RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 NWD1Q149M9 1564 aa17.64■□□□□ 0.41
RTN3-204ENST00000354497 C14orf37Q86TY3 774 aa17.63■□□□□ 0.41
RTN3-204ENST00000354497 ADGRB3O60242 1522 aa17.62■□□□□ 0.41
RTN3-204ENST00000354497 VPS8Q8N3P4 1428 aa17.62■□□□□ 0.41
RTN3-204ENST00000354497 CROCC2H7BZ55 1655 aa17.62■□□□□ 0.41
RTN3-204ENST00000354497 UPF1Q92900 1129 aaKnown RBP eCLIP17.62■□□□□ 0.411e-25■■■■□ 25.8
RTN3-204ENST00000354497 KDM5AP29375 1690 aaKnown RBP17.61■□□□□ 0.41
RTN3-204ENST00000354497 ABCC5O15440 1437 aa17.61■□□□□ 0.41
RTN3-204ENST00000354497 PPP1R15AO75807 674 aaPredicted RBP17.61■□□□□ 0.41
RTN3-204ENST00000354497 ZNF772Q68DY9 489 aaPredicted RBP17.61■□□□□ 0.41
RTN3-204ENST00000354497 LRP6O75581 1613 aa17.61■□□□□ 0.41
RTN3-204ENST00000354497 CHIC2Q9UKJ5 165 aa17.6■□□□□ 0.41
RTN3-204ENST00000354497 COL16A1Q07092 1604 aaPredicted RBP17.59■□□□□ 0.41
RTN3-204ENST00000354497 NCBP3Q53F19 620 aaKnown RBP17.58■□□□□ 0.41
RTN3-204ENST00000354497 SPATA31A6Q5VVP1 1343 aa17.58■□□□□ 0.4
RTN3-204ENST00000354497 LMTK2Q8IWU2 1503 aa17.58■□□□□ 0.4
RTN3-204ENST00000354497 PELP1Q8IZL8 1130 aaKnown RBP17.57■□□□□ 0.4
RTN3-204ENST00000354497 DAPK1P53355 1430 aa17.57■□□□□ 0.4
RTN3-204ENST00000354497 PTPN23Q9H3S7 1636 aa17.56■□□□□ 0.4
RTN3-204ENST00000354497 NOS1P29475 1434 aa17.56■□□□□ 0.4
RTN3-204ENST00000354497 ANKRD30AQ9BXX3 1397 aa17.55■□□□□ 0.4
RTN3-204ENST00000354497 NUTM2BA6NNL0 878 aaPredicted RBP17.55■□□□□ 0.4
RTN3-204ENST00000354497 NUTM2EB1AL46 878 aaPredicted RBP17.55■□□□□ 0.4
RTN3-204ENST00000354497 RXRBP28702 533 aa17.55■□□□□ 0.4
RTN3-204ENST00000354497 NUTM2AQ8IVF1 878 aaPredicted RBP17.55■□□□□ 0.4
RTN3-204ENST00000354497 SLC52A1Q9NWF4 448 aa17.55■□□□□ 0.4
RTN3-204ENST00000354497 FGD6Q6ZV73 1430 aa17.54■□□□□ 0.4
RTN3-204ENST00000354497 PLEKHG1Q9ULL1 1385 aa17.54■□□□□ 0.4
RTN3-204ENST00000354497 RIMS2Q9UQ26 1411 aa17.53■□□□□ 0.4
RTN3-204ENST00000354497 CHGAP10645 457 aaKnown RBP17.53■□□□□ 0.4
RTN3-204ENST00000354497 KCNA4P22459 653 aa17.53■□□□□ 0.4
RTN3-204ENST00000354497 ATF3P18847 181 aa17.52■□□□□ 0.4
RTN3-204ENST00000354497 HDGFP51858 240 aaKnown RBP17.52■□□□□ 0.4
RTN3-204ENST00000354497 CHD2O14647 1828 aaKnown RBP17.52■□□□□ 0.39
RTN3-204ENST00000354497 ZFYVE9O95405 1425 aa17.51■□□□□ 0.39
RTN3-204ENST00000354497 NUTM2DQ5VT03 806 aaPredicted RBP17.5■□□□□ 0.39
RTN3-204ENST00000354497 CADPS2Q86UW7 1296 aa17.5■□□□□ 0.39
RTN3-204ENST00000354497 AHDC1Q5TGY3 1603 aaPredicted RBP17.49■□□□□ 0.39
RTN3-204ENST00000354497 SHPRHQ149N8 1683 aa17.49■□□□□ 0.39
RTN3-204ENST00000354497 GCC2Q8IWJ2 1684 aa17.49■□□□□ 0.39
RTN3-204ENST00000354497 APLP2Q06481 763 aa17.48■□□□□ 0.39
RTN3-204ENST00000354497 NCOA3Q9Y6Q9 1424 aa17.48■□□□□ 0.39
RTN3-204ENST00000354497 C19orf44Q9H6X5 657 aa17.47■□□□□ 0.39
RTN3-204ENST00000354497 TBX22Q9Y458 520 aa17.47■□□□□ 0.39
RTN3-204ENST00000354497 MYO5BQ9ULV0 1848 aa17.47■□□□□ 0.39
RTN3-204ENST00000354497 AFF2P51816 1311 aa17.47■□□□□ 0.39
RTN3-204ENST00000354497 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.47■□□□□ 0.39
RTN3-204ENST00000354497 LOC105371045A0A1W2PR82 267 aa17.46■□□□□ 0.39
RTN3-204ENST00000354497 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.46■□□□□ 0.39
RTN3-204ENST00000354497 RPRD2Q5VT52 1461 aaKnown RBP17.44■□□□□ 0.38
RTN3-204ENST00000354497 BRINP3Q76B58 766 aa17.44■□□□□ 0.38
RTN3-204ENST00000354497 CDK12Q9NYV4 1490 aaPredicted RBP17.43■□□□□ 0.38
RTN3-204ENST00000354497 TMEM131LA2VDJ0 1609 aa17.43■□□□□ 0.38
RTN3-204ENST00000354497 C8orf37Q96NL8 207 aa17.42■□□□□ 0.38
RTN3-204ENST00000354497 ADAMTS13Q76LX8 1427 aa17.42■□□□□ 0.38
RTN3-204ENST00000354497 DIP2AQ14689 1571 aa17.42■□□□□ 0.38
RTN3-204ENST00000354497 AMOTL2Q9Y2J4 779 aa17.41■□□□□ 0.38
RTN3-204ENST00000354497 RGS12O14924 1447 aa17.4■□□□□ 0.38
RTN3-204ENST00000354497 MYT1Q01538 1121 aa17.39■□□□□ 0.38
RTN3-204ENST00000354497 FAM50AQ14320 339 aaKnown RBP17.39■□□□□ 0.38
RTN3-204ENST00000354497 TRPM2O94759 1503 aa17.39■□□□□ 0.37
RTN3-204ENST00000354497 ASXL1Q8IXJ9 1541 aa17.39■□□□□ 0.37
RTN3-204ENST00000354497 ANKRD50Q9ULJ7 1429 aa17.39■□□□□ 0.37
RTN3-204ENST00000354497 PIK3R4Q99570 1358 aa17.38■□□□□ 0.37
RTN3-204ENST00000354497 ADGRL2O95490 1459 aa17.38■□□□□ 0.37
RTN3-204ENST00000354497 QTRT2Q9H974 415 aaKnown RBP17.38■□□□□ 0.37
RTN3-204ENST00000354497 RBM6P78332 1123 aaKnown RBP17.37■□□□□ 0.37
RTN3-204ENST00000354497 PTPRUQ92729 1446 aa17.36■□□□□ 0.37
RTN3-204ENST00000354497 NPM3O75607 178 aaKnown RBP17.36■□□□□ 0.37
RTN3-204ENST00000354497 DDX17Q92841 729 aaKnown RBP17.35■□□□□ 0.37
RTN3-204ENST00000354497 LRRC59Q96AG4 307 aaKnown RBP17.35■□□□□ 0.37
RTN3-204ENST00000354497 RNF216Q9NWF9 866 aaPredicted RBP17.35■□□□□ 0.37
RTN3-204ENST00000354497 SETD5Q9C0A6 1442 aa17.35■□□□□ 0.37
RTN3-204ENST00000354497 DCCP43146 1447 aa17.33■□□□□ 0.37
RTN3-204ENST00000354497 MST1RQ04912 1400 aa17.33■□□□□ 0.37
RTN3-204ENST00000354497 ADAMTS2O95450 1211 aa17.33■□□□□ 0.36
RTN3-204ENST00000354497 HOXD11P31277 338 aaPredicted RBP17.33■□□□□ 0.36
RTN3-204ENST00000354497 NGLY1Q96IV0 654 aa17.32■□□□□ 0.36
RTN3-204ENST00000354497 NHSL1Q5SYE7 1610 aa17.32■□□□□ 0.36
RTN3-204ENST00000354497 UNC13BO14795 1591 aa17.32■□□□□ 0.36
RTN3-204ENST00000354497 PNPLA6Q8IY17 1366 aa17.32■□□□□ 0.36
RTN3-204ENST00000354497 ATAD2Q6PL18 1390 aa17.31■□□□□ 0.36
RTN3-204ENST00000354497 E9PCH4 1651 aa17.31■□□□□ 0.36
RTN3-204ENST00000354497 ZNF326Q5BKZ1 582 aaKnown RBP17.29■□□□□ 0.36
RTN3-204ENST00000354497 XRN1Q8IZH2 1706 aaKnown RBP17.27■□□□□ 0.36
RTN3-204ENST00000354497 ZRANB1Q9UGI0 708 aa17.27■□□□□ 0.35
RTN3-204ENST00000354497 USP21Q9UK80 565 aa17.26■□□□□ 0.35
RTN3-204ENST00000354497 ADGRL3Q9HAR2 1447 aa17.24■□□□□ 0.35
RTN3-204ENST00000354497 NRXN3Q9Y4C0 1643 aa17.24■□□□□ 0.35
RTN3-204ENST00000354497 METP08581 1390 aa17.24■□□□□ 0.35
RTN3-204ENST00000354497 TRPC5Q9UL62 973 aaPredicted RBP17.23■□□□□ 0.35
RTN3-204ENST00000354497 NUP155O75694 1391 aa17.23■□□□□ 0.35
RTN3-204ENST00000354497 SETBP1Q9Y6X0 1596 aa17.23■□□□□ 0.35
RTN3-204ENST00000354497 IQGAP3Q86VI3 1631 aa17.23■□□□□ 0.35
RTN3-204ENST00000354497 NALCNQ8IZF0 1738 aa17.21■□□□□ 0.35
RTN3-204ENST00000354497 C1orf167Q5SNV9 1468 aa17.2■□□□□ 0.34
RTN3-204ENST00000354497 ITGAEP38570 1179 aa17.18■□□□□ 0.34
RTN3-204ENST00000354497 ORAI2Q96SN7 254 aa17.18■□□□□ 0.34
RTN3-204ENST00000354497 PTCH1Q13635 1447 aa17.16■□□□□ 0.34
RTN3-204ENST00000354497 ATRNO75882 1429 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms