RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 BECN1Q14457 450 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 VSIG10Q8N0Z9 540 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 ZMYND15Q9H091 742 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 MAGI2Q86UL8 1455 aa8.74□□□□□ -1.01
VPS39-202ENST00000348544 A2MP01023 1474 aa8.74□□□□□ -1.01
VPS39-202ENST00000348544 SHANK2Q9UPX8 1470 aa8.74□□□□□ -1.01
VPS39-202ENST00000348544 PNNQ9H307 717 aaKnown RBP8.74□□□□□ -1.01
VPS39-202ENST00000348544 ABCC10Q5T3U5 1492 aa8.73□□□□□ -1.01
VPS39-202ENST00000348544 GLIPR1L2Q4G1C9 344 aa8.73□□□□□ -1.01
VPS39-202ENST00000348544 TBC1D2Q9BYX2 928 aa8.73□□□□□ -1.01
VPS39-202ENST00000348544 NKTRP30414 1462 aaKnown RBP8.73□□□□□ -1.01
VPS39-202ENST00000348544 PDS5BQ9NTI5 1447 aa8.73□□□□□ -1.01
VPS39-202ENST00000348544 GOLGA6L3A6NEY3 463 aa8.73□□□□□ -1.01
VPS39-202ENST00000348544 WDR43Q15061 677 aaKnown RBP eCLIP8.73□□□□□ -1.01
VPS39-202ENST00000348544 WDR7Q9Y4E6 1490 aa8.73□□□□□ -1.01
VPS39-202ENST00000348544 RGL3Q3MIN7 710 aa8.72□□□□□ -1.01
VPS39-202ENST00000348544 FAM135AQ9P2D6 1515 aa8.72□□□□□ -1.01
VPS39-202ENST00000348544 MAPK8IP3Q9UPT6 1336 aa8.72□□□□□ -1.01
VPS39-202ENST00000348544 PLA2R1Q13018 1463 aa8.72□□□□□ -1.01
VPS39-202ENST00000348544 HSP90AA2PQ14568 343 aaPredicted RBP8.72□□□□□ -1.01
VPS39-202ENST00000348544 CCDC146Q8IYE0 955 aa8.72□□□□□ -1.01
VPS39-202ENST00000348544 GZF1Q9H116 711 aaPredicted RBP8.72□□□□□ -1.01
VPS39-202ENST00000348544 TBC1D32Q96NH3 1257 aa8.71□□□□□ -1.01
VPS39-202ENST00000348544 PLB1Q6P1J6 1458 aa8.71□□□□□ -1.02
VPS39-202ENST00000348544 CCDC144AA2RUR9 1427 aa8.71□□□□□ -1.02
VPS39-202ENST00000348544 RRP9O43818 475 aaKnown RBP8.71□□□□□ -1.02
VPS39-202ENST00000348544 MCM4P33991 863 aa8.71□□□□□ -1.02
VPS39-202ENST00000348544 AMER1Q5JTC6 1135 aaPredicted RBP8.71□□□□□ -1.02
VPS39-202ENST00000348544 HSP90AA1P07900 732 aaKnown RBP8.7□□□□□ -1.02
VPS39-202ENST00000348544 TMF1P82094 1093 aa8.7□□□□□ -1.02
VPS39-202ENST00000348544 PANK1Q8TE04 598 aa8.7□□□□□ -1.02
VPS39-202ENST00000348544 CLUAP1Q96AJ1 413 aa8.7□□□□□ -1.02
VPS39-202ENST00000348544 ERBB4Q15303 1308 aa8.7□□□□□ -1.02
VPS39-202ENST00000348544 RNF216Q9NWF9 866 aaPredicted RBP8.7□□□□□ -1.02
VPS39-202ENST00000348544 CGNL1Q0VF96 1302 aa8.7□□□□□ -1.02
VPS39-202ENST00000348544 MYO5CQ9NQX4 1742 aa8.69□□□□□ -1.02
VPS39-202ENST00000348544 APAF1O14727 1248 aa8.69□□□□□ -1.02
VPS39-202ENST00000348544 SPRYD3Q8NCJ5 442 aa8.69□□□□□ -1.02
VPS39-202ENST00000348544 COG6Q9Y2V7 657 aa8.69□□□□□ -1.02
VPS39-202ENST00000348544 ABCC2Q92887 1545 aa8.69□□□□□ -1.02
VPS39-202ENST00000348544 PIK3C2GO75747 1445 aa8.69□□□□□ -1.02
VPS39-202ENST00000348544 PDE3AQ14432 1141 aa8.68□□□□□ -1.02
VPS39-202ENST00000348544 RTEL1-TNFRSF6BF6WH68 1400 aa8.68□□□□□ -1.02
VPS39-202ENST00000348544 RNF17Q9BXT8 1623 aaKnown RBP8.68□□□□□ -1.02
VPS39-202ENST00000348544 KNSTRNQ9Y448 316 aa8.68□□□□□ -1.02
VPS39-202ENST00000348544 EIF2AK4Q9P2K8 1649 aaKnown RBP8.68□□□□□ -1.02
VPS39-202ENST00000348544 TRAK2O60296 914 aa8.67□□□□□ -1.02
VPS39-202ENST00000348544 SYNJ2O15056 1496 aa8.67□□□□□ -1.02
VPS39-202ENST00000348544 CCDC141Q6ZP82 1450 aa8.67□□□□□ -1.02
VPS39-202ENST00000348544 E9PSI1 815 aa8.67□□□□□ -1.02
VPS39-202ENST00000348544 PLXNC1O60486 1568 aa8.67□□□□□ -1.02
VPS39-202ENST00000348544 MRE11P49959 708 aa8.67□□□□□ -1.02
VPS39-202ENST00000348544 HNRNPMP52272 730 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS39-202ENST00000348544 PCDHB15Q9Y5E8 787 aa8.67□□□□□ -1.02
VPS39-202ENST00000348544 ASXL1Q8IXJ9 1541 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 TSPY4P0CV99 314 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 TSPY10P0CW01 314 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 TNNQ9UQP3 1299 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 NUP160Q12769 1436 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 ESPNB1AK53 854 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 UPF2Q9HAU5 1272 aaKnown RBP8.66□□□□□ -1.02
VPS39-202ENST00000348544 GRPEL1Q9HAV7 217 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 PDZRN3Q9UPQ7 1066 aa8.66□□□□□ -1.02
VPS39-202ENST00000348544 CENPJQ9HC77 1338 aaPredicted RBP8.65□□□□□ -1.02
VPS39-202ENST00000348544 SYNMO15061 1565 aa8.65□□□□□ -1.02
VPS39-202ENST00000348544 ZMYM3Q14202 1370 aa8.65□□□□□ -1.02
VPS39-202ENST00000348544 NINLQ9Y2I6 1382 aa8.65□□□□□ -1.02
VPS39-202ENST00000348544 HOXD11P31277 338 aaPredicted RBP8.65□□□□□ -1.02
VPS39-202ENST00000348544 ARHGEF5Q12774 1597 aa8.65□□□□□ -1.02
VPS39-202ENST00000348544 MYOM1P52179 1685 aa8.65□□□□□ -1.02
VPS39-202ENST00000348544 RLBP1P12271 317 aa8.65□□□□□ -1.03
VPS39-202ENST00000348544 ZNF692Q9BU19 519 aaPredicted RBP8.65□□□□□ -1.03
VPS39-202ENST00000348544 CHMP5Q9NZZ3 219 aa8.65□□□□□ -1.03
VPS39-202ENST00000348544 IQGAP1P46940 1657 aa8.64□□□□□ -1.03
VPS39-202ENST00000348544 CANXP27824 592 aaKnown RBP8.64□□□□□ -1.03
VPS39-202ENST00000348544 MYH16Q9H6N6 1097 aa8.64□□□□□ -1.03
VPS39-202ENST00000348544 UNC13BO14795 1591 aa8.64□□□□□ -1.03
VPS39-202ENST00000348544 MAGI1Q96QZ7 1491 aaPredicted RBP8.63□□□□□ -1.03
VPS39-202ENST00000348544 GAS2L3Q86XJ1 694 aa8.63□□□□□ -1.03
VPS39-202ENST00000348544 PMFBP1Q8TBY8 1022 aa8.63□□□□□ -1.03
VPS39-202ENST00000348544 GRIN2AQ12879 1464 aa8.62□□□□□ -1.03
VPS39-202ENST00000348544 NPC1L1Q9UHC9 1359 aa8.62□□□□□ -1.03
VPS39-202ENST00000348544 WWC1Q8IX03 1113 aa8.62□□□□□ -1.03
VPS39-202ENST00000348544 ABCA8O94911 1581 aa8.62□□□□□ -1.03
VPS39-202ENST00000348544 DDIT3P35638 169 aa8.62□□□□□ -1.03
VPS39-202ENST00000348544 RARSP54136 660 aaKnown RBP8.62□□□□□ -1.03
VPS39-202ENST00000348544 C22orf23Q9BZE7 217 aa8.62□□□□□ -1.03
VPS39-202ENST00000348544 SAMD9LQ8IVG5 1584 aa8.62□□□□□ -1.03
VPS39-202ENST00000348544 NCOA3Q9Y6Q9 1424 aa8.61□□□□□ -1.03
VPS39-202ENST00000348544 MADDQ8WXG6 1647 aa8.61□□□□□ -1.03
VPS39-202ENST00000348544 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.61□□□□□ -1.039e-6■■■□□ 18.9
VPS39-202ENST00000348544 IQGAP3Q86VI3 1631 aa8.61□□□□□ -1.03
VPS39-202ENST00000348544 DDX11L8A8MPP1 907 aa8.6□□□□□ -1.03
VPS39-202ENST00000348544 MFAP1P55081 439 aaKnown RBP8.6□□□□□ -1.03
VPS39-202ENST00000348544 DNAJC5BQ9UF47 199 aa8.6□□□□□ -1.03
VPS39-202ENST00000348544 ATP10AO60312 1499 aa8.6□□□□□ -1.03
VPS39-202ENST00000348544 ATP10BO94823 1461 aa8.6□□□□□ -1.03
VPS39-202ENST00000348544 PLEKHD1A6NEE1 506 aa8.6□□□□□ -1.03
VPS39-202ENST00000348544 BCL2L13Q9BXK5 485 aa8.6□□□□□ -1.03
VPS39-202ENST00000348544 ISY1Q9ULR0 285 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms