RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 H0YHG0 523 aa7.38□□□□□ -1.23
VPS13B-203ENST00000358544 PANK3Q9H999 370 aa7.38□□□□□ -1.23
VPS13B-203ENST00000358544 CCDC88BA6NC98 1476 aa7.38□□□□□ -1.23
VPS13B-203ENST00000358544 RABEP1Q15276 862 aa7.38□□□□□ -1.23
VPS13B-203ENST00000358544 IRX3P78415 501 aaPredicted RBP7.37□□□□□ -1.23
VPS13B-203ENST00000358544 PANK1Q8TE04 598 aa7.37□□□□□ -1.23
VPS13B-203ENST00000358544 TPD52L1Q16890 204 aaPredicted RBP7.37□□□□□ -1.23
VPS13B-203ENST00000358544 MYO9BQ13459 2157 aa7.37□□□□□ -1.23
VPS13B-203ENST00000358544 TRIM6-TRIM34B2RNG4 842 aa7.37□□□□□ -1.23
VPS13B-203ENST00000358544 CEP290O15078 2479 aa7.37□□□□□ -1.23
VPS13B-203ENST00000358544 DZIP1LQ8IYY4 767 aaKnown RBP7.37□□□□□ -1.23
VPS13B-203ENST00000358544 ZNF318Q5VUA4 2279 aa7.37□□□□□ -1.23
VPS13B-203ENST00000358544 PPP4R3BQ5MIZ7 849 aa7.37□□□□□ -1.23
VPS13B-203ENST00000358544 TRIM5Q9C035 493 aa7.37□□□□□ -1.23
VPS13B-203ENST00000358544 SMAP1Q8IYB5 467 aaPredicted RBP7.37□□□□□ -1.23
VPS13B-203ENST00000358544 LETM1O95202 739 aaPredicted RBP7.36□□□□□ -1.23
VPS13B-203ENST00000358544 CBX1P83916 185 aa7.36□□□□□ -1.23
VPS13B-203ENST00000358544 CCDC34Q96HJ3 373 aa7.36□□□□□ -1.23
VPS13B-203ENST00000358544 ANKRD45Q5TZF3 282 aa7.36□□□□□ -1.23
VPS13B-203ENST00000358544 RNF20Q5VTR2 975 aa7.36□□□□□ -1.23
VPS13B-203ENST00000358544 RRP7AQ9Y3A4 280 aaKnown RBP7.36□□□□□ -1.23
VPS13B-203ENST00000358544 CCDC94Q9BW85 323 aaPredicted RBP7.36□□□□□ -1.23
VPS13B-203ENST00000358544 MPNDQ8N594 471 aa7.36□□□□□ -1.23
VPS13B-203ENST00000358544 PDZRN3Q9UPQ7 1066 aa7.36□□□□□ -1.23
VPS13B-203ENST00000358544 DDX19BQ9UMR2 479 aa7.35□□□□□ -1.23
VPS13B-203ENST00000358544 H3BQV1 296 aa7.35□□□□□ -1.23
VPS13B-203ENST00000358544 IFFO2Q5TF58 517 aa7.35□□□□□ -1.23
VPS13B-203ENST00000358544 GORABQ5T7V8 394 aa7.35□□□□□ -1.23
VPS13B-203ENST00000358544 BICD2Q8TD16 824 aa7.35□□□□□ -1.23
VPS13B-203ENST00000358544 BCL11BQ9C0K0 894 aaPredicted RBP7.35□□□□□ -1.23
VPS13B-203ENST00000358544 XRCC6P12956 609 aaKnown RBP eCLIP7.35□□□□□ -1.239e-6■■■□□ 15.7
VPS13B-203ENST00000358544 HSP90AB3PQ58FF7 597 aa7.35□□□□□ -1.23
VPS13B-203ENST00000358544 CHMP3Q9Y3E7 222 aa7.35□□□□□ -1.23
VPS13B-203ENST00000358544 PRPF40AO75400 957 aaKnown RBP7.34□□□□□ -1.23
VPS13B-203ENST00000358544 PLEKHD1A6NEE1 506 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 CARMIL1Q5VZK9 1371 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 NGEFQ8N5V2 710 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 CCDC73Q6ZRK6 1079 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 BCL2L13Q9BXK5 485 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 CHMP4AQ9BY43 222 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 TIGD1Q96MW7 591 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 SENP3Q9H4L4 574 aaPredicted RBP7.34□□□□□ -1.23
VPS13B-203ENST00000358544 WASHC2CQ9Y4E1 1318 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 TPM1P09493 284 aa7.34□□□□□ -1.23
VPS13B-203ENST00000358544 KIAA0754O94854 1291 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 ERCC4Q92889 916 aaPredicted RBP7.33□□□□□ -1.24
VPS13B-203ENST00000358544 ABCC8Q09428 1581 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 OFD1O75665 1012 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 USP8P40818 1118 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 TAF7LQ5H9L4 462 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 TRERF1Q96PN7 1200 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 NINLQ9Y2I6 1382 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 ST20-MTHFSA0A0A6YYL1 179 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 NPHP1O15259 732 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 FAM184AQ8NB25 1140 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 TPRP12270 2363 aaKnown RBP7.33□□□□□ -1.24
VPS13B-203ENST00000358544 ANO2Q9NQ90 1003 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 CCDC18Q5T9S5 1454 aa7.33□□□□□ -1.24
VPS13B-203ENST00000358544 VPS37CA5D8V6 355 aaPredicted RBP7.33□□□□□ -1.24
VPS13B-203ENST00000358544 INTS3Q68E01 1043 aaKnown RBP7.33□□□□□ -1.24
VPS13B-203ENST00000358544 SF3A1Q15459 793 aaKnown RBP7.33□□□□□ -1.24
VPS13B-203ENST00000358544 APAF1O14727 1248 aa7.32□□□□□ -1.24
VPS13B-203ENST00000358544 CCDC191Q8NCU4 936 aa7.32□□□□□ -1.24
VPS13B-203ENST00000358544 FBXW7Q969H0 707 aa7.32□□□□□ -1.24
VPS13B-203ENST00000358544 PRIMPOLQ96LW4 560 aa7.32□□□□□ -1.24
VPS13B-203ENST00000358544 DNAJC2Q99543 621 aaKnown RBP7.32□□□□□ -1.24
VPS13B-203ENST00000358544 NBPF1Q3BBV0 1214 aa7.32□□□□□ -1.24
VPS13B-203ENST00000358544 CWC22Q9HCG8 908 aaKnown RBP7.32□□□□□ -1.24
VPS13B-203ENST00000358544 DCTN1Q14203 1278 aa7.32□□□□□ -1.24
VPS13B-203ENST00000358544 SPC24Q8NBT2 197 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 GIMAP7Q8NHV1 300 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 SMC2O95347 1197 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 PAXIP1Q6ZW49 1069 aaPredicted RBP7.31□□□□□ -1.24
VPS13B-203ENST00000358544 CDCA7LQ96GN5 454 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 RUFY1Q96T51 708 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 ESF1Q9H501 851 aaKnown RBP7.31□□□□□ -1.24
VPS13B-203ENST00000358544 UACAQ9BZF9 1416 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 ANKRD12Q6UB98 2062 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 STK31Q9BXU1 1019 aa7.31□□□□□ -1.24
VPS13B-203ENST00000358544 GTF2F1P35269 517 aaKnown RBP eCLIP7.31□□□□□ -1.242e-7■■■■■ 26.9
VPS13B-203ENST00000358544 LMOD3Q0VAK6 560 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 KIF2AO00139 706 aaPredicted RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 CCDC192P0DO97 292 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 CDR1P51861 262 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 K7ELQ4 463 aaPredicted RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 NOL10Q9BSC4 688 aaKnown RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 SMC3Q9UQE7 1217 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 TULP1O00294 542 aaPredicted RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 ERLIN1O75477 346 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 GTF2A1P52655 376 aaPredicted RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 ANKRD30AQ9BXX3 1397 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 DHX8Q14562 1220 aaKnown RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 TBC1D2Q9BYX2 928 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 TSR1Q2NL82 804 aaKnown RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 KRT222Q8N1A0 295 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 CREBRFQ8IUR6 639 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 CHMP4CQ96CF2 233 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 PDE3AQ14432 1141 aa7.3□□□□□ -1.24
VPS13B-203ENST00000358544 RRAGDQ9NQL2 400 aaPredicted RBP7.3□□□□□ -1.24
VPS13B-203ENST00000358544 IPO7O95373 1038 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms