RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ROCK1Q13464 1354 aa4.44□□□□□ -1.7
SYNE1-201ENST00000341594 SPC24Q8NBT2 197 aa4.44□□□□□ -1.7
SYNE1-201ENST00000341594 MYH7BA7E2Y1 1941 aa4.44□□□□□ -1.7
SYNE1-201ENST00000341594 ADGBQ8N7X0 1667 aa4.44□□□□□ -1.7
SYNE1-201ENST00000341594 ZBED9Q6R2W3 1325 aa4.44□□□□□ -1.7
SYNE1-201ENST00000341594 UPF2Q9HAU5 1272 aaKnown RBP4.44□□□□□ -1.7
SYNE1-201ENST00000341594 WDR97A6NE52 1622 aa4.44□□□□□ -1.7
SYNE1-201ENST00000341594 GPATCH11Q8N954 259 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 GOLGA6L22H0YM25 854 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 DNAJC2Q99543 621 aaKnown RBP4.43□□□□□ -1.7
SYNE1-201ENST00000341594 MYH14Q7Z406 1995 aaKnown RBP4.43□□□□□ -1.7
SYNE1-201ENST00000341594 CITO14578 2027 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-201ENST00000341594 GPIHBP1Q8IV16 184 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 RSPH4AQ5TD94 716 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 SETD5Q9C0A6 1442 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 FBLN1P23142 703 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 TTLL5Q6EMB2 1281 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 HECW1Q76N89 1606 aa4.43□□□□□ -1.7
SYNE1-201ENST00000341594 POLA1P09884 1462 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-201ENST00000341594 EVPLQ92817 2033 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 CSPP1Q1MSJ5 1256 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 CASZ1Q86V15 1759 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 TPM2P07951 284 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 FKBP15Q5T1M5 1219 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 EIF3AQ14152 1382 aaKnown RBP4.42□□□□□ -1.7
SYNE1-201ENST00000341594 TUBB4BP68371 445 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 KIAA1210Q9ULL0 1709 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 NINLQ9Y2I6 1382 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 VGFO15240 615 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-201ENST00000341594 NFKBIBQ15653 356 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 STK26Q9P289 416 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 MIA2Q96PC5 1412 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 TSPYL1Q9H0U9 437 aa4.42□□□□□ -1.7
SYNE1-201ENST00000341594 RBM27Q9P2N5 1060 aaKnown RBP4.42□□□□□ -1.7
SYNE1-201ENST00000341594 HSP90AB1P08238 724 aaKnown RBP4.42□□□□□ -1.7
SYNE1-201ENST00000341594 HMGN5P82970 282 aaKnown RBP4.41□□□□□ -1.7
SYNE1-201ENST00000341594 PDCL3Q9H2J4 239 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 KIF27Q86VH2 1401 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 CAVIN1Q6NZI2 390 aaKnown RBP4.41□□□□□ -1.7
SYNE1-201ENST00000341594 LAMC1P11047 1609 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 KIF1BO60333 1816 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 ISM2Q6H9L7 571 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 SHROOM3Q8TF72 1996 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 POLR3GO15318 223 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-201ENST00000341594 PDCL2Q8N4E4 241 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 PANK1Q8TE04 598 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 CNKSR2Q8WXI2 1034 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 FYB1O15117 783 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 MYO18AQ92614 2054 aaKnown RBP4.41□□□□□ -1.7
SYNE1-201ENST00000341594 YEATS2Q9ULM3 1422 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 WDR43Q15061 677 aaKnown RBP eCLIP4.41□□□□□ -1.7
SYNE1-201ENST00000341594 LRRIQ1Q96JM4 1722 aa4.41□□□□□ -1.7
SYNE1-201ENST00000341594 DHX29Q7Z478 1369 aaKnown RBP4.4□□□□□ -1.7
SYNE1-201ENST00000341594 CNTLNQ9NXG0 1405 aa4.4□□□□□ -1.7
SYNE1-201ENST00000341594 KIF16BQ96L93 1317 aa4.4□□□□□ -1.7
SYNE1-201ENST00000341594 CHD2O14647 1828 aaKnown RBP4.4□□□□□ -1.7
SYNE1-201ENST00000341594 POGKQ9P215 609 aa4.4□□□□□ -1.7
SYNE1-201ENST00000341594 RRAGDQ9NQL2 400 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-201ENST00000341594 AGRPO00253 132 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 LMOD2Q6P5Q4 547 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 KCNJ4P48050 445 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 GSE1Q14687 1217 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 TTC16Q8NEE8 873 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 NESP48681 1621 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 RALBP1Q15311 655 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 C20orf194Q5TEA3 1177 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 CEBPZQ03701 1054 aaKnown RBP4.4□□□□□ -1.71
SYNE1-201ENST00000341594 UIMC1Q96RL1 719 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 GOLGA6L6A8MZA4 724 aa4.4□□□□□ -1.71
SYNE1-201ENST00000341594 LOXHD1Q8IVV2 1947 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 MAP2P11137 1827 aaKnown RBP4.39□□□□□ -1.71
SYNE1-201ENST00000341594 CCDC27Q2M243 656 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 CEP152O94986 1710 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 ATAD2Q6PL18 1390 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 DCAF11Q8TEB1 546 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 MIS18AQ9NYP9 233 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 UACAQ9BZF9 1416 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 PROSER2Q86WR7 435 aaPredicted RBP4.39□□□□□ -1.71
SYNE1-201ENST00000341594 CDCA8Q53HL2 280 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 FMN1Q68DA7 1419 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 HSPA5P11021 654 aaKnown RBP4.39□□□□□ -1.71
SYNE1-201ENST00000341594 CAMSAP2Q08AD1 1489 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 RNF123Q5XPI4 1314 aa4.39□□□□□ -1.71
SYNE1-201ENST00000341594 CHAF1AQ13111 956 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-201ENST00000341594 TOMM22Q9NS69 142 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 PRPF38AQ8NAV1 312 aaKnown RBP4.38□□□□□ -1.71
SYNE1-201ENST00000341594 MAPK8IP3Q9UPT6 1336 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 KIF20BQ96Q89 1820 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 U2SURPO15042 1029 aaKnown RBP4.38□□□□□ -1.71
SYNE1-201ENST00000341594 KAT6AQ92794 2004 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 FYCO1Q9BQS8 1478 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 GON4LQ3T8J9 2241 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 RYDENQ9NUL5 291 aaKnown RBP4.38□□□□□ -1.71
SYNE1-201ENST00000341594 FAM177A1Q8N128 213 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-201ENST00000341594 TUBB4AP04350 444 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 IGBP1P78318 339 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 TIAM1Q13009 1591 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 GOLGA6L1Q8N7Z2 621 aa4.38□□□□□ -1.71
SYNE1-201ENST00000341594 CTR9Q6PD62 1173 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms