RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 NRXN1Q9ULB1 1477 aa28.24■■■□□ 2.11
CLN3-205ENST00000359984 VGFO15240 615 aaPredicted RBP28.23■■■□□ 2.11
CLN3-205ENST00000359984 NUTM2DQ5VT03 806 aaPredicted RBP28.23■■■□□ 2.11
CLN3-205ENST00000359984 TRPM1Q7Z4N2 1603 aa28.22■■■□□ 2.11
CLN3-205ENST00000359984 KDM5AP29375 1690 aaKnown RBP28.22■■■□□ 2.11
CLN3-205ENST00000359984 ZNF316A6NFI3 1004 aaPredicted RBP28.21■■■□□ 2.11
CLN3-205ENST00000359984 UBR1Q8IWV7 1749 aa28.21■■■□□ 2.11
CLN3-205ENST00000359984 NBPF1Q3BBV0 1214 aa28.2■■■□□ 2.1
CLN3-205ENST00000359984 MYO3AQ8NEV4 1616 aa28.2■■■□□ 2.1
CLN3-205ENST00000359984 ZFYVE9O95405 1425 aa28.19■■■□□ 2.1
CLN3-205ENST00000359984 ROCK2O75116 1388 aaKnown RBP28.19■■■□□ 2.1
CLN3-205ENST00000359984 RIMS2Q9UQ26 1411 aa28.18■■■□□ 2.1
CLN3-205ENST00000359984 KDM4FA0A1W2PPD8 638 aa28.18■■■□□ 2.1
CLN3-205ENST00000359984 PIK3C2GO75747 1445 aa28.16■■■□□ 2.1
CLN3-205ENST00000359984 CARD11Q9BXL7 1154 aa28.16■■■□□ 2.1
CLN3-205ENST00000359984 GPRASP1Q5JY77 1395 aa28.15■■■□□ 2.1
CLN3-205ENST00000359984 TMEM2Q9UHN6 1383 aa28.15■■■□□ 2.1
CLN3-205ENST00000359984 CFAP70Q5T0N1 1121 aa28.15■■■□□ 2.1
CLN3-205ENST00000359984 EIF4G2P78344 907 aaKnown RBP eCLIP28.14■■■□□ 2.11e-9■■■■□ 22.4
CLN3-205ENST00000359984 SETD1BQ9UPS6 1966 aaKnown RBP28.13■■■□□ 2.09
CLN3-205ENST00000359984 HSPA5P11021 654 aaKnown RBP28.12■■■□□ 2.09
CLN3-205ENST00000359984 HIRIP3Q9BW71 556 aaPredicted RBP28.12■■■□□ 2.09
CLN3-205ENST00000359984 CEP170BQ9Y4F5 1589 aaPredicted RBP28.12■■■□□ 2.09
CLN3-205ENST00000359984 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.12■■■□□ 2.09
CLN3-205ENST00000359984 THEMISQ8N1K5 641 aaPredicted RBP28.11■■■□□ 2.09
CLN3-205ENST00000359984 KIAA1210Q9ULL0 1709 aa28.11■■■□□ 2.09
CLN3-205ENST00000359984 C14orf93Q9H972 538 aaKnown RBP28.1■■■□□ 2.09
CLN3-205ENST00000359984 HDGFP51858 240 aaKnown RBP28.1■■■□□ 2.09
CLN3-205ENST00000359984 USP47Q96K76 1375 aa28.08■■■□□ 2.09
CLN3-205ENST00000359984 LAMC1P11047 1609 aa28.06■■■□□ 2.08
CLN3-205ENST00000359984 SENP3Q9H4L4 574 aaPredicted RBP28.06■■■□□ 2.08
CLN3-205ENST00000359984 SLIT1O75093 1534 aa28.06■■■□□ 2.08
CLN3-205ENST00000359984 ARHGAP23Q9P227 1491 aa28.06■■■□□ 2.08
CLN3-205ENST00000359984 ZNF142P52746 1687 aaPredicted RBP28.05■■■□□ 2.08
CLN3-205ENST00000359984 LTKP29376 864 aa28.04■■■□□ 2.08
CLN3-205ENST00000359984 TXNDC2Q86VQ3 553 aa28.02■■■□□ 2.08
CLN3-205ENST00000359984 EID1Q9Y6B2 187 aa28.02■■■□□ 2.08
CLN3-205ENST00000359984 SETBP1Q9Y6X0 1596 aa28.01■■■□□ 2.07
CLN3-205ENST00000359984 TMEM132EQ6IEE7 984 aa27.99■■■□□ 2.07
CLN3-205ENST00000359984 ADGRB1O14514 1584 aa27.99■■■□□ 2.07
CLN3-205ENST00000359984 ALKQ9UM73 1620 aa27.98■■■□□ 2.07
CLN3-205ENST00000359984 SCAF11Q99590 1463 aaKnown RBP27.97■■■□□ 2.07
CLN3-205ENST00000359984 ST20-MTHFSA0A0A6YYL1 179 aa27.97■■■□□ 2.07
CLN3-205ENST00000359984 PLEKHG1Q9ULL1 1385 aa27.96■■■□□ 2.07
CLN3-205ENST00000359984 IQGAP1P46940 1657 aa27.95■■■□□ 2.07
CLN3-205ENST00000359984 NRXN3Q9Y4C0 1643 aa27.95■■■□□ 2.06
CLN3-205ENST00000359984 ASXL1Q8IXJ9 1541 aa27.93■■■□□ 2.06
CLN3-205ENST00000359984 BCANQ96GW7 911 aa27.92■■■□□ 2.06
CLN3-205ENST00000359984 ANKLE2Q86XL3 938 aa27.9■■■□□ 2.06
CLN3-205ENST00000359984 SETD1AO15047 1707 aaKnown RBP27.88■■■□□ 2.05
CLN3-205ENST00000359984 ADAMTS13Q76LX8 1427 aa27.88■■■□□ 2.05
CLN3-205ENST00000359984 TRAK1Q9UPV9 953 aa27.88■■■□□ 2.05
CLN3-205ENST00000359984 C11orf95C9JLR9 678 aaPredicted RBP27.87■■■□□ 2.05
CLN3-205ENST00000359984 EIF3AQ14152 1382 aaKnown RBP27.86■■■□□ 2.05
CLN3-205ENST00000359984 METP08581 1390 aa27.85■■■□□ 2.05
CLN3-205ENST00000359984 TESK2Q96S53 571 aa27.85■■■□□ 2.05
CLN3-205ENST00000359984 YTHDC2Q9H6S0 1430 aaKnown RBP27.84■■■□□ 2.05
CLN3-205ENST00000359984 STK26Q9P289 416 aa27.84■■■□□ 2.05
CLN3-205ENST00000359984 MED14O60244 1454 aa27.84■■■□□ 2.05
CLN3-205ENST00000359984 SLC26A8Q96RN1 970 aa27.83■■■□□ 2.05
CLN3-205ENST00000359984 WASHC2AQ641Q2 1341 aa27.82■■■□□ 2.04
CLN3-205ENST00000359984 TBX22Q9Y458 520 aa27.81■■■□□ 2.04
CLN3-205ENST00000359984 LRPPRCP42704 1394 aaKnown RBP27.8■■■□□ 2.04
CLN3-205ENST00000359984 CCDC7Q96M83 1385 aa27.79■■■□□ 2.04
CLN3-205ENST00000359984 KIF7Q2M1P5 1343 aa27.78■■■□□ 2.04
CLN3-205ENST00000359984 CENPJQ9HC77 1338 aaPredicted RBP27.78■■■□□ 2.04
CLN3-205ENST00000359984 NCKAP5LQ9HCH0 1330 aa27.78■■■□□ 2.04
CLN3-205ENST00000359984 LMTK3Q96Q04 1460 aa27.77■■■□□ 2.04
CLN3-205ENST00000359984 ABCC11Q96J66 1382 aa27.76■■■□□ 2.03
CLN3-205ENST00000359984 ARHGEF28Q8N1W1 1705 aaKnown RBP27.76■■■□□ 2.03
CLN3-205ENST00000359984 DIP2AQ14689 1571 aa27.76■■■□□ 2.03
CLN3-205ENST00000359984 HSPA2P54652 639 aa27.75■■■□□ 2.03
CLN3-205ENST00000359984 NPHP4O75161 1426 aaPredicted RBP27.74■■■□□ 2.03
CLN3-205ENST00000359984 DIEXFQ68CQ4 756 aaKnown RBP27.74■■■□□ 2.03
CLN3-205ENST00000359984 DDX10Q13206 875 aaKnown RBP27.73■■■□□ 2.03
CLN3-205ENST00000359984 POLR1AO95602 1720 aaPredicted RBP27.73■■■□□ 2.03
CLN3-205ENST00000359984 DISP3Q9P2K9 1392 aa27.73■■■□□ 2.03
CLN3-205ENST00000359984 TMF1P82094 1093 aa27.72■■■□□ 2.03
CLN3-205ENST00000359984 DLC1Q96QB1 1528 aa27.72■■■□□ 2.03
CLN3-205ENST00000359984 SBNO2Q9Y2G9 1366 aa27.71■■■□□ 2.03
CLN3-205ENST00000359984 PRAM1Q96QH2 718 aa27.7■■■□□ 2.03
CLN3-205ENST00000359984 PTPRUQ92729 1446 aa27.7■■■□□ 2.03
CLN3-205ENST00000359984 TECPR2O15040 1411 aa27.69■■■□□ 2.02
CLN3-205ENST00000359984 SLC24A1O60721 1099 aa27.68■■■□□ 2.02
CLN3-205ENST00000359984 POLR3GLQ9BT43 218 aa27.68■■■□□ 2.02
CLN3-205ENST00000359984 POGKQ9P215 609 aa27.68■■■□□ 2.02
CLN3-205ENST00000359984 QRICH2Q9H0J4 1663 aa27.68■■■□□ 2.02
CLN3-205ENST00000359984 SAFB2Q14151 953 aaKnown RBP eCLIP27.67■■■□□ 2.02
CLN3-205ENST00000359984 SIRT1Q96EB6 747 aa27.67■■■□□ 2.02
CLN3-205ENST00000359984 PIK3R4Q99570 1358 aa27.66■■■□□ 2.02
CLN3-205ENST00000359984 KNDC1Q76NI1 1749 aa27.66■■■□□ 2.02
CLN3-205ENST00000359984 WAPLQ7Z5K2 1190 aa27.66■■■□□ 2.02
CLN3-205ENST00000359984 AMOTL2Q9Y2J4 779 aa27.66■■■□□ 2.02
CLN3-205ENST00000359984 PLEKHH1Q9ULM0 1364 aa27.64■■■□□ 2.02
CLN3-205ENST00000359984 CPS1P31327 1500 aa27.64■■■□□ 2.02
CLN3-205ENST00000359984 FAM135BQ49AJ0 1406 aa27.63■■■□□ 2.01
CLN3-205ENST00000359984 ROBO2Q9HCK4 1378 aa27.62■■■□□ 2.01
CLN3-205ENST00000359984 CDCA8Q53HL2 280 aa27.61■■■□□ 2.01
CLN3-205ENST00000359984 MINK1Q8N4C8 1332 aaPredicted RBP27.59■■■□□ 2.01
CLN3-205ENST00000359984 XRN1Q8IZH2 1706 aaKnown RBP27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms