RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 EIF4G2P78344 907 aaKnown RBP eCLIP18.43■□□□□ 0.54
SQSTM1-201ENST00000360718 ADGRF5Q8IZF2 1346 aa18.42■□□□□ 0.54
SQSTM1-201ENST00000360718 CEBPAP49715 358 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-201ENST00000360718 MYOM2P54296 1465 aa18.42■□□□□ 0.54
SQSTM1-201ENST00000360718 NEXMIFQ5QGS0 1516 aa18.41■□□□□ 0.54
SQSTM1-201ENST00000360718 ROCK2O75116 1388 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-201ENST00000360718 NRXN1Q9ULB1 1477 aa18.39■□□□□ 0.54
SQSTM1-201ENST00000360718 CARD11Q9BXL7 1154 aa18.39■□□□□ 0.53
SQSTM1-201ENST00000360718 USP47Q96K76 1375 aa18.39■□□□□ 0.53
SQSTM1-201ENST00000360718 GPRASP1Q5JY77 1395 aa18.38■□□□□ 0.53
SQSTM1-201ENST00000360718 NUTM2DQ5VT03 806 aaPredicted RBP18.38■□□□□ 0.53
SQSTM1-201ENST00000360718 TNRQ92752 1358 aa18.37■□□□□ 0.53
SQSTM1-201ENST00000360718 ADAMTSL3P82987 1691 aa18.37■□□□□ 0.53
SQSTM1-201ENST00000360718 RIMS1Q86UR5 1692 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-201ENST00000360718 RPGRIP1LQ68CZ1 1315 aa18.36■□□□□ 0.53
SQSTM1-201ENST00000360718 A2ML1A8K2U0 1454 aa18.36■□□□□ 0.53
SQSTM1-201ENST00000360718 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
SQSTM1-201ENST00000360718 LAMC1P11047 1609 aa18.35■□□□□ 0.53
SQSTM1-201ENST00000360718 KIAA1210Q9ULL0 1709 aa18.34■□□□□ 0.53
SQSTM1-201ENST00000360718 PIK3C2GO75747 1445 aa18.34■□□□□ 0.53
SQSTM1-201ENST00000360718 C11orf95C9JLR9 678 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-201ENST00000360718 POLR1AO95602 1720 aaPredicted RBP18.33■□□□□ 0.53
SQSTM1-201ENST00000360718 CFAP70Q5T0N1 1121 aa18.33■□□□□ 0.53
SQSTM1-201ENST00000360718 STAG3Q9UJ98 1225 aa18.31■□□□□ 0.52
SQSTM1-201ENST00000360718 UBR1Q8IWV7 1749 aa18.31■□□□□ 0.52
SQSTM1-201ENST00000360718 WASHC2AQ641Q2 1341 aa18.3■□□□□ 0.52
SQSTM1-201ENST00000360718 IQGAP1P46940 1657 aa18.3■□□□□ 0.52
SQSTM1-201ENST00000360718 ST20-MTHFSA0A0A6YYL1 179 aa18.29■□□□□ 0.52
SQSTM1-201ENST00000360718 SENP3Q9H4L4 574 aaPredicted RBP18.29■□□□□ 0.52
SQSTM1-201ENST00000360718 ZFYVE9O95405 1425 aa18.29■□□□□ 0.52
SQSTM1-201ENST00000360718 VGFO15240 615 aaPredicted RBP18.28■□□□□ 0.52
SQSTM1-201ENST00000360718 KDM5AP29375 1690 aaKnown RBP18.27■□□□□ 0.52
SQSTM1-201ENST00000360718 DDX10Q13206 875 aaKnown RBP18.27■□□□□ 0.52
SQSTM1-201ENST00000360718 C14orf93Q9H972 538 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-201ENST00000360718 NLRP1Q9C000 1473 aa18.26■□□□□ 0.51
SQSTM1-201ENST00000360718 RIMS2Q9UQ26 1411 aa18.26■□□□□ 0.51
SQSTM1-201ENST00000360718 ADGRB1O14514 1584 aa18.26■□□□□ 0.51
SQSTM1-201ENST00000360718 MYO3AQ8NEV4 1616 aa18.25■□□□□ 0.51
SQSTM1-201ENST00000360718 SETBP1Q9Y6X0 1596 aa18.24■□□□□ 0.51
SQSTM1-201ENST00000360718 CCDC7Q96M83 1385 aa18.24■□□□□ 0.51
SQSTM1-201ENST00000360718 SCAF11Q99590 1463 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-201ENST00000360718 KIF7Q2M1P5 1343 aa18.23■□□□□ 0.51
SQSTM1-201ENST00000360718 TMEM132EQ6IEE7 984 aa18.23■□□□□ 0.51
SQSTM1-201ENST00000360718 ASXL1Q8IXJ9 1541 aa18.22■□□□□ 0.51
SQSTM1-201ENST00000360718 TESK2Q96S53 571 aa18.21■□□□□ 0.51
SQSTM1-201ENST00000360718 TMEM2Q9UHN6 1383 aa18.21■□□□□ 0.51
SQSTM1-201ENST00000360718 SUPT16HQ9Y5B9 1047 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-201ENST00000360718 NRXN3Q9Y4C0 1643 aa18.2■□□□□ 0.5
SQSTM1-201ENST00000360718 ALKQ9UM73 1620 aa18.19■□□□□ 0.5
SQSTM1-201ENST00000360718 PTPRMP28827 1452 aa18.18■□□□□ 0.5
SQSTM1-201ENST00000360718 SETD1AO15047 1707 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-201ENST00000360718 CEP170BQ9Y4F5 1589 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-201ENST00000360718 LTKP29376 864 aa18.16■□□□□ 0.5
SQSTM1-201ENST00000360718 DISP3Q9P2K9 1392 aa18.16■□□□□ 0.5
SQSTM1-201ENST00000360718 EIF3AQ14152 1382 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-201ENST00000360718 TRAK1Q9UPV9 953 aa18.15■□□□□ 0.5
SQSTM1-201ENST00000360718 SLIT1O75093 1534 aa18.15■□□□□ 0.5
SQSTM1-201ENST00000360718 ARHGAP23Q9P227 1491 aa18.15■□□□□ 0.5
SQSTM1-201ENST00000360718 SETD1BQ9UPS6 1966 aaKnown RBP18.14■□□□□ 0.5
SQSTM1-201ENST00000360718 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.14■□□□□ 0.49
SQSTM1-201ENST00000360718 ARHGEF28Q8N1W1 1705 aaKnown RBP18.14■□□□□ 0.49
SQSTM1-201ENST00000360718 ZNF142P52746 1687 aaPredicted RBP18.13■□□□□ 0.49
SQSTM1-201ENST00000360718 CCER2I3L3R5 266 aa18.13■□□□□ 0.49
SQSTM1-201ENST00000360718 POLR3GLQ9BT43 218 aa18.13■□□□□ 0.49
SQSTM1-201ENST00000360718 HDGFP51858 240 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-201ENST00000360718 ANP32CO43423 234 aa18.11■□□□□ 0.49
SQSTM1-201ENST00000360718 TXNDC2Q86VQ3 553 aa18.1■□□□□ 0.49
SQSTM1-201ENST00000360718 THEMISQ8N1K5 641 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-201ENST00000360718 YTHDC2Q9H6S0 1430 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-201ENST00000360718 STK26Q9P289 416 aa18.1■□□□□ 0.49
SQSTM1-201ENST00000360718 QRICH2Q9H0J4 1663 aa18.1■□□□□ 0.49
SQSTM1-201ENST00000360718 ADAMTS13Q76LX8 1427 aa18.09■□□□□ 0.49
SQSTM1-201ENST00000360718 METP08581 1390 aa18.09■□□□□ 0.49
SQSTM1-201ENST00000360718 PLEKHG1Q9ULL1 1385 aa18.08■□□□□ 0.48
SQSTM1-201ENST00000360718 CENPJQ9HC77 1338 aaPredicted RBP18.08■□□□□ 0.48
SQSTM1-201ENST00000360718 SLC24A1O60721 1099 aa18.07■□□□□ 0.48
SQSTM1-201ENST00000360718 TMF1P82094 1093 aa18.07■□□□□ 0.48
SQSTM1-201ENST00000360718 KDM4FA0A1W2PPD8 638 aa18.07■□□□□ 0.48
SQSTM1-201ENST00000360718 EID1Q9Y6B2 187 aa18.05■□□□□ 0.48
SQSTM1-201ENST00000360718 SBNO2Q9Y2G9 1366 aa18.05■□□□□ 0.48
SQSTM1-201ENST00000360718 BCANQ96GW7 911 aa18.05■□□□□ 0.48
SQSTM1-201ENST00000360718 MED14O60244 1454 aa18.05■□□□□ 0.48
SQSTM1-201ENST00000360718 CDCA8Q53HL2 280 aa18.03■□□□□ 0.48
SQSTM1-201ENST00000360718 SLC26A8Q96RN1 970 aa18.03■□□□□ 0.48
SQSTM1-201ENST00000360718 LRPPRCP42704 1394 aaKnown RBP18.03■□□□□ 0.48
SQSTM1-201ENST00000360718 SAFB2Q14151 953 aaKnown RBP eCLIP18.02■□□□□ 0.48
SQSTM1-201ENST00000360718 PRAM1Q96QH2 718 aa18.01■□□□□ 0.47
SQSTM1-201ENST00000360718 MYOM1P52179 1685 aa18.01■□□□□ 0.47
SQSTM1-201ENST00000360718 DLC1Q96QB1 1528 aa18■□□□□ 0.47
SQSTM1-201ENST00000360718 TULP4Q9NRJ4 1543 aa18■□□□□ 0.47
SQSTM1-201ENST00000360718 ABCC11Q96J66 1382 aa18■□□□□ 0.47
SQSTM1-201ENST00000360718 PLEKHH1Q9ULM0 1364 aa18■□□□□ 0.47
SQSTM1-201ENST00000360718 KNDC1Q76NI1 1749 aa17.99■□□□□ 0.47
SQSTM1-201ENST00000360718 PTPRUQ92729 1446 aa17.99■□□□□ 0.47
SQSTM1-201ENST00000360718 WAPLQ7Z5K2 1190 aa17.98■□□□□ 0.47
SQSTM1-201ENST00000360718 TECPR2O15040 1411 aa17.97■□□□□ 0.47
SQSTM1-201ENST00000360718 ANKLE2Q86XL3 938 aa17.96■□□□□ 0.47
SQSTM1-201ENST00000360718 NEFLP07196 543 aa17.96■□□□□ 0.47
SQSTM1-201ENST00000360718 POGKQ9P215 609 aa17.96■□□□□ 0.47
SQSTM1-201ENST00000360718 CPS1P31327 1500 aa17.96■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms