RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 GOLGA6L3A6NEY3 463 aa9□□□□□ -0.97
VCAN-202ENST00000342785 NGDNQ8NEJ9 315 aaKnown RBP9□□□□□ -0.97
VCAN-202ENST00000342785 FOXD4L1Q9NU39 408 aa9□□□□□ -0.97
VCAN-202ENST00000342785 NCOA1Q15788 1441 aa8.99□□□□□ -0.97
VCAN-202ENST00000342785 COG3Q96JB2 828 aa8.99□□□□□ -0.97
VCAN-202ENST00000342785 BACH2Q9BYV9 841 aa8.99□□□□□ -0.97
VCAN-202ENST00000342785 OSCARQ8IYS5 282 aa8.99□□□□□ -0.97
VCAN-202ENST00000342785 SNAPC4Q5SXM2 1469 aa8.99□□□□□ -0.97
VCAN-202ENST00000342785 PRDM2Q13029 1718 aa8.99□□□□□ -0.97
VCAN-202ENST00000342785 CABP2Q9NPB3 220 aa8.98□□□□□ -0.97
VCAN-202ENST00000342785 AMPHP49418 695 aa8.98□□□□□ -0.97
VCAN-202ENST00000342785 BCAR3O75815 825 aa8.98□□□□□ -0.97
VCAN-202ENST00000342785 ZRSR1Q15695 479 aaKnown RBP8.98□□□□□ -0.97
VCAN-202ENST00000342785 CYB5RLQ6IPT4 315 aa8.98□□□□□ -0.97
VCAN-202ENST00000342785 KIAA1211Q6ZU35 1233 aa8.98□□□□□ -0.97
VCAN-202ENST00000342785 MAPKBP1O60336 1514 aa8.98□□□□□ -0.97
VCAN-202ENST00000342785 HECW1Q76N89 1606 aa8.97□□□□□ -0.97
VCAN-202ENST00000342785 ARHGAP5Q13017 1502 aa8.97□□□□□ -0.97
VCAN-202ENST00000342785 GOLGA6L4A6NEF3 574 aa8.97□□□□□ -0.97
VCAN-202ENST00000342785 AAMPQ13685 434 aa8.97□□□□□ -0.97
VCAN-202ENST00000342785 PDE3AQ14432 1141 aa8.97□□□□□ -0.97
VCAN-202ENST00000342785 NFKBIBQ15653 356 aa8.97□□□□□ -0.97
VCAN-202ENST00000342785 LTV1Q96GA3 475 aaPredicted RBP8.96□□□□□ -0.97
VCAN-202ENST00000342785 CHMP4AQ9BY43 222 aa8.96□□□□□ -0.97
VCAN-202ENST00000342785 EID1Q9Y6B2 187 aa8.96□□□□□ -0.97
VCAN-202ENST00000342785 RPRD2Q5VT52 1461 aaKnown RBP8.96□□□□□ -0.97
VCAN-202ENST00000342785 PLB1Q6P1J6 1458 aa8.96□□□□□ -0.98
VCAN-202ENST00000342785 TRIM6-TRIM34B2RNG4 842 aa8.96□□□□□ -0.98
VCAN-202ENST00000342785 PTMSP20962 102 aa8.96□□□□□ -0.98
VCAN-202ENST00000342785 LNPKQ9C0E8 428 aa8.96□□□□□ -0.98
VCAN-202ENST00000342785 MSNP26038 577 aaKnown RBP8.95□□□□□ -0.98
VCAN-202ENST00000342785 SUPT6HQ7KZ85 1726 aaKnown RBP8.95□□□□□ -0.98
VCAN-202ENST00000342785 API5Q9BZZ5 524 aaKnown RBP8.95□□□□□ -0.98
VCAN-202ENST00000342785 ERBINQ96RT1 1412 aa8.95□□□□□ -0.98
VCAN-202ENST00000342785 SCAPERQ9BY12 1400 aa8.95□□□□□ -0.98
VCAN-202ENST00000342785 MSH5O43196 834 aa8.95□□□□□ -0.98
VCAN-202ENST00000342785 KIF16BQ96L93 1317 aa8.95□□□□□ -0.98
VCAN-202ENST00000342785 HMOX1P09601 288 aa8.95□□□□□ -0.98
VCAN-202ENST00000342785 TRHP20396 242 aaPredicted RBP8.95□□□□□ -0.98
VCAN-202ENST00000342785 NAP1L2Q9ULW6 460 aaPredicted RBP8.94□□□□□ -0.98
VCAN-202ENST00000342785 EXOSC9Q06265 439 aaKnown RBP8.94□□□□□ -0.98
VCAN-202ENST00000342785 BIVM-ERCC5R4GMW8 1640 aa8.94□□□□□ -0.98
VCAN-202ENST00000342785 URB2Q14146 1524 aaKnown RBP8.94□□□□□ -0.98
VCAN-202ENST00000342785 GNAI1P63096 354 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 NOL8Q76FK4 1167 aaKnown RBP8.93□□□□□ -0.98
VCAN-202ENST00000342785 IQGAP2Q13576 1575 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 ST18O60284 1047 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 CHMP5Q9NZZ3 219 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 TAOK2Q9UL54 1235 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 PLEKHH2Q8IVE3 1493 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 DDX11L8A8MPP1 907 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 C22orf23Q9BZE7 217 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.93□□□□□ -0.98
VCAN-202ENST00000342785 ARHGEF11O15085 1522 aa8.93□□□□□ -0.98
VCAN-202ENST00000342785 PDZRN3Q9UPQ7 1066 aa8.92□□□□□ -0.98
VCAN-202ENST00000342785 PTPN23Q9H3S7 1636 aa8.92□□□□□ -0.98
VCAN-202ENST00000342785 MAGI1Q96QZ7 1491 aaPredicted RBP8.92□□□□□ -0.98
VCAN-202ENST00000342785 SLFN5Q08AF3 891 aa8.92□□□□□ -0.98
VCAN-202ENST00000342785 TSR2Q969E8 191 aaKnown RBP8.92□□□□□ -0.98
VCAN-202ENST00000342785 DDX49Q9Y6V7 483 aaKnown RBP8.92□□□□□ -0.98
VCAN-202ENST00000342785 CAMSAP2Q08AD1 1489 aa8.92□□□□□ -0.98
VCAN-202ENST00000342785 HDAC5Q9UQL6 1122 aa8.92□□□□□ -0.98
VCAN-202ENST00000342785 C20orf194Q5TEA3 1177 aa8.91□□□□□ -0.98
VCAN-202ENST00000342785 PRKAR2BP31323 418 aa8.91□□□□□ -0.98
VCAN-202ENST00000342785 SKAP1Q86WV1 359 aa8.91□□□□□ -0.98
VCAN-202ENST00000342785 FRAT2O75474 233 aaPredicted RBP8.9□□□□□ -0.98
VCAN-202ENST00000342785 CSB-PGBD3P0DP91 1061 aa8.9□□□□□ -0.98
VCAN-202ENST00000342785 FOXD4L5Q5VV16 416 aaPredicted RBP8.9□□□□□ -0.98
VCAN-202ENST00000342785 FOXD4L4Q8WXT5 416 aaPredicted RBP8.9□□□□□ -0.98
VCAN-202ENST00000342785 PRAM1Q96QH2 718 aa8.9□□□□□ -0.98
VCAN-202ENST00000342785 CCDC141Q6ZP82 1450 aa8.9□□□□□ -0.98
VCAN-202ENST00000342785 RILPL2Q969X0 211 aa8.9□□□□□ -0.99
VCAN-202ENST00000342785 WWC1Q8IX03 1113 aa8.89□□□□□ -0.99
VCAN-202ENST00000342785 FAM69CQ0P6D2 419 aa8.89□□□□□ -0.99
VCAN-202ENST00000342785 WDR63Q8IWG1 891 aa8.89□□□□□ -0.99
VCAN-202ENST00000342785 SYAP1Q96A49 352 aaPredicted RBP8.89□□□□□ -0.99
VCAN-202ENST00000342785 LAMC3Q9Y6N6 1575 aa8.89□□□□□ -0.99
VCAN-202ENST00000342785 REC8O95072 547 aa8.89□□□□□ -0.99
VCAN-202ENST00000342785 GRIN2AQ12879 1464 aa8.89□□□□□ -0.99
VCAN-202ENST00000342785 CUL7Q14999 1698 aa8.89□□□□□ -0.99
VCAN-202ENST00000342785 ZNF608Q9ULD9 1512 aaPredicted RBP8.89□□□□□ -0.99
VCAN-202ENST00000342785 RAPGEF3O95398 923 aa8.88□□□□□ -0.99
VCAN-202ENST00000342785 SLC52A1Q9NWF4 448 aa8.88□□□□□ -0.99
VCAN-202ENST00000342785 CABP1Q9NZU7 370 aa8.88□□□□□ -0.99
VCAN-202ENST00000342785 SKOR2Q2VWA4 1001 aaPredicted RBP8.88□□□□□ -0.99
VCAN-202ENST00000342785 FKBP5Q13451 457 aaPredicted RBP8.88□□□□□ -0.99
VCAN-202ENST00000342785 TEFQ10587 303 aa8.87□□□□□ -0.99
VCAN-202ENST00000342785 NECTIN2Q92692 538 aa8.87□□□□□ -0.99
VCAN-202ENST00000342785 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.87□□□□□ -0.99
VCAN-202ENST00000342785 ZNF330Q9Y3S2 320 aaPredicted RBP8.87□□□□□ -0.99
VCAN-202ENST00000342785 GPATCH8Q9UKJ3 1502 aaKnown RBP8.87□□□□□ -0.99
VCAN-202ENST00000342785 KIAA2012Q0VF49 1180 aa8.87□□□□□ -0.99
VCAN-202ENST00000342785 ATF7IPQ6VMQ6 1270 aa8.87□□□□□ -0.99
VCAN-202ENST00000342785 GPATCH3Q96I76 525 aa8.86□□□□□ -0.99
VCAN-202ENST00000342785 EIF2S2P20042 333 aaKnown RBP8.86□□□□□ -0.99
VCAN-202ENST00000342785 DUSP27Q5VZP5 1158 aa8.86□□□□□ -0.99
VCAN-202ENST00000342785 MVPQ14764 893 aaKnown RBP8.86□□□□□ -0.99
VCAN-202ENST00000342785 NOB1Q9ULX3 412 aaKnown RBP8.86□□□□□ -0.99
VCAN-202ENST00000342785 ADGRF5Q8IZF2 1346 aa8.86□□□□□ -0.99
VCAN-202ENST00000342785 NRDCO43847 1150 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 197.8 ms