RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 IQGAP3Q86VI3 1631 aa30.35■■■□□ 2.45
SYNE2-201ENST00000341472 GCC2Q8IWJ2 1684 aa30.31■■■□□ 2.44
SYNE2-201ENST00000341472 NUTM2DQ5VT03 806 aaPredicted RBP30.31■■■□□ 2.44
SYNE2-201ENST00000341472 ZFYVE9O95405 1425 aa30.3■■■□□ 2.44
SYNE2-201ENST00000341472 PROSER2Q86WR7 435 aaPredicted RBP30.3■■■□□ 2.44
SYNE2-201ENST00000341472 PLEKHG1Q9ULL1 1385 aa30.29■■■□□ 2.44
SYNE2-201ENST00000341472 E9PCH4 1651 aa30.28■■■□□ 2.44
SYNE2-201ENST00000341472 HSPA1LP34931 641 aa30.28■■■□□ 2.44
SYNE2-201ENST00000341472 TBX22Q9Y458 520 aa30.28■■■□□ 2.44
SYNE2-201ENST00000341472 HFM1A2PYH4 1435 aa30.28■■■□□ 2.44
SYNE2-201ENST00000341472 TMEM131LA2VDJ0 1609 aa30.24■■■□□ 2.43
SYNE2-201ENST00000341472 SLC4A1APQ9BWU0 796 aaKnown RBP30.23■■■□□ 2.43
SYNE2-201ENST00000341472 DISP3Q9P2K9 1392 aa30.23■■■□□ 2.43
SYNE2-201ENST00000341472 ZNF326Q5BKZ1 582 aaKnown RBP30.22■■■□□ 2.43
SYNE2-201ENST00000341472 TMEM94Q12767 1356 aa30.22■■■□□ 2.43
SYNE2-201ENST00000341472 STRCP1A6NGW2 1772 aa30.22■■■□□ 2.43
SYNE2-201ENST00000341472 RBM33Q96EV2 1170 aaKnown RBP30.21■■■□□ 2.43
SYNE2-201ENST00000341472 ADAMTS13Q76LX8 1427 aa30.11■■■□□ 2.41
SYNE2-201ENST00000341472 ALKQ9UM73 1620 aa30.11■■■□□ 2.41
SYNE2-201ENST00000341472 NKTRP30414 1462 aaKnown RBP30.07■■■□□ 2.4
SYNE2-201ENST00000341472 PIK3R4Q99570 1358 aa30.07■■■□□ 2.4
SYNE2-201ENST00000341472 MYO5BQ9ULV0 1848 aa30.06■■■□□ 2.4
SYNE2-201ENST00000341472 MPHOSPH9Q99550 1183 aa30.06■■■□□ 2.4
SYNE2-201ENST00000341472 AMOTL2Q9Y2J4 779 aa30.06■■■□□ 2.4
SYNE2-201ENST00000341472 FOXD1Q16676 465 aa30.05■■■□□ 2.4
SYNE2-201ENST00000341472 MSH6P52701 1360 aa30.04■■■□□ 2.4
SYNE2-201ENST00000341472 C14orf37Q86TY3 774 aa30.04■■■□□ 2.4
SYNE2-201ENST00000341472 ACIN1Q9UKV3 1341 aaKnown RBP30.03■■■□□ 2.4
SYNE2-201ENST00000341472 TRPM2O94759 1503 aa30.02■■■□□ 2.4
SYNE2-201ENST00000341472 FAM135BQ49AJ0 1406 aa30.02■■■□□ 2.4
SYNE2-201ENST00000341472 VGFO15240 615 aaPredicted RBP30.01■■■□□ 2.39
SYNE2-201ENST00000341472 SLAIN2Q9P270 581 aa30.01■■■□□ 2.39
SYNE2-201ENST00000341472 SPHKAPQ2M3C7 1700 aa30.01■■■□□ 2.39
SYNE2-201ENST00000341472 NWD1Q149M9 1564 aa30■■■□□ 2.39
SYNE2-201ENST00000341472 RPGRIP1LQ68CZ1 1315 aa29.99■■■□□ 2.39
SYNE2-201ENST00000341472 ILDR2Q71H61 639 aa29.99■■■□□ 2.39
SYNE2-201ENST00000341472 NCOA3Q9Y6Q9 1424 aa29.97■■■□□ 2.39
SYNE2-201ENST00000341472 C19orf44Q9H6X5 657 aa29.97■■■□□ 2.39
SYNE2-201ENST00000341472 CLTCL1P53675 1640 aa29.96■■■□□ 2.39
SYNE2-201ENST00000341472 SETD5Q9C0A6 1442 aa29.96■■■□□ 2.39
SYNE2-201ENST00000341472 DIP2AQ14689 1571 aa29.94■■■□□ 2.38
SYNE2-201ENST00000341472 PTPRUQ92729 1446 aa29.94■■■□□ 2.38
SYNE2-201ENST00000341472 ATF3P18847 181 aa29.93■■■□□ 2.38
SYNE2-201ENST00000341472 METP08581 1390 aa29.92■■■□□ 2.38
SYNE2-201ENST00000341472 XIRP1Q702N8 1843 aaKnown RBP29.92■■■□□ 2.38
SYNE2-201ENST00000341472 CADPS2Q86UW7 1296 aa29.92■■■□□ 2.38
SYNE2-201ENST00000341472 CHD2O14647 1828 aaKnown RBP29.91■■■□□ 2.38
SYNE2-201ENST00000341472 RGL3Q3MIN7 710 aa29.89■■■□□ 2.38
SYNE2-201ENST00000341472 SETBP1Q9Y6X0 1596 aa29.88■■■□□ 2.37
SYNE2-201ENST00000341472 CCDC144AA2RUR9 1427 aa29.87■■■□□ 2.37
SYNE2-201ENST00000341472 NEXMIFQ5QGS0 1516 aa29.86■■■□□ 2.37
SYNE2-201ENST00000341472 PHF23Q9BUL5 403 aaPredicted RBP29.83■■■□□ 2.37
SYNE2-201ENST00000341472 RAB3GAP2Q9H2M9 1393 aa29.82■■■□□ 2.36
SYNE2-201ENST00000341472 NRXN3Q9Y4C0 1643 aa29.79■■■□□ 2.36
SYNE2-201ENST00000341472 KIF1BO60333 1816 aa29.79■■■□□ 2.36
SYNE2-201ENST00000341472 SOCS7O14512 581 aa29.77■■■□□ 2.36
SYNE2-201ENST00000341472 ADGRF5Q8IZF2 1346 aa29.76■■■□□ 2.36
SYNE2-201ENST00000341472 MED1Q15648 1581 aaPredicted RBP29.76■■■□□ 2.35
SYNE2-201ENST00000341472 HRCP23327 699 aa29.75■■■□□ 2.35
SYNE2-201ENST00000341472 SPATA31E1Q6ZUB1 1445 aa29.74■■■□□ 2.35
SYNE2-201ENST00000341472 ANKRD30BQ9BXX2 1392 aa29.74■■■□□ 2.35
SYNE2-201ENST00000341472 ROBO1Q9Y6N7 1651 aa29.72■■■□□ 2.35
SYNE2-201ENST00000341472 BRINP3Q76B58 766 aa29.7■■■□□ 2.35
SYNE2-201ENST00000341472 DCCP43146 1447 aa29.69■■■□□ 2.34
SYNE2-201ENST00000341472 ROBO2Q9HCK4 1378 aa29.67■■■□□ 2.34
SYNE2-201ENST00000341472 XRN1Q8IZH2 1706 aaKnown RBP29.67■■■□□ 2.34
SYNE2-201ENST00000341472 JCADQ9P266 1359 aa29.65■■■□□ 2.34
SYNE2-201ENST00000341472 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.65■■■□□ 2.34
SYNE2-201ENST00000341472 STK26Q9P289 416 aa29.65■■■□□ 2.34
SYNE2-201ENST00000341472 ADGRL3Q9HAR2 1447 aa29.64■■■□□ 2.34
SYNE2-201ENST00000341472 TMEM132EQ6IEE7 984 aa29.62■■■□□ 2.33
SYNE2-201ENST00000341472 PTCH1Q13635 1447 aa29.62■■■□□ 2.33
SYNE2-201ENST00000341472 MST1RQ04912 1400 aa29.61■■■□□ 2.33
SYNE2-201ENST00000341472 RGS17Q9UGC6 210 aaPredicted RBP29.6■■■□□ 2.33
SYNE2-201ENST00000341472 C14orf93Q9H972 538 aaKnown RBP29.59■■■□□ 2.33
SYNE2-201ENST00000341472 PPLO60437 1756 aa29.57■■■□□ 2.32
SYNE2-201ENST00000341472 PRAG1Q86YV5 1406 aa29.56■■■□□ 2.32
SYNE2-201ENST00000341472 LRPPRCP42704 1394 aaKnown RBP29.56■■■□□ 2.32
SYNE2-201ENST00000341472 WAPLQ7Z5K2 1190 aa29.55■■■□□ 2.32
SYNE2-201ENST00000341472 ABCC11Q96J66 1382 aa29.54■■■□□ 2.32
SYNE2-201ENST00000341472 CFAP70Q5T0N1 1121 aa29.54■■■□□ 2.32
SYNE2-201ENST00000341472 SPATA31A6Q5VVP1 1343 aa29.53■■■□□ 2.32
SYNE2-201ENST00000341472 PIK3C2GO75747 1445 aa29.53■■■□□ 2.32
SYNE2-201ENST00000341472 PHLPP1O60346 1717 aa29.52■■■□□ 2.32
SYNE2-201ENST00000341472 LRRC59Q96AG4 307 aaKnown RBP29.52■■■□□ 2.32
SYNE2-201ENST00000341472 DDX17Q92841 729 aaKnown RBP29.51■■■□□ 2.31
SYNE2-201ENST00000341472 ORAI2Q96SN7 254 aa29.51■■■□□ 2.31
SYNE2-201ENST00000341472 C1orf167Q5SNV9 1468 aa29.5■■■□□ 2.31
SYNE2-201ENST00000341472 SIRT1Q96EB6 747 aa29.5■■■□□ 2.31
SYNE2-201ENST00000341472 AHDC1Q5TGY3 1603 aaPredicted RBP29.49■■■□□ 2.31
SYNE2-201ENST00000341472 KDM2AQ9Y2K7 1162 aa29.49■■■□□ 2.31
SYNE2-201ENST00000341472 SETD1AO15047 1707 aaKnown RBP29.48■■■□□ 2.31
SYNE2-201ENST00000341472 ASXL1Q8IXJ9 1541 aa29.48■■■□□ 2.31
SYNE2-201ENST00000341472 COL16A1Q07092 1604 aaPredicted RBP29.47■■■□□ 2.31
SYNE2-201ENST00000341472 MEX3CQ5U5Q3 659 aaKnown RBP29.47■■■□□ 2.31
SYNE2-201ENST00000341472 DCAF11Q8TEB1 546 aa29.47■■■□□ 2.31
SYNE2-201ENST00000341472 DHX57Q6P158 1386 aaKnown RBP29.47■■■□□ 2.31
SYNE2-201ENST00000341472 POTEAQ6S8J7 498 aa29.46■■■□□ 2.31
SYNE2-201ENST00000341472 STAC3Q96MF2 364 aa29.46■■■□□ 2.31
SYNE2-201ENST00000341472 TECPR2O15040 1411 aa29.45■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms