RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 SYNMO15061 1565 aa17.74■□□□□ 0.43
CLK3-201ENST00000345005 AEBP2Q6ZN18 517 aaPredicted RBP17.73■□□□□ 0.43
CLK3-201ENST00000345005 PPLO60437 1756 aa17.72■□□□□ 0.43
CLK3-201ENST00000345005 ST20-MTHFSA0A0A6YYL1 179 aa17.72■□□□□ 0.43
CLK3-201ENST00000345005 CLTCQ00610 1675 aaKnown RBP17.71■□□□□ 0.43
CLK3-201ENST00000345005 KDM4FA0A1W2PPD8 638 aa17.7■□□□□ 0.42
CLK3-201ENST00000345005 RPGRIP1LQ68CZ1 1315 aa17.7■□□□□ 0.42
CLK3-201ENST00000345005 CHGAP10645 457 aaKnown RBP17.7■□□□□ 0.42
CLK3-201ENST00000345005 SLC52A1Q9NWF4 448 aa17.7■□□□□ 0.42
CLK3-201ENST00000345005 IQGAP1P46940 1657 aa17.69■□□□□ 0.42
CLK3-201ENST00000345005 CCER2I3L3R5 266 aa17.68■□□□□ 0.42
CLK3-201ENST00000345005 NRXN1Q9ULB1 1477 aa17.67■□□□□ 0.42
CLK3-201ENST00000345005 MYO5BQ9ULV0 1848 aa17.65■□□□□ 0.42
CLK3-201ENST00000345005 ADGRF5Q8IZF2 1346 aa17.65■□□□□ 0.42
CLK3-201ENST00000345005 IDI1Q13907 227 aa17.64■□□□□ 0.41
CLK3-201ENST00000345005 ERVK-7P63135 1459 aa17.64■□□□□ 0.41
CLK3-201ENST00000345005 SCAF11Q99590 1463 aaKnown RBP17.63■□□□□ 0.41
CLK3-201ENST00000345005 MLECQ14165 292 aa17.63■□□□□ 0.41
CLK3-201ENST00000345005 ESF1Q9H501 851 aaKnown RBP17.63■□□□□ 0.41
CLK3-201ENST00000345005 TMEM131LA2VDJ0 1609 aa17.62■□□□□ 0.41
CLK3-201ENST00000345005 POLR3GLQ9BT43 218 aa17.62■□□□□ 0.41
CLK3-201ENST00000345005 SPATA31D1Q6ZQQ2 1576 aa17.61■□□□□ 0.41
CLK3-201ENST00000345005 SETBP1Q9Y6X0 1596 aa17.61■□□□□ 0.41
CLK3-201ENST00000345005 VGFO15240 615 aaPredicted RBP17.61■□□□□ 0.41
CLK3-201ENST00000345005 NEXMIFQ5QGS0 1516 aa17.6■□□□□ 0.41
CLK3-201ENST00000345005 CFAP70Q5T0N1 1121 aa17.6■□□□□ 0.41
CLK3-201ENST00000345005 FBXO31Q5XUX0 539 aaPredicted RBP17.6■□□□□ 0.41
CLK3-201ENST00000345005 TESK2Q96S53 571 aa17.6■□□□□ 0.41
CLK3-201ENST00000345005 EIF3AQ14152 1382 aaKnown RBP17.59■□□□□ 0.41
CLK3-201ENST00000345005 PIK3C2GO75747 1445 aa17.59■□□□□ 0.41
CLK3-201ENST00000345005 TMF1P82094 1093 aa17.58■□□□□ 0.4
CLK3-201ENST00000345005 ZFYVE9O95405 1425 aa17.57■□□□□ 0.4
CLK3-201ENST00000345005 C14orf93Q9H972 538 aaKnown RBP17.57■□□□□ 0.4
CLK3-201ENST00000345005 SLC24A1O60721 1099 aa17.56■□□□□ 0.4
CLK3-201ENST00000345005 ZMYM3Q14202 1370 aa17.56■□□□□ 0.4
CLK3-201ENST00000345005 PRKRIP1Q9H875 184 aaPredicted RBP17.54■□□□□ 0.4
CLK3-201ENST00000345005 TSHZ2Q9NRE2 1034 aa17.54■□□□□ 0.4
CLK3-201ENST00000345005 DISP3Q9P2K9 1392 aa17.53■□□□□ 0.4
CLK3-201ENST00000345005 CDCA8Q53HL2 280 aa17.53■□□□□ 0.4
CLK3-201ENST00000345005 STAG3Q9UJ98 1225 aa17.53■□□□□ 0.4
CLK3-201ENST00000345005 MYO3AQ8NEV4 1616 aa17.52■□□□□ 0.4
CLK3-201ENST00000345005 ANP32EQ9BTT0 268 aa17.52■□□□□ 0.4
CLK3-201ENST00000345005 NEFLP07196 543 aa17.51■□□□□ 0.39
CLK3-201ENST00000345005 ADGRB1O14514 1584 aa17.5■□□□□ 0.39
CLK3-201ENST00000345005 KDM5AP29375 1690 aaKnown RBP17.48■□□□□ 0.39
CLK3-201ENST00000345005 NUTM2DQ5VT03 806 aaPredicted RBP17.48■□□□□ 0.39
CLK3-201ENST00000345005 A2ML1A8K2U0 1454 aa17.48■□□□□ 0.39
CLK3-201ENST00000345005 FER1L4A9Z1Z3 1794 aa17.47■□□□□ 0.39
CLK3-201ENST00000345005 SBNO2Q9Y2G9 1366 aa17.46■□□□□ 0.39
CLK3-201ENST00000345005 KTN1Q86UP2 1357 aaKnown RBP17.45■□□□□ 0.38
CLK3-201ENST00000345005 TNRQ92752 1358 aa17.45■□□□□ 0.38
CLK3-201ENST00000345005 QRICH2Q9H0J4 1663 aa17.45■□□□□ 0.38
CLK3-201ENST00000345005 CENPJQ9HC77 1338 aaPredicted RBP17.45■□□□□ 0.38
CLK3-201ENST00000345005 TMEM132EQ6IEE7 984 aa17.44■□□□□ 0.38
CLK3-201ENST00000345005 BCL11AQ9H165 835 aa17.44■□□□□ 0.38
CLK3-201ENST00000345005 ARHGEF28Q8N1W1 1705 aaKnown RBP17.43■□□□□ 0.38
CLK3-201ENST00000345005 TRAK1Q9UPV9 953 aa17.43■□□□□ 0.38
CLK3-201ENST00000345005 RIMS2Q9UQ26 1411 aa17.43■□□□□ 0.38
CLK3-201ENST00000345005 C3P01024 1663 aa17.43■□□□□ 0.38
CLK3-201ENST00000345005 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.42■□□□□ 0.38
CLK3-201ENST00000345005 UBR1Q8IWV7 1749 aa17.41■□□□□ 0.38
CLK3-201ENST00000345005 PER1O15534 1290 aaPredicted RBP17.41■□□□□ 0.38
CLK3-201ENST00000345005 HDGFP51858 240 aaKnown RBP17.41■□□□□ 0.38
CLK3-201ENST00000345005 RALBP1Q15311 655 aa17.41■□□□□ 0.38
CLK3-201ENST00000345005 PANK3Q9H999 370 aa17.41■□□□□ 0.38
CLK3-201ENST00000345005 ALKQ9UM73 1620 aa17.41■□□□□ 0.38
CLK3-201ENST00000345005 MYOM1P52179 1685 aa17.41■□□□□ 0.38
CLK3-201ENST00000345005 ADAMTSL3P82987 1691 aa17.39■□□□□ 0.37
CLK3-201ENST00000345005 MRS2Q9HD23 443 aa17.39■□□□□ 0.37
CLK3-201ENST00000345005 NLRP1Q9C000 1473 aa17.39■□□□□ 0.37
CLK3-201ENST00000345005 FKBP8Q14318 412 aa17.38■□□□□ 0.37
CLK3-201ENST00000345005 ASXL1Q8IXJ9 1541 aa17.38■□□□□ 0.37
CLK3-201ENST00000345005 CCDC184Q52MB2 194 aa17.37■□□□□ 0.37
CLK3-201ENST00000345005 SETD1AO15047 1707 aaKnown RBP17.36■□□□□ 0.37
CLK3-201ENST00000345005 CNGB1Q14028 1251 aaPredicted RBP17.35■□□□□ 0.37
CLK3-201ENST00000345005 YTHDC2Q9H6S0 1430 aaKnown RBP17.35■□□□□ 0.37
CLK3-201ENST00000345005 MYBBP1AQ9BQG0 1328 aaKnown RBP17.34■□□□□ 0.37
CLK3-201ENST00000345005 CEBPAP49715 358 aaPredicted RBP17.34■□□□□ 0.37
CLK3-201ENST00000345005 PUS7Q96PZ0 661 aaKnown RBP17.34■□□□□ 0.37
CLK3-201ENST00000345005 PARD3Q8TEW0 1356 aa17.34■□□□□ 0.37
CLK3-201ENST00000345005 KNSTRNQ9Y448 316 aa17.33■□□□□ 0.37
CLK3-201ENST00000345005 TMEM2Q9UHN6 1383 aa17.33■□□□□ 0.36
CLK3-201ENST00000345005 STK26Q9P289 416 aa17.33■□□□□ 0.36
CLK3-201ENST00000345005 PTPRMP28827 1452 aa17.32■□□□□ 0.36
CLK3-201ENST00000345005 ERICH6BQ5W0A0 696 aa17.32■□□□□ 0.36
CLK3-201ENST00000345005 EVC2Q86UK5 1308 aa17.32■□□□□ 0.36
CLK3-201ENST00000345005 NRXN3Q9Y4C0 1643 aa17.32■□□□□ 0.36
CLK3-201ENST00000345005 SENP3Q9H4L4 574 aaPredicted RBP17.31■□□□□ 0.36
CLK3-201ENST00000345005 BRD4O60885 1362 aaPredicted RBP17.31■□□□□ 0.36
CLK3-201ENST00000345005 FAM9BQ8IZU0 186 aa17.3■□□□□ 0.36
CLK3-201ENST00000345005 TMC1Q8TDI8 760 aa17.3■□□□□ 0.36
CLK3-201ENST00000345005 DLC1Q96QB1 1528 aa17.3■□□□□ 0.36
CLK3-201ENST00000345005 RIMS1Q86UR5 1692 aaKnown RBP17.29■□□□□ 0.36
CLK3-201ENST00000345005 CC2D1BQ5T0F9 858 aaKnown RBP17.28■□□□□ 0.36
CLK3-201ENST00000345005 POGKQ9P215 609 aa17.28■□□□□ 0.36
CLK3-201ENST00000345005 LRPPRCP42704 1394 aaKnown RBP17.28■□□□□ 0.36
CLK3-201ENST00000345005 NPC1L1Q9UHC9 1359 aa17.28■□□□□ 0.36
CLK3-201ENST00000345005 NLRP13Q86W25 1043 aa17.28■□□□□ 0.36
CLK3-201ENST00000345005 TULP4Q9NRJ4 1543 aa17.27■□□□□ 0.36
CLK3-201ENST00000345005 HNRNPUQ00839 825 aaKnown RBP eCLIP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms