RNA–Protein interactions for RNA: ENST00000345392.2

VHL-202, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best) BASIC

Gene VHL, Length 2,696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-202ENST00000345392 FRAT2O75474 233 aaPredicted RBP23.19■■□□□ 1.3
VHL-202ENST00000345392 WDR43Q15061 677 aaKnown RBP eCLIP23.18■■□□□ 1.3
VHL-202ENST00000345392 MYO5CQ9NQX4 1742 aa23.16■■□□□ 1.3
VHL-202ENST00000345392 GOLGA2Q08379 1002 aa23.16■■□□□ 1.3
VHL-202ENST00000345392 UNC13BO14795 1591 aa23.15■■□□□ 1.3
VHL-202ENST00000345392 PPP2R1AP30153 589 aa23.15■■□□□ 1.3
VHL-202ENST00000345392 NPM1P06748 294 aaKnown RBP eCLIP23.14■■□□□ 1.29
VHL-202ENST00000345392 KNSTRNQ9Y448 316 aa23.13■■□□□ 1.29
VHL-202ENST00000345392 PRDM15P57071 1507 aaPredicted RBP23.12■■□□□ 1.29
VHL-202ENST00000345392 CCDC146Q8IYE0 955 aa23.12■■□□□ 1.29
VHL-202ENST00000345392 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.12■■□□□ 1.29
VHL-202ENST00000345392 ZCCHC11Q5TAX3 1644 aaKnown RBP23.11■■□□□ 1.29
VHL-202ENST00000345392 ZNF521Q96K83 1311 aa23.11■■□□□ 1.29
VHL-202ENST00000345392 SPINK5Q9NQ38 1064 aaPredicted RBP23.09■■□□□ 1.29
VHL-202ENST00000345392 IQGAP3Q86VI3 1631 aa23.09■■□□□ 1.29
VHL-202ENST00000345392 MAGI2Q86UL8 1455 aa23.09■■□□□ 1.29
VHL-202ENST00000345392 BCAR3O75815 825 aa23.08■■□□□ 1.29
VHL-202ENST00000345392 SLFN5Q08AF3 891 aa23.08■■□□□ 1.29
VHL-202ENST00000345392 MAST1Q9Y2H9 1570 aa23.07■■□□□ 1.28
VHL-202ENST00000345392 AFAP1Q8N556 730 aa23.07■■□□□ 1.28
VHL-202ENST00000345392 UHRF1BP1LA0JNW5 1464 aa23.07■■□□□ 1.28
VHL-202ENST00000345392 TRAPPC8Q9Y2L5 1435 aa23.07■■□□□ 1.28
VHL-202ENST00000345392 AMER1Q5JTC6 1135 aaPredicted RBP23.06■■□□□ 1.28
VHL-202ENST00000345392 DNAJC5Q9H3Z4 198 aa23.05■■□□□ 1.28
VHL-202ENST00000345392 DUOX2Q9NRD8 1548 aa23.04■■□□□ 1.28
VHL-202ENST00000345392 PLXNC1O60486 1568 aa23.04■■□□□ 1.28
VHL-202ENST00000345392 WDR7Q9Y4E6 1490 aa23.03■■□□□ 1.28
VHL-202ENST00000345392 IGHDP01880 384 aa23.03■■□□□ 1.28
VHL-202ENST00000345392 APAF1O14727 1248 aa23.03■■□□□ 1.28
VHL-202ENST00000345392 EIF5BO60841 1220 aaKnown RBP23.02■■□□□ 1.28
VHL-202ENST00000345392 EFCAB2Q5VUJ9 269 aa23.02■■□□□ 1.28
VHL-202ENST00000345392 LAMC1P11047 1609 aa23.01■■□□□ 1.27
VHL-202ENST00000345392 ASXL2Q76L83 1435 aa23■■□□□ 1.27
VHL-202ENST00000345392 EIF2AK4Q9P2K8 1649 aaKnown RBP23■■□□□ 1.27
VHL-202ENST00000345392 SEC24BO95487 1268 aa22.99■■□□□ 1.27
VHL-202ENST00000345392 TRMT2AQ8IZ69 625 aaKnown RBP22.99■■□□□ 1.27
VHL-202ENST00000345392 USP19O94966 1318 aa22.98■■□□□ 1.27
VHL-202ENST00000345392 DMRT2Q9Y5R5 561 aa22.98■■□□□ 1.27
VHL-202ENST00000345392 PLCH2O75038 1416 aa22.98■■□□□ 1.27
VHL-202ENST00000345392 SPAG9O60271 1321 aaKnown RBP22.97■■□□□ 1.27
VHL-202ENST00000345392 POGKQ9P215 609 aa22.95■■□□□ 1.26
VHL-202ENST00000345392 EIF3AQ14152 1382 aaKnown RBP22.95■■□□□ 1.26
VHL-202ENST00000345392 SLKQ9H2G2 1235 aaPredicted RBP22.95■■□□□ 1.26
VHL-202ENST00000345392 ATP10AO60312 1499 aa22.94■■□□□ 1.26
VHL-202ENST00000345392 NKTRP30414 1462 aaKnown RBP22.94■■□□□ 1.26
VHL-202ENST00000345392 RNF17Q9BXT8 1623 aaKnown RBP22.93■■□□□ 1.26
VHL-202ENST00000345392 ABCC1P33527 1531 aa22.92■■□□□ 1.26
VHL-202ENST00000345392 MADDQ8WXG6 1647 aa22.92■■□□□ 1.26
VHL-202ENST00000345392 PANK1Q8TE04 598 aa22.92■■□□□ 1.26
VHL-202ENST00000345392 COG6Q9Y2V7 657 aa22.92■■□□□ 1.26
VHL-202ENST00000345392 E9PSI1 815 aa22.9■■□□□ 1.26
VHL-202ENST00000345392 CANXP27824 592 aaKnown RBP22.89■■□□□ 1.25
VHL-202ENST00000345392 ASXL1Q8IXJ9 1541 aa22.89■■□□□ 1.25
VHL-202ENST00000345392 PIK3C2GO75747 1445 aa22.88■■□□□ 1.25
VHL-202ENST00000345392 CDCA8Q53HL2 280 aa22.88■■□□□ 1.25
VHL-202ENST00000345392 KIF3BO15066 747 aa22.87■■□□□ 1.25
VHL-202ENST00000345392 CFAP70Q5T0N1 1121 aa22.87■■□□□ 1.25
VHL-202ENST00000345392 CLUAP1Q96AJ1 413 aa22.87■■□□□ 1.25
VHL-202ENST00000345392 FAM43AQ8N2R8 423 aa22.87■■□□□ 1.25
VHL-202ENST00000345392 CLTCL1P53675 1640 aa22.87■■□□□ 1.25
VHL-202ENST00000345392 IQGAP1P46940 1657 aa22.85■■□□□ 1.25
VHL-202ENST00000345392 CGNL1Q0VF96 1302 aa22.85■■□□□ 1.25
VHL-202ENST00000345392 UGGT1Q9NYU2 1555 aa22.85■■□□□ 1.25
VHL-202ENST00000345392 BECN1Q14457 450 aa22.85■■□□□ 1.25
VHL-202ENST00000345392 SCAF11Q99590 1463 aaKnown RBP22.84■■□□□ 1.25
VHL-202ENST00000345392 CENPJQ9HC77 1338 aaPredicted RBP22.84■■□□□ 1.25
VHL-202ENST00000345392 FAM69CQ0P6D2 419 aa22.84■■□□□ 1.25
VHL-202ENST00000345392 PDE3AQ14432 1141 aa22.83■■□□□ 1.25
VHL-202ENST00000345392 NEUROD2Q15784 382 aa22.83■■□□□ 1.24
VHL-202ENST00000345392 TRPM2O94759 1503 aa22.83■■□□□ 1.24
VHL-202ENST00000345392 MAPK8IP3Q9UPT6 1336 aa22.82■■□□□ 1.24
VHL-202ENST00000345392 ZFYVE16Q7Z3T8 1539 aa22.82■■□□□ 1.24
VHL-202ENST00000345392 ARXQ96QS3 562 aa22.82■■□□□ 1.24
VHL-202ENST00000345392 SYNMO15061 1565 aa22.82■■□□□ 1.24
VHL-202ENST00000345392 ADGRF5Q8IZF2 1346 aa22.81■■□□□ 1.24
VHL-202ENST00000345392 SPHKAPQ2M3C7 1700 aa22.8■■□□□ 1.24
VHL-202ENST00000345392 WWC1Q8IX03 1113 aa22.8■■□□□ 1.24
VHL-202ENST00000345392 SCAPERQ9BY12 1400 aa22.79■■□□□ 1.24
VHL-202ENST00000345392 TNNQ9UQP3 1299 aa22.79■■□□□ 1.24
VHL-202ENST00000345392 CEP152O94986 1710 aa22.78■■□□□ 1.24
VHL-202ENST00000345392 SPRYD3Q8NCJ5 442 aa22.78■■□□□ 1.24
VHL-202ENST00000345392 CARD14Q9BXL6 1004 aa22.78■■□□□ 1.24
VHL-202ENST00000345392 RRP7AQ9Y3A4 280 aaKnown RBP22.78■■□□□ 1.24
VHL-202ENST00000345392 MYOM1P52179 1685 aa22.77■■□□□ 1.24
VHL-202ENST00000345392 VIRMAQ69YN4 1812 aaKnown RBP22.77■■□□□ 1.24
VHL-202ENST00000345392 CHGAP10645 457 aaKnown RBP22.77■■□□□ 1.24
VHL-202ENST00000345392 TNNT2P45379 298 aaPredicted RBP22.77■■□□□ 1.24
VHL-202ENST00000345392 RSPH6AQ9H0K4 717 aa22.77■■□□□ 1.24
VHL-202ENST00000345392 ANTXR1Q9H6X2 564 aa22.77■■□□□ 1.24
VHL-202ENST00000345392 NPC1L1Q9UHC9 1359 aa22.77■■□□□ 1.23
VHL-202ENST00000345392 PTPRTO14522 1441 aa22.76■■□□□ 1.23
VHL-202ENST00000345392 PCDHB15Q9Y5E8 787 aa22.76■■□□□ 1.23
VHL-202ENST00000345392 NLRP1Q9C000 1473 aa22.76■■□□□ 1.23
VHL-202ENST00000345392 UBE2Q2Q8WVN8 375 aa22.76■■□□□ 1.23
VHL-202ENST00000345392 BCL2L13Q9BXK5 485 aa22.76■■□□□ 1.23
VHL-202ENST00000345392 RRAGDQ9NQL2 400 aaPredicted RBP22.75■■□□□ 1.23
VHL-202ENST00000345392 TRHP20396 242 aaPredicted RBP22.75■■□□□ 1.23
VHL-202ENST00000345392 RLBP1P12271 317 aa22.75■■□□□ 1.23
VHL-202ENST00000345392 TBC1D2Q9BYX2 928 aa22.74■■□□□ 1.23
VHL-202ENST00000345392 KANK1Q14678 1352 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms