RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 SYNMO15061 1565 aa20.59■□□□□ 0.89
TPM3-208ENST00000341485 ADGRB3O60242 1522 aa20.59■□□□□ 0.89
TPM3-208ENST00000341485 PREX1Q8TCU6 1659 aa20.58■□□□□ 0.89
TPM3-208ENST00000341485 ESF1Q9H501 851 aaKnown RBP20.58■□□□□ 0.88
TPM3-208ENST00000341485 MADDQ8WXG6 1647 aa20.58■□□□□ 0.88
TPM3-208ENST00000341485 FAM9BQ8IZU0 186 aa20.56■□□□□ 0.88
TPM3-208ENST00000341485 POLR3GLQ9BT43 218 aa20.56■□□□□ 0.88
TPM3-208ENST00000341485 PIK3C2BO00750 1634 aa20.56■□□□□ 0.88
TPM3-208ENST00000341485 TSHZ2Q9NRE2 1034 aa20.55■□□□□ 0.88
TPM3-208ENST00000341485 NBPF1Q3BBV0 1214 aa20.54■□□□□ 0.88
TPM3-208ENST00000341485 IFT172Q9UG01 1749 aa20.54■□□□□ 0.88
TPM3-208ENST00000341485 SLC52A1Q9NWF4 448 aa20.54■□□□□ 0.88
TPM3-208ENST00000341485 MYOM2P54296 1465 aa20.53■□□□□ 0.88
TPM3-208ENST00000341485 LAMC1P11047 1609 aa20.53■□□□□ 0.88
TPM3-208ENST00000341485 GPRASP1Q5JY77 1395 aa20.53■□□□□ 0.88
TPM3-208ENST00000341485 ERVK-7P63135 1459 aa20.52■□□□□ 0.88
TPM3-208ENST00000341485 ST20-MTHFSA0A0A6YYL1 179 aa20.52■□□□□ 0.87
TPM3-208ENST00000341485 FBXO31Q5XUX0 539 aaPredicted RBP20.51■□□□□ 0.87
TPM3-208ENST00000341485 IDI1Q13907 227 aa20.5■□□□□ 0.87
TPM3-208ENST00000341485 RPGRIP1LQ68CZ1 1315 aa20.49■□□□□ 0.87
TPM3-208ENST00000341485 PPLO60437 1756 aa20.48■□□□□ 0.87
TPM3-208ENST00000341485 ZBED9Q6R2W3 1325 aa20.48■□□□□ 0.87
TPM3-208ENST00000341485 ADGRF5Q8IZF2 1346 aa20.48■□□□□ 0.87
TPM3-208ENST00000341485 KIAA1210Q9ULL0 1709 aa20.46■□□□□ 0.87
TPM3-208ENST00000341485 ZMYM3Q14202 1370 aa20.46■□□□□ 0.87
TPM3-208ENST00000341485 SPATA31D1Q6ZQQ2 1576 aa20.46■□□□□ 0.87
TPM3-208ENST00000341485 CNGB1Q14028 1251 aaPredicted RBP20.45■□□□□ 0.86
TPM3-208ENST00000341485 NRXN1Q9ULB1 1477 aa20.44■□□□□ 0.86
TPM3-208ENST00000341485 STAG3Q9UJ98 1225 aa20.43■□□□□ 0.86
TPM3-208ENST00000341485 TMEM131LA2VDJ0 1609 aa20.43■□□□□ 0.86
TPM3-208ENST00000341485 CFAP70Q5T0N1 1121 aa20.42■□□□□ 0.86
TPM3-208ENST00000341485 MYO5BQ9ULV0 1848 aa20.42■□□□□ 0.86
TPM3-208ENST00000341485 NEXMIFQ5QGS0 1516 aa20.42■□□□□ 0.86
TPM3-208ENST00000341485 IQGAP1P46940 1657 aa20.4■□□□□ 0.86
TPM3-208ENST00000341485 VGFO15240 615 aaPredicted RBP20.4■□□□□ 0.86
TPM3-208ENST00000341485 IRX6P78412 446 aaPredicted RBP20.39■□□□□ 0.86
TPM3-208ENST00000341485 SCAF11Q99590 1463 aaKnown RBP20.39■□□□□ 0.85
TPM3-208ENST00000341485 PIK3C2GO75747 1445 aa20.39■□□□□ 0.85
TPM3-208ENST00000341485 NUTM2DQ5VT03 806 aaPredicted RBP20.38■□□□□ 0.85
TPM3-208ENST00000341485 EIF3AQ14152 1382 aaKnown RBP20.36■□□□□ 0.85
TPM3-208ENST00000341485 FER1L4A9Z1Z3 1794 aa20.36■□□□□ 0.85
TPM3-208ENST00000341485 TNRQ92752 1358 aa20.35■□□□□ 0.85
TPM3-208ENST00000341485 SETBP1Q9Y6X0 1596 aa20.34■□□□□ 0.85
TPM3-208ENST00000341485 PNISRQ8TF01 805 aaKnown RBP20.34■□□□□ 0.85
TPM3-208ENST00000341485 C14orf93Q9H972 538 aaKnown RBP20.34■□□□□ 0.85
TPM3-208ENST00000341485 KTN1Q86UP2 1357 aaKnown RBP20.34■□□□□ 0.85
TPM3-208ENST00000341485 ZFYVE9O95405 1425 aa20.33■□□□□ 0.85
TPM3-208ENST00000341485 TESK2Q96S53 571 aa20.32■□□□□ 0.84
TPM3-208ENST00000341485 A2ML1A8K2U0 1454 aa20.32■□□□□ 0.84
TPM3-208ENST00000341485 MYBBP1AQ9BQG0 1328 aaKnown RBP20.32■□□□□ 0.84
TPM3-208ENST00000341485 TMF1P82094 1093 aa20.31■□□□□ 0.84
TPM3-208ENST00000341485 RALBP1Q15311 655 aa20.31■□□□□ 0.84
TPM3-208ENST00000341485 ERICH6BQ5W0A0 696 aa20.31■□□□□ 0.84
TPM3-208ENST00000341485 AEBP2Q6ZN18 517 aaPredicted RBP20.31■□□□□ 0.84
TPM3-208ENST00000341485 TMC1Q8TDI8 760 aa20.31■□□□□ 0.84
TPM3-208ENST00000341485 BRD4O60885 1362 aaPredicted RBP20.31■□□□□ 0.84
TPM3-208ENST00000341485 DISP3Q9P2K9 1392 aa20.31■□□□□ 0.84
TPM3-208ENST00000341485 SMG6Q86US8 1419 aaKnown RBP20.3■□□□□ 0.84
TPM3-208ENST00000341485 C3P01024 1663 aa20.29■□□□□ 0.84
TPM3-208ENST00000341485 CEBPAP49715 358 aaPredicted RBP20.28■□□□□ 0.84
TPM3-208ENST00000341485 LRPPRCP42704 1394 aaKnown RBP20.28■□□□□ 0.84
TPM3-208ENST00000341485 PLPPR3Q6T4P5 718 aa20.28■□□□□ 0.84
TPM3-208ENST00000341485 RIMS2Q9UQ26 1411 aa20.27■□□□□ 0.84
TPM3-208ENST00000341485 ADGRB1O14514 1584 aa20.26■□□□□ 0.83
TPM3-208ENST00000341485 TMEM132EQ6IEE7 984 aa20.26■□□□□ 0.83
TPM3-208ENST00000341485 PARD3Q8TEW0 1356 aa20.26■□□□□ 0.83
TPM3-208ENST00000341485 PER1O15534 1290 aaPredicted RBP20.26■□□□□ 0.83
TPM3-208ENST00000341485 SENP3Q9H4L4 574 aaPredicted RBP20.26■□□□□ 0.83
TPM3-208ENST00000341485 PPP4R2Q9NY27 417 aa20.25■□□□□ 0.83
TPM3-208ENST00000341485 TRAK1Q9UPV9 953 aa20.24■□□□□ 0.83
TPM3-208ENST00000341485 NUDCQ9Y266 331 aa20.23■□□□□ 0.83
TPM3-208ENST00000341485 NLRP1Q9C000 1473 aa20.23■□□□□ 0.83
TPM3-208ENST00000341485 KDM5AP29375 1690 aaKnown RBP20.23■□□□□ 0.83
TPM3-208ENST00000341485 SLC24A1O60721 1099 aa20.23■□□□□ 0.83
TPM3-208ENST00000341485 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.23■□□□□ 0.83
TPM3-208ENST00000341485 CDCA8Q53HL2 280 aa20.22■□□□□ 0.83
TPM3-208ENST00000341485 MYO3AQ8NEV4 1616 aa20.22■□□□□ 0.83
TPM3-208ENST00000341485 UBR1Q8IWV7 1749 aa20.22■□□□□ 0.83
TPM3-208ENST00000341485 HDGFP51858 240 aaKnown RBP20.22■□□□□ 0.83
TPM3-208ENST00000341485 CENPJQ9HC77 1338 aaPredicted RBP20.21■□□□□ 0.83
TPM3-208ENST00000341485 RIMS1Q86UR5 1692 aaKnown RBP20.2■□□□□ 0.82
TPM3-208ENST00000341485 SENP3-EIF4A1A0A087X0R7 540 aa20.2■□□□□ 0.82
TPM3-208ENST00000341485 NLRP13Q86W25 1043 aa20.2■□□□□ 0.82
TPM3-208ENST00000341485 ALKQ9UM73 1620 aa20.19■□□□□ 0.82
TPM3-208ENST00000341485 RBM19Q9Y4C8 960 aaKnown RBP20.18■□□□□ 0.82
TPM3-208ENST00000341485 PANK3Q9H999 370 aa20.18■□□□□ 0.82
TPM3-208ENST00000341485 ASXL1Q8IXJ9 1541 aa20.17■□□□□ 0.82
TPM3-208ENST00000341485 QRICH2Q9H0J4 1663 aa20.17■□□□□ 0.82
TPM3-208ENST00000341485 TMEM2Q9UHN6 1383 aa20.16■□□□□ 0.82
TPM3-208ENST00000341485 RNF123Q5XPI4 1314 aa20.16■□□□□ 0.82
TPM3-208ENST00000341485 ARHGEF28Q8N1W1 1705 aaKnown RBP20.16■□□□□ 0.82
TPM3-208ENST00000341485 SBNO2Q9Y2G9 1366 aa20.15■□□□□ 0.82
TPM3-208ENST00000341485 STK26Q9P289 416 aa20.15■□□□□ 0.82
TPM3-208ENST00000341485 ADAMTSL3P82987 1691 aa20.14■□□□□ 0.82
TPM3-208ENST00000341485 CC2D1BQ5T0F9 858 aaKnown RBP20.14■□□□□ 0.81
TPM3-208ENST00000341485 YTHDC2Q9H6S0 1430 aaKnown RBP20.13■□□□□ 0.81
TPM3-208ENST00000341485 B4GALNT3Q6L9W6 998 aa20.11■□□□□ 0.81
TPM3-208ENST00000341485 NRXN3Q9Y4C0 1643 aa20.1■□□□□ 0.81
TPM3-208ENST00000341485 PTPRMP28827 1452 aa20.09■□□□□ 0.81
TPM3-208ENST00000341485 SETD1AO15047 1707 aaKnown RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms