512 aaKnown RBP14.41□□□□□ -0.1
SYNE1-204ENST00000367248 MFAP1P55081 439 aaKnown RBP14.4□□□□□ -0.1
SYNE1-204ENST00000367248 WASHC2AQ641Q2 1341 aa14.4□□□□□ -0.1
SYNE1-204ENST00000367248 URB2Q14146 1524 aaKnown RBP14.4□□□□□ -0.1
SYNE1-204ENST00000367248 CWC22Q9HCG8 908 aaKnown RBP14.4□□□□□ -0.1
SYNE1-204ENST00000367248 COG6Q9Y2V7 657 aa14.4□□□□□ -0.1
SYNE1-204ENST00000367248 CNTLNQ9NXG0 1405 aa14.4□□□□□ -0.1
SYNE1-204ENST00000367248 MTHFSP49914 203 aa14.4□□□□□ -0.1
SYNE1-204ENST00000367248 ANKRD30BQ9BXX2 1392 aa14.4□□□□□ -0.1
SYNE1-204ENST00000367248 PLIN1O60240 522 aa14.4□□□□□ -0.1
SYNE1-204ENST00000367248 PDE4CQ08493 712 aa14.39□□□□□ -0.11
SYNE1-204ENST00000367248 TIAM1Q13009 1591 aa14.39□□□□□ -0.11
SYNE1-204ENST00000367248 CEBPAP49715 358 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-204ENST00000367248 TOM1L2Q6ZVM7 507 aa14.39□□□□□ -0.11
SYNE1-204ENST00000367248 RRP1P56182 461 aaKnown RBP14.39□□□□□ -0.11
SYNE1-204ENST00000367248 RASSF8Q8NHQ8 419 aa14.39□□□□□ -0.11
SYNE1-204ENST00000367248 MARCH6O60337 910 aa14.39□□□□□ -0.11
SYNE1-204ENST00000367248 ADAMTS2O95450 1211 aa14.38□□□□□ -0.11
SYNE1-204ENST00000367248 IQGAP2Q13576 1575 aa14.38□□□□□ -0.11
SYNE1-204ENST00000367248 DNTTIP2Q5QJE6 756 aaKnown RBP14.38□□□□□ -0.11
SYNE1-204ENST00000367248 CTDP1Q9Y5B0 961 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-204ENST00000367248 RBM19Q9Y4C8 960 aaKnown RBP14.38□□□□□ -0.11
SYNE1-204ENST00000367248 SLC12A5Q9H2X9 1139 aa14.38□□□□□ -0.11
SYNE1-204ENST00000367248 ZNF608Q9ULD9 1512 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-204ENST00000367248 ROCK1Q13464 1354 aa14.38□□□□□ -0.11
SYNE1-204ENST00000367248 FKBP5Q13451 457 aaPredicted RBP14.37□□□□□ -0.11
SYNE1-204ENST00000367248 NOL10Q9BSC4 688 aaKnown RBP14.37□□□□□ -0.11
SYNE1-204ENST00000367248 TSPYL4Q9UJ04 414 aa14.37□□□□□ -0.11
SYNE1-204ENST00000367248 DDX58O95786 925 aaKnown RBP14.37□□□□□ -0.11
SYNE1-204ENST00000367248 ARHGEF11O15085 1522 aa14.37□□□□□ -0.11
SYNE1-204ENST00000367248 EXOC6Q8TAG9 804 aa14.36□□□□□ -0.11
SYNE1-204ENST00000367248 RILPL2Q969X0 211 aa14.36□□□□□ -0.11
SYNE1-204ENST00000367248 DDX19BQ9UMR2 479 aa14.36□□□□□ -0.11
SYNE1-204ENST00000367248 CABP1Q9NZU7 370 aa14.36□□□□□ -0.11
SYNE1-204ENST00000367248 DZIP1LQ8IYY4 767 aaKnown RBP14.36□□□□□ -0.11
SYNE1-204ENST00000367248 CCDC141Q6ZP82 1450 aa14.35□□□□□ -0.11
SYNE1-204ENST00000367248 CREBRFQ8IUR6 639 aa14.35□□□□□ -0.11
SYNE1-204ENST00000367248 ZNF692Q9BU19 519 aaPredicted RBP14.35□□□□□ -0.11
SYNE1-204ENST00000367248 CENPQQ7L2Z9 268 aaPredicted RBP14.35□□□□□ -0.11
SYNE1-204ENST00000367248 PPP2R1AP30153 589 aa14.35□□□□□ -0.11
SYNE1-204ENST00000367248 CDK19Q9BWU1 502 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms