RNA–Protein interactions for RNA: ENST00000358392.6

COL11A1-202, Transcript of collagen type XI alpha 1 chain, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene COL11A1, Length 7,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-202ENST00000358392 CAGE1Q8TC20 777 aa13.63□□□□□ -0.23
COL11A1-202ENST00000358392 ARHGAP35Q9NRY4 1499 aa13.62□□□□□ -0.23
COL11A1-202ENST00000358392 H0YHG0 523 aa13.62□□□□□ -0.23
COL11A1-202ENST00000358392 MPHOSPH9Q99550 1183 aa13.62□□□□□ -0.23
COL11A1-202ENST00000358392 EIF3AQ14152 1382 aaKnown RBP13.62□□□□□ -0.23
COL11A1-202ENST00000358392 TERF2IPQ9NYB0 399 aa13.62□□□□□ -0.23
COL11A1-202ENST00000358392 LMOD3Q0VAK6 560 aa13.62□□□□□ -0.23
COL11A1-202ENST00000358392 MTMR7Q9Y216 660 aa13.61□□□□□ -0.23
COL11A1-202ENST00000358392 NOL10Q9BSC4 688 aaKnown RBP13.61□□□□□ -0.23
COL11A1-202ENST00000358392 FYB1O15117 783 aa13.61□□□□□ -0.23
COL11A1-202ENST00000358392 AMOTL1Q8IY63 956 aa13.61□□□□□ -0.23
COL11A1-202ENST00000358392 HOOK1Q9UJC3 728 aaKnown RBP13.6□□□□□ -0.23
COL11A1-202ENST00000358392 CCDC43Q96MW1 224 aaKnown RBP13.6□□□□□ -0.23
COL11A1-202ENST00000358392 ARGLU1Q9NWB6 273 aaPredicted RBP13.6□□□□□ -0.23
COL11A1-202ENST00000358392 CHMP4AQ9BY43 222 aa13.6□□□□□ -0.23
COL11A1-202ENST00000358392 HSP90B2PQ58FF3 399 aa13.6□□□□□ -0.23
COL11A1-202ENST00000358392 RBM10P98175 930 aaKnown RBP13.59□□□□□ -0.23
COL11A1-202ENST00000358392 C9orf78Q9NZ63 289 aaPredicted RBP13.59□□□□□ -0.23
COL11A1-202ENST00000358392 NUP155O75694 1391 aa13.59□□□□□ -0.23
COL11A1-202ENST00000358392 EPS15P42566 896 aa13.59□□□□□ -0.23
COL11A1-202ENST00000358392 ERCC6Q03468 1493 aa13.59□□□□□ -0.23
COL11A1-202ENST00000358392 TRAK1Q9UPV9 953 aa13.59□□□□□ -0.23
COL11A1-202ENST00000358392 RRP1P56182 461 aaKnown RBP13.59□□□□□ -0.23
COL11A1-202ENST00000358392 VPS37DQ86XT2 251 aa13.59□□□□□ -0.23
COL11A1-202ENST00000358392 RNF214Q8ND24 703 aa13.59□□□□□ -0.23
COL11A1-202ENST00000358392 IFIT2P09913 472 aaKnown RBP13.58□□□□□ -0.23
COL11A1-202ENST00000358392 CDR1P51861 262 aa13.58□□□□□ -0.23
COL11A1-202ENST00000358392 HSP90AB3PQ58FF7 597 aa13.58□□□□□ -0.23
COL11A1-202ENST00000358392 C1orf141Q5JVX7 400 aa13.58□□□□□ -0.23
COL11A1-202ENST00000358392 CPLX2Q6PUV4 134 aaKnown RBP13.58□□□□□ -0.24
COL11A1-202ENST00000358392 ZKSCAN1P17029 563 aaPredicted RBP13.58□□□□□ -0.24
COL11A1-202ENST00000358392 RDXP35241 583 aaKnown RBP13.58□□□□□ -0.24
COL11A1-202ENST00000358392 SMC3Q9UQE7 1217 aa13.58□□□□□ -0.24
COL11A1-202ENST00000358392 ZKSCAN2Q63HK3 967 aa13.58□□□□□ -0.24
COL11A1-202ENST00000358392 CCDC191Q8NCU4 936 aa13.58□□□□□ -0.24
COL11A1-202ENST00000358392 ACBD3Q9H3P7 528 aa13.58□□□□□ -0.24
COL11A1-202ENST00000358392 RAB3GAP2Q9H2M9 1393 aa13.57□□□□□ -0.24
COL11A1-202ENST00000358392 CCDC27Q2M243 656 aa13.57□□□□□ -0.24
COL11A1-202ENST00000358392 RUFY2Q8WXA3 655 aa13.57□□□□□ -0.24
COL11A1-202ENST00000358392 NLRP13Q86W25 1043 aa13.56□□□□□ -0.24
COL11A1-202ENST00000358392 ERICH2A1L162 156 aa13.56□□□□□ -0.24
COL11A1-202ENST00000358392 CWC22Q9HCG8 908 aaKnown RBP13.56□□□□□ -0.24
COL11A1-202ENST00000358392 TRDNQ13061 729 aa13.56□□□□□ -0.24
COL11A1-202ENST00000358392 PANK3Q9H999 370 aa13.55□□□□□ -0.24
COL11A1-202ENST00000358392 EVA1CP58658 441 aa13.55□□□□□ -0.24
COL11A1-202ENST00000358392 FHAD1B1AJZ9 1412 aa13.55□□□□□ -0.24
COL11A1-202ENST00000358392 KANK4Q5T7N3 995 aaPredicted RBP13.55□□□□□ -0.24
COL11A1-202ENST00000358392 CGNL1Q0VF96 1302 aa13.55□□□□□ -0.24
COL11A1-202ENST00000358392 SYTL4Q96C24 671 aaPredicted RBP13.55□□□□□ -0.24
COL11A1-202ENST00000358392 REC8O95072 547 aa13.55□□□□□ -0.24
COL11A1-202ENST00000358392 MAPK8IP2Q13387 824 aaPredicted RBP13.55□□□□□ -0.24
COL11A1-202ENST00000358392 CHMP5Q9NZZ3 219 aa13.54□□□□□ -0.24
COL11A1-202ENST00000358392 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL11A1-202ENST00000358392 TSPYL1Q9H0U9 437 aa13.54□□□□□ -0.24
COL11A1-202ENST00000358392 BRPF1P55201 1214 aaPredicted RBP13.54□□□□□ -0.24
COL11A1-202ENST00000358392 PDE3BQ13370 1112 aa13.54□□□□□ -0.24
COL11A1-202ENST00000358392 OLFM4Q6UX06 510 aa13.54□□□□□ -0.24
COL11A1-202ENST00000358392 NASPP49321 788 aaPredicted RBP13.53□□□□□ -0.24
COL11A1-202ENST00000358392 CCDC73Q6ZRK6 1079 aa13.53□□□□□ -0.24
COL11A1-202ENST00000358392 CHMP4CQ96CF2 233 aa13.53□□□□□ -0.24
COL11A1-202ENST00000358392 KIF15Q9NS87 1388 aa13.53□□□□□ -0.24
COL11A1-202ENST00000358392 OFD1O75665 1012 aa13.53□□□□□ -0.24
COL11A1-202ENST00000358392 SMC2O95347 1197 aa13.53□□□□□ -0.24
COL11A1-202ENST00000358392 SPC24Q8NBT2 197 aa13.52□□□□□ -0.24
COL11A1-202ENST00000358392 CWC15Q9P013 229 aaKnown RBP13.52□□□□□ -0.24
COL11A1-202ENST00000358392 MYBBP1AQ9BQG0 1328 aaKnown RBP13.52□□□□□ -0.24
COL11A1-202ENST00000358392 NEXNQ0ZGT2 675 aa13.52□□□□□ -0.25
COL11A1-202ENST00000358392 DCTN1Q14203 1278 aa13.52□□□□□ -0.25
COL11A1-202ENST00000358392 L3MBTL2Q969R5 705 aa13.52□□□□□ -0.25
COL11A1-202ENST00000358392 AXDND1Q5T1B0 1012 aaPredicted RBP13.52□□□□□ -0.25
COL11A1-202ENST00000358392 LRRFIP1Q32MZ4 808 aaKnown RBP13.51□□□□□ -0.25
COL11A1-202ENST00000358392 CCDC39Q9UFE4 941 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 TTC5Q8N0Z6 440 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 KLHL34Q8N239 644 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 KIF3BO15066 747 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 LNPKQ9C0E8 428 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 HNRNPMP52272 730 aaKnown RBP eCLIP13.51□□□□□ -0.25
COL11A1-202ENST00000358392 TEFQ10587 303 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 MPNDQ8N594 471 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 FMNL2Q96PY5 1086 aa13.51□□□□□ -0.25
COL11A1-202ENST00000358392 CCDC173Q0VFZ6 552 aa13.5□□□□□ -0.25
COL11A1-202ENST00000358392 RNF20Q5VTR2 975 aa13.5□□□□□ -0.25
COL11A1-202ENST00000358392 ANKRD62A6NC57 917 aa13.5□□□□□ -0.25
COL11A1-202ENST00000358392 E9PSI1 815 aa13.5□□□□□ -0.25
COL11A1-202ENST00000358392 NEFHP12036 1026 aa13.5□□□□□ -0.25
COL11A1-202ENST00000358392 SAFBQ15424 915 aaKnown RBP eCLIP13.5□□□□□ -0.25
COL11A1-202ENST00000358392 CAVIN1Q6NZI2 390 aaKnown RBP13.49□□□□□ -0.25
COL11A1-202ENST00000358392 NFKBIBQ15653 356 aa13.49□□□□□ -0.25
COL11A1-202ENST00000358392 TRIM5Q9C035 493 aa13.49□□□□□ -0.25
COL11A1-202ENST00000358392 CEBPZQ03701 1054 aaKnown RBP13.49□□□□□ -0.25
COL11A1-202ENST00000358392 G3BP1Q13283 466 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL11A1-202ENST00000358392 EID1Q9Y6B2 187 aa13.49□□□□□ -0.25
COL11A1-202ENST00000358392 WASHC4Q2M389 1173 aa13.49□□□□□ -0.25
COL11A1-202ENST00000358392 INTS3Q68E01 1043 aaKnown RBP13.49□□□□□ -0.25
COL11A1-202ENST00000358392 STK11IPQ8N1F8 1099 aa13.48□□□□□ -0.25
COL11A1-202ENST00000358392 NEUROD6Q96NK8 337 aa13.48□□□□□ -0.25
COL11A1-202ENST00000358392 APAF1O14727 1248 aa13.48□□□□□ -0.25
COL11A1-202ENST00000358392 ATP2B1P20020 1258 aa13.48□□□□□ -0.25
COL11A1-202ENST00000358392 COG3Q96JB2 828 aa13.48□□□□□ -0.25
COL11A1-202ENST00000358392 TMEM132AQ24JP5 1023 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms