RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.07□□□□□ -0.64
RNU4-28P-201ENST00000364739 BARGINQ6ZT62 677 aa11.06□□□□□ -0.64
RNU4-28P-201ENST00000364739 LRCH3Q96II8 777 aa11.06□□□□□ -0.64
RNU4-28P-201ENST00000364739 RNF40O75150 1001 aa11.05□□□□□ -0.64
RNU4-28P-201ENST00000364739 MINK1Q8N4C8 1332 aaPredicted RBP11.05□□□□□ -0.64
RNU4-28P-201ENST00000364739 DNAJB2P25686 324 aa11.04□□□□□ -0.64
RNU4-28P-201ENST00000364739 HDGFP51858 240 aaKnown RBP11.04□□□□□ -0.64
RNU4-28P-201ENST00000364739 CCDC102AQ96A19 550 aa11.04□□□□□ -0.64
RNU4-28P-201ENST00000364739 WBP1LQ9NX94 342 aa11.04□□□□□ -0.64
RNU4-28P-201ENST00000364739 HPS5Q9UPZ3 1129 aa11.03□□□□□ -0.64
RNU4-28P-201ENST00000364739 TMEM134Q9H6X4 195 aa11.02□□□□□ -0.65
RNU4-28P-201ENST00000364739 KCNC4Q03721 635 aa11.01□□□□□ -0.65
RNU4-28P-201ENST00000364739 PPP4CP60510 307 aa11□□□□□ -0.65
RNU4-28P-201ENST00000364739 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.99□□□□□ -0.65
RNU4-28P-201ENST00000364739 SLC24A3Q9HC58 644 aa10.99□□□□□ -0.65
RNU4-28P-201ENST00000364739 TSR3Q9UJK0 312 aaKnown RBP10.99□□□□□ -0.65
RNU4-28P-201ENST00000364739 MDM2Q00987 491 aaPredicted RBP10.95□□□□□ -0.66
RNU4-28P-201ENST00000364739 SLF2Q8IX21 1173 aa10.95□□□□□ -0.66
RNU4-28P-201ENST00000364739 SLC10A3P09131 477 aa10.94□□□□□ -0.66
RNU4-28P-201ENST00000364739 DAXXQ9UER7 740 aaPredicted RBP10.94□□□□□ -0.66
RNU4-28P-201ENST00000364739 REPIN1Q9BWE0 567 aaKnown RBP10.93□□□□□ -0.66
RNU4-28P-201ENST00000364739 DDX11L8A8MPP1 907 aa10.92□□□□□ -0.66
RNU4-28P-201ENST00000364739 APLP1P51693 650 aa10.92□□□□□ -0.66
RNU4-28P-201ENST00000364739 TPRNQ4KMQ1 711 aa10.91□□□□□ -0.66
RNU4-28P-201ENST00000364739 AK7Q96M32 723 aa10.91□□□□□ -0.66
RNU4-28P-201ENST00000364739 TRIM66O15016 1216 aa10.9□□□□□ -0.66
RNU4-28P-201ENST00000364739 SLC4A3P48751 1232 aa10.9□□□□□ -0.66
RNU4-28P-201ENST00000364739 Q6ZNB5 142 aa10.89□□□□□ -0.67
RNU4-28P-201ENST00000364739 RDH13Q8NBN7 331 aa10.89□□□□□ -0.67
RNU4-28P-201ENST00000364739 CFHP08603 1231 aa10.87□□□□□ -0.67
RNU4-28P-201ENST00000364739 LAPTM4AQ15012 233 aa10.87□□□□□ -0.67
RNU4-28P-201ENST00000364739 PRKCSHP14314 528 aaPredicted RBP10.86□□□□□ -0.67
RNU4-28P-201ENST00000364739 TTLL12Q14166 644 aaPredicted RBP10.86□□□□□ -0.67
RNU4-28P-201ENST00000364739 TMUB1Q9BVT8 246 aa10.85□□□□□ -0.67
RNU4-28P-201ENST00000364739 GPCPD1Q9NPB8 672 aa10.85□□□□□ -0.67
RNU4-28P-201ENST00000364739 CLCN1P35523 988 aa10.84□□□□□ -0.67
RNU4-28P-201ENST00000364739 AMHR2Q16671 573 aa10.84□□□□□ -0.67
RNU4-28P-201ENST00000364739 TJAP1Q5JTD0 557 aa10.83□□□□□ -0.68
RNU4-28P-201ENST00000364739 COPS2P61201 443 aa10.82□□□□□ -0.68
RNU4-28P-201ENST00000364739 PDE4DQ08499 809 aa10.82□□□□□ -0.68
RNU4-28P-201ENST00000364739 SULF1Q8IWU6 871 aa10.82□□□□□ -0.68
RNU4-28P-201ENST00000364739 PARP9Q8IXQ6 854 aa10.82□□□□□ -0.68
RNU4-28P-201ENST00000364739 FAM217BQ9NTX9 383 aaPredicted RBP10.82□□□□□ -0.68
RNU4-28P-201ENST00000364739 SSTR3P32745 418 aaPredicted RBP10.81□□□□□ -0.68
RNU4-28P-201ENST00000364739 RSPH4AQ5TD94 716 aa10.81□□□□□ -0.68
RNU4-28P-201ENST00000364739 MTRQ99707 1265 aa10.81□□□□□ -0.68
RNU4-28P-201ENST00000364739 CD46P15529 392 aa10.8□□□□□ -0.68
RNU4-28P-201ENST00000364739 GCGRP47871 477 aa10.8□□□□□ -0.68
RNU4-28P-201ENST00000364739 PUS10Q3MIT2 529 aaKnown RBP10.8□□□□□ -0.68
RNU4-28P-201ENST00000364739 KMT5BQ4FZB7 885 aa10.8□□□□□ -0.68
RNU4-28P-201ENST00000364739 GIGYF2Q6Y7W6 1299 aaKnown RBP10.8□□□□□ -0.68
RNU4-28P-201ENST00000364739 ZNF516Q92618 1163 aa10.8□□□□□ -0.68
RNU4-28P-201ENST00000364739 NECTIN2Q92692 538 aa10.8□□□□□ -0.68
RNU4-28P-201ENST00000364739 ACTN4O43707 911 aaKnown RBP10.79□□□□□ -0.68
RNU4-28P-201ENST00000364739 BLOC1S3Q6QNY0 202 aa10.79□□□□□ -0.68
RNU4-28P-201ENST00000364739 IL21Q9HBE4 155 aa10.79□□□□□ -0.68
RNU4-28P-201ENST00000364739 PCDHB3Q9Y5E6 796 aa10.79□□□□□ -0.68
RNU4-28P-201ENST00000364739 FUT2Q10981 343 aa10.78□□□□□ -0.68
RNU4-28P-201ENST00000364739 MS4A1P11836 297 aa10.76□□□□□ -0.69
RNU4-28P-201ENST00000364739 NKX2-3Q8TAU0 364 aa10.76□□□□□ -0.69
RNU4-28P-201ENST00000364739 GFRA3O60609 400 aa10.75□□□□□ -0.69
RNU4-28P-201ENST00000364739 PRR14Q9BWN1 585 aa10.75□□□□□ -0.69
RNU4-28P-201ENST00000364739 GPBP1L1Q9HC44 474 aaPredicted RBP10.75□□□□□ -0.69
RNU4-28P-201ENST00000364739 PRKD2Q9BZL6 878 aa10.74□□□□□ -0.69
RNU4-28P-201ENST00000364739 V9GY48 417 aaPredicted RBP10.74□□□□□ -0.69
RNU4-28P-201ENST00000364739 PPP1R18Q6NYC8 613 aa10.73□□□□□ -0.69
RNU4-28P-201ENST00000364739 HLA-CQ95604 372 aa10.73□□□□□ -0.69
RNU4-28P-201ENST00000364739 KDM4AO75164 1064 aa10.72□□□□□ -0.69
RNU4-28P-201ENST00000364739 BEGAINQ9BUH8 593 aa10.72□□□□□ -0.69
RNU4-28P-201ENST00000364739 NRG2O14511 850 aaPredicted RBP10.71□□□□□ -0.69
RNU4-28P-201ENST00000364739 TRAF7Q6Q0C0 670 aa10.71□□□□□ -0.69
RNU4-28P-201ENST00000364739 SCUBE3Q8IX30 993 aa10.71□□□□□ -0.69
RNU4-28P-201ENST00000364739 LCE2BO14633 110 aa10.7□□□□□ -0.7
RNU4-28P-201ENST00000364739 TLL1O43897 1013 aa10.7□□□□□ -0.7
RNU4-28P-201ENST00000364739 ZPR1O75312 459 aa10.7□□□□□ -0.7
RNU4-28P-201ENST00000364739 ATP6V1AP38606 617 aa10.7□□□□□ -0.7
RNU4-28P-201ENST00000364739 MORN1Q5T089 497 aa10.7□□□□□ -0.7
RNU4-28P-201ENST00000364739 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.7□□□□□ -0.7
RNU4-28P-201ENST00000364739 GUCA2AQ02747 115 aa10.69□□□□□ -0.7
RNU4-28P-201ENST00000364739 SLC27A5Q9Y2P5 690 aa10.69□□□□□ -0.7
RNU4-28P-201ENST00000364739 NUTM1Q86Y26 1132 aa10.68□□□□□ -0.7
RNU4-28P-201ENST00000364739 SPIRE2Q8WWL2 714 aa10.68□□□□□ -0.7
RNU4-28P-201ENST00000364739 KDM4CQ9H3R0 1056 aa10.67□□□□□ -0.7
RNU4-28P-201ENST00000364739 NR1I2O75469 434 aa10.66□□□□□ -0.7
RNU4-28P-201ENST00000364739 NDUFV2P19404 249 aa10.65□□□□□ -0.7
RNU4-28P-201ENST00000364739 HOXA2O43364 376 aa10.64□□□□□ -0.71
RNU4-28P-201ENST00000364739 GGCXP38435 758 aa10.64□□□□□ -0.71
RNU4-28P-201ENST00000364739 NEUROD2Q15784 382 aa10.64□□□□□ -0.71
RNU4-28P-201ENST00000364739 MOXD2PA6NHM9 499 aa10.63□□□□□ -0.71
RNU4-28P-201ENST00000364739 GRIPAP1Q4V328 841 aa10.63□□□□□ -0.71
RNU4-28P-201ENST00000364739 RNF19BQ6ZMZ0 732 aa10.63□□□□□ -0.71
RNU4-28P-201ENST00000364739 TBC1D2Q9BYX2 928 aa10.63□□□□□ -0.71
RNU4-28P-201ENST00000364739 FAM117AQ9C073 453 aa10.63□□□□□ -0.71
RNU4-28P-201ENST00000364739 SYMPKQ92797 1274 aaKnown RBP10.62□□□□□ -0.71
RNU4-28P-201ENST00000364739 BRPF1P55201 1214 aaPredicted RBP10.61□□□□□ -0.71
RNU4-28P-201ENST00000364739 USP46P62068 366 aa10.61□□□□□ -0.71
RNU4-28P-201ENST00000364739 THAP11Q96EK4 314 aa10.61□□□□□ -0.71
RNU4-28P-201ENST00000364739 SPSB2Q99619 263 aa10.61□□□□□ -0.71
RNU4-28P-201ENST00000364739 PCDHGC3Q9UN70 934 aa10.6□□□□□ -0.71
RNU4-28P-201ENST00000364739 PPEF1O14829 653 aaPredicted RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms