RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ABCA6Q8N139 1617 aa20.73■□□□□ 0.91
UPF3B-202ENST00000345865 FRMPD1Q5SYB0 1578 aa20.72■□□□□ 0.91
UPF3B-202ENST00000345865 LMTK2Q8IWU2 1503 aa20.72■□□□□ 0.91
UPF3B-202ENST00000345865 POGZQ7Z3K3 1410 aa20.72■□□□□ 0.91
UPF3B-202ENST00000345865 IFT172Q9UG01 1749 aa20.71■□□□□ 0.91
UPF3B-202ENST00000345865 MYOM2P54296 1465 aa20.71■□□□□ 0.91
UPF3B-202ENST00000345865 MYOM1P52179 1685 aa20.71■□□□□ 0.91
UPF3B-202ENST00000345865 AMER1Q5JTC6 1135 aaPredicted RBP20.71■□□□□ 0.91
UPF3B-202ENST00000345865 SYNMO15061 1565 aa20.7■□□□□ 0.9
UPF3B-202ENST00000345865 CFAP65Q6ZU64 1925 aaKnown RBP20.69■□□□□ 0.9
UPF3B-202ENST00000345865 BLMP54132 1417 aaPredicted RBP20.69■□□□□ 0.9
UPF3B-202ENST00000345865 MLH3Q9UHC1 1453 aa20.68■□□□□ 0.9
UPF3B-202ENST00000345865 KNSTRNQ9Y448 316 aa20.68■□□□□ 0.9
UPF3B-202ENST00000345865 CDCA7LQ96GN5 454 aa20.67■□□□□ 0.9
UPF3B-202ENST00000345865 CFAP74Q9C0B2 1584 aa20.67■□□□□ 0.9
UPF3B-202ENST00000345865 CDCA8Q53HL2 280 aa20.67■□□□□ 0.9
UPF3B-202ENST00000345865 EIF3AQ14152 1382 aaKnown RBP20.67■□□□□ 0.9
UPF3B-202ENST00000345865 NPATQ14207 1427 aa20.66■□□□□ 0.9
UPF3B-202ENST00000345865 INSRP06213 1382 aa20.66■□□□□ 0.9
UPF3B-202ENST00000345865 NRXN1Q9ULB1 1477 aa20.65■□□□□ 0.9
UPF3B-202ENST00000345865 PPP2R1AP30153 589 aa20.65■□□□□ 0.9
UPF3B-202ENST00000345865 GGT6Q6P531 493 aa20.65■□□□□ 0.9
UPF3B-202ENST00000345865 HECW2Q9P2P5 1572 aa20.65■□□□□ 0.9
UPF3B-202ENST00000345865 ZMYM4Q5VZL5 1548 aa20.65■□□□□ 0.9
UPF3B-202ENST00000345865 ADGRB3O60242 1522 aa20.64■□□□□ 0.89
UPF3B-202ENST00000345865 PDE3BQ13370 1112 aa20.64■□□□□ 0.89
UPF3B-202ENST00000345865 ERVK-7P63135 1459 aa20.63■□□□□ 0.89
UPF3B-202ENST00000345865 ADAMTS8Q9UP79 889 aa20.63■□□□□ 0.89
UPF3B-202ENST00000345865 KDM5AP29375 1690 aaKnown RBP20.63■□□□□ 0.89
UPF3B-202ENST00000345865 NOS1P29475 1434 aa20.63■□□□□ 0.89
UPF3B-202ENST00000345865 ASXL1Q8IXJ9 1541 aa20.63■□□□□ 0.89
UPF3B-202ENST00000345865 RRP1P56182 461 aaKnown RBP20.62■□□□□ 0.89
UPF3B-202ENST00000345865 RCAN3Q9UKA8 241 aa20.62■□□□□ 0.89
UPF3B-202ENST00000345865 RAPGEF3O95398 923 aa20.61■□□□□ 0.89
UPF3B-202ENST00000345865 CCDC136Q96JN2 1154 aa20.61■□□□□ 0.89
UPF3B-202ENST00000345865 CHGAP10645 457 aaKnown RBP20.6■□□□□ 0.89
UPF3B-202ENST00000345865 MSH5O43196 834 aa20.59■□□□□ 0.89
UPF3B-202ENST00000345865 ANP32EQ9BTT0 268 aa20.59■□□□□ 0.89
UPF3B-202ENST00000345865 ABCC3O15438 1527 aa20.58■□□□□ 0.89
UPF3B-202ENST00000345865 PPLO60437 1756 aa20.58■□□□□ 0.88
UPF3B-202ENST00000345865 MYT1Q01538 1121 aa20.58■□□□□ 0.88
UPF3B-202ENST00000345865 NPC1L1Q9UHC9 1359 aa20.57■□□□□ 0.88
UPF3B-202ENST00000345865 MYO3AQ8NEV4 1616 aa20.57■□□□□ 0.88
UPF3B-202ENST00000345865 FANCIQ9NVI1 1328 aa20.56■□□□□ 0.88
UPF3B-202ENST00000345865 SIGLEC1Q9BZZ2 1709 aa20.56■□□□□ 0.88
UPF3B-202ENST00000345865 CARD14Q9BXL6 1004 aa20.56■□□□□ 0.88
UPF3B-202ENST00000345865 NEO1Q92859 1461 aa20.55■□□□□ 0.88
UPF3B-202ENST00000345865 PIK3C2GO75747 1445 aa20.55■□□□□ 0.88
UPF3B-202ENST00000345865 EXOC6Q8TAG9 804 aa20.55■□□□□ 0.88
UPF3B-202ENST00000345865 SETBP1Q9Y6X0 1596 aa20.54■□□□□ 0.88
UPF3B-202ENST00000345865 CAMSAP1Q5T5Y3 1602 aa20.53■□□□□ 0.88
UPF3B-202ENST00000345865 C14orf93Q9H972 538 aaKnown RBP20.53■□□□□ 0.88
UPF3B-202ENST00000345865 PLEKHH1Q9ULM0 1364 aa20.52■□□□□ 0.88
UPF3B-202ENST00000345865 SBNO2Q9Y2G9 1366 aa20.52■□□□□ 0.88
UPF3B-202ENST00000345865 DIP2CQ9Y2E4 1556 aa20.52■□□□□ 0.88
UPF3B-202ENST00000345865 TRAK1Q9UPV9 953 aa20.52■□□□□ 0.88
UPF3B-202ENST00000345865 ADGRB1O14514 1584 aa20.52■□□□□ 0.88
UPF3B-202ENST00000345865 WDR43Q15061 677 aaKnown RBP eCLIP20.52■□□□□ 0.87
UPF3B-202ENST00000345865 CENPJQ9HC77 1338 aaPredicted RBP20.51■□□□□ 0.87
UPF3B-202ENST00000345865 SLC24A1O60721 1099 aa20.51■□□□□ 0.87
UPF3B-202ENST00000345865 TMEM132EQ6IEE7 984 aa20.51■□□□□ 0.87
UPF3B-202ENST00000345865 RICTORQ6R327 1708 aa20.5■□□□□ 0.87
UPF3B-202ENST00000345865 PLIN1O60240 522 aa20.49■□□□□ 0.87
UPF3B-202ENST00000345865 ZC3H13Q5T200 1668 aaKnown RBP20.48■□□□□ 0.87
UPF3B-202ENST00000345865 NUTM2DQ5VT03 806 aaPredicted RBP20.48■□□□□ 0.87
UPF3B-202ENST00000345865 PIK3C2BO00750 1634 aa20.48■□□□□ 0.87
UPF3B-202ENST00000345865 ZNF521Q96K83 1311 aa20.47■□□□□ 0.87
UPF3B-202ENST00000345865 QRICH2Q9H0J4 1663 aa20.47■□□□□ 0.87
UPF3B-202ENST00000345865 YEATS2Q9ULM3 1422 aa20.47■□□□□ 0.87
UPF3B-202ENST00000345865 RPGRIP1LQ68CZ1 1315 aa20.46■□□□□ 0.87
UPF3B-202ENST00000345865 DUSP27Q5VZP5 1158 aa20.44■□□□□ 0.86
UPF3B-202ENST00000345865 CCDC146Q8IYE0 955 aa20.44■□□□□ 0.86
UPF3B-202ENST00000345865 NEXMIFQ5QGS0 1516 aa20.43■□□□□ 0.86
UPF3B-202ENST00000345865 SLC12A5Q9H2X9 1139 aa20.43■□□□□ 0.86
UPF3B-202ENST00000345865 IDI1Q13907 227 aa20.42■□□□□ 0.86
UPF3B-202ENST00000345865 ARHGAP31Q2M1Z3 1444 aa20.41■□□□□ 0.86
UPF3B-202ENST00000345865 GLI2P10070 1586 aa20.4■□□□□ 0.86
UPF3B-202ENST00000345865 CYB5RLQ6IPT4 315 aa20.4■□□□□ 0.86
UPF3B-202ENST00000345865 NSD3Q9BZ95 1437 aa20.4■□□□□ 0.86
UPF3B-202ENST00000345865 APAF1O14727 1248 aa20.38■□□□□ 0.85
UPF3B-202ENST00000345865 GOLGA2Q08379 1002 aa20.38■□□□□ 0.85
UPF3B-202ENST00000345865 C20orf194Q5TEA3 1177 aa20.38■□□□□ 0.85
UPF3B-202ENST00000345865 CRBNQ96SW2 442 aa20.38■□□□□ 0.85
UPF3B-202ENST00000345865 VGFO15240 615 aaPredicted RBP20.37■□□□□ 0.85
UPF3B-202ENST00000345865 SPINK5Q9NQ38 1064 aaPredicted RBP20.37■□□□□ 0.85
UPF3B-202ENST00000345865 ARHGEF28Q8N1W1 1705 aaKnown RBP20.37■□□□□ 0.85
UPF3B-202ENST00000345865 MYO5BQ9ULV0 1848 aa20.37■□□□□ 0.85
UPF3B-202ENST00000345865 SLFN5Q08AF3 891 aa20.36■□□□□ 0.85
UPF3B-202ENST00000345865 TRMT2AQ8IZ69 625 aaKnown RBP20.35■□□□□ 0.85
UPF3B-202ENST00000345865 SENP3Q9H4L4 574 aaPredicted RBP20.35■□□□□ 0.85
UPF3B-202ENST00000345865 TULP4Q9NRJ4 1543 aa20.34■□□□□ 0.85
UPF3B-202ENST00000345865 POLR3AO14802 1390 aaPredicted RBP20.34■□□□□ 0.85
UPF3B-202ENST00000345865 TNNT2P45379 298 aaPredicted RBP20.33■□□□□ 0.84
UPF3B-202ENST00000345865 PREX1Q8TCU6 1659 aa20.32■□□□□ 0.84
UPF3B-202ENST00000345865 DMRT2Q9Y5R5 561 aa20.32■□□□□ 0.84
UPF3B-202ENST00000345865 MORC1Q86VD1 984 aa20.32■□□□□ 0.84
UPF3B-202ENST00000345865 SLC52A1Q9NWF4 448 aa20.32■□□□□ 0.84
UPF3B-202ENST00000345865 SHPRHQ149N8 1683 aa20.31■□□□□ 0.84
UPF3B-202ENST00000345865 TMEM131LA2VDJ0 1609 aa20.3■□□□□ 0.84
UPF3B-202ENST00000345865 ZFYVE9O95405 1425 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms