RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PIK3C2GO75747 1445 aa21.12■□□□□ 0.97
CCDC88C-202ENST00000334448 ZNF326Q5BKZ1 582 aaKnown RBP21.11■□□□□ 0.97
CCDC88C-202ENST00000334448 ROCK2O75116 1388 aaKnown RBP21.1■□□□□ 0.97
CCDC88C-202ENST00000334448 USP47Q96K76 1375 aa21.1■□□□□ 0.97
CCDC88C-202ENST00000334448 HSPA5P11021 654 aaKnown RBP21.09■□□□□ 0.97
CCDC88C-202ENST00000334448 ADGRF5Q8IZF2 1346 aa21.07■□□□□ 0.96
CCDC88C-202ENST00000334448 SETBP1Q9Y6X0 1596 aa21.07■□□□□ 0.96
CCDC88C-202ENST00000334448 CHGAP10645 457 aaKnown RBP21.07■□□□□ 0.96
CCDC88C-202ENST00000334448 CARD11Q9BXL7 1154 aa21.07■□□□□ 0.96
CCDC88C-202ENST00000334448 VGFO15240 615 aaPredicted RBP21.06■□□□□ 0.96
CCDC88C-202ENST00000334448 RIMS1Q86UR5 1692 aaKnown RBP21.04■□□□□ 0.96
CCDC88C-202ENST00000334448 MYO5BQ9ULV0 1848 aa21.02■□□□□ 0.96
CCDC88C-202ENST00000334448 UBR1Q8IWV7 1749 aa21.02■□□□□ 0.96
CCDC88C-202ENST00000334448 NBPF1Q3BBV0 1214 aa21.02■□□□□ 0.96
CCDC88C-202ENST00000334448 SCAF11Q99590 1463 aaKnown RBP21.01■□□□□ 0.95
CCDC88C-202ENST00000334448 C14orf93Q9H972 538 aaKnown RBP21.01■□□□□ 0.95
CCDC88C-202ENST00000334448 IQGAP1P46940 1657 aa21.01■□□□□ 0.95
CCDC88C-202ENST00000334448 RIMS2Q9UQ26 1411 aa21.01■□□□□ 0.95
CCDC88C-202ENST00000334448 ADGRB1O14514 1584 aa21.01■□□□□ 0.95
CCDC88C-202ENST00000334448 CEBPAP49715 358 aaPredicted RBP21■□□□□ 0.95
CCDC88C-202ENST00000334448 MYO3AQ8NEV4 1616 aa21■□□□□ 0.95
CCDC88C-202ENST00000334448 TMEM2Q9UHN6 1383 aa20.98■□□□□ 0.95
CCDC88C-202ENST00000334448 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.98■□□□□ 0.95
CCDC88C-202ENST00000334448 STAG3Q9UJ98 1225 aa20.98■□□□□ 0.95
CCDC88C-202ENST00000334448 ARHGAP23Q9P227 1491 aa20.98■□□□□ 0.95
CCDC88C-202ENST00000334448 SLIT1O75093 1534 aa20.98■□□□□ 0.95
CCDC88C-202ENST00000334448 CFAP70Q5T0N1 1121 aa20.96■□□□□ 0.95
CCDC88C-202ENST00000334448 DIEXFQ68CQ4 756 aaKnown RBP20.96■□□□□ 0.95
CCDC88C-202ENST00000334448 PTPRMP28827 1452 aa20.94■□□□□ 0.94
CCDC88C-202ENST00000334448 ZNF142P52746 1687 aaPredicted RBP20.94■□□□□ 0.94
CCDC88C-202ENST00000334448 CEP170BQ9Y4F5 1589 aaPredicted RBP20.93■□□□□ 0.94
CCDC88C-202ENST00000334448 HDGFP51858 240 aaKnown RBP20.93■□□□□ 0.94
CCDC88C-202ENST00000334448 HIRIP3Q9BW71 556 aaPredicted RBP20.93■□□□□ 0.94
CCDC88C-202ENST00000334448 EIF3AQ14152 1382 aaKnown RBP20.93■□□□□ 0.94
CCDC88C-202ENST00000334448 CCDC7Q96M83 1385 aa20.93■□□□□ 0.94
CCDC88C-202ENST00000334448 POLR1AO95602 1720 aaPredicted RBP20.92■□□□□ 0.94
CCDC88C-202ENST00000334448 WASHC2AQ641Q2 1341 aa20.92■□□□□ 0.94
CCDC88C-202ENST00000334448 ASXL1Q8IXJ9 1541 aa20.92■□□□□ 0.94
CCDC88C-202ENST00000334448 ST20-MTHFSA0A0A6YYL1 179 aa20.91■□□□□ 0.94
CCDC88C-202ENST00000334448 SBNO2Q9Y2G9 1366 aa20.91■□□□□ 0.94
CCDC88C-202ENST00000334448 ALKQ9UM73 1620 aa20.89■□□□□ 0.94
CCDC88C-202ENST00000334448 TESK2Q96S53 571 aa20.89■□□□□ 0.93
CCDC88C-202ENST00000334448 NRXN3Q9Y4C0 1643 aa20.89■□□□□ 0.93
CCDC88C-202ENST00000334448 THEMISQ8N1K5 641 aaPredicted RBP20.88■□□□□ 0.93
CCDC88C-202ENST00000334448 SETD1AO15047 1707 aaKnown RBP20.87■□□□□ 0.93
CCDC88C-202ENST00000334448 PLEKHG1Q9ULL1 1385 aa20.87■□□□□ 0.93
CCDC88C-202ENST00000334448 KIF7Q2M1P5 1343 aa20.87■□□□□ 0.93
CCDC88C-202ENST00000334448 C11orf95C9JLR9 678 aaPredicted RBP20.86■□□□□ 0.93
CCDC88C-202ENST00000334448 SLC24A1O60721 1099 aa20.86■□□□□ 0.93
CCDC88C-202ENST00000334448 SETD1BQ9UPS6 1966 aaKnown RBP20.86■□□□□ 0.93
CCDC88C-202ENST00000334448 NUTM2DQ5VT03 806 aaPredicted RBP20.84■□□□□ 0.93
CCDC88C-202ENST00000334448 MED14O60244 1454 aa20.83■□□□□ 0.93
CCDC88C-202ENST00000334448 DLC1Q96QB1 1528 aa20.82■□□□□ 0.92
CCDC88C-202ENST00000334448 ADAMTS13Q76LX8 1427 aa20.81■□□□□ 0.92
CCDC88C-202ENST00000334448 YTHDC2Q9H6S0 1430 aaKnown RBP20.81■□□□□ 0.92
CCDC88C-202ENST00000334448 EID1Q9Y6B2 187 aa20.8■□□□□ 0.92
CCDC88C-202ENST00000334448 LRPPRCP42704 1394 aaKnown RBP20.8■□□□□ 0.92
CCDC88C-202ENST00000334448 DIP2AQ14689 1571 aa20.8■□□□□ 0.92
CCDC88C-202ENST00000334448 TECPR2O15040 1411 aa20.79■□□□□ 0.92
CCDC88C-202ENST00000334448 LTKP29376 864 aa20.79■□□□□ 0.92
CCDC88C-202ENST00000334448 ARHGEF28Q8N1W1 1705 aaKnown RBP20.78■□□□□ 0.92
CCDC88C-202ENST00000334448 DDX10Q13206 875 aaKnown RBP20.78■□□□□ 0.92
CCDC88C-202ENST00000334448 CENPJQ9HC77 1338 aaPredicted RBP20.78■□□□□ 0.92
CCDC88C-202ENST00000334448 ABCC11Q96J66 1382 aa20.77■□□□□ 0.92
CCDC88C-202ENST00000334448 DISP3Q9P2K9 1392 aa20.77■□□□□ 0.92
CCDC88C-202ENST00000334448 TMF1P82094 1093 aa20.77■□□□□ 0.92
CCDC88C-202ENST00000334448 TMEM132EQ6IEE7 984 aa20.77■□□□□ 0.92
CCDC88C-202ENST00000334448 TXNDC2Q86VQ3 553 aa20.77■□□□□ 0.92
CCDC88C-202ENST00000334448 KNDC1Q76NI1 1749 aa20.75■□□□□ 0.91
CCDC88C-202ENST00000334448 CDCA8Q53HL2 280 aa20.74■□□□□ 0.91
CCDC88C-202ENST00000334448 PLPPR3Q6T4P5 718 aa20.74■□□□□ 0.91
CCDC88C-202ENST00000334448 SIRT1Q96EB6 747 aa20.74■□□□□ 0.91
CCDC88C-202ENST00000334448 METP08581 1390 aa20.73■□□□□ 0.91
CCDC88C-202ENST00000334448 TRAK1Q9UPV9 953 aa20.73■□□□□ 0.91
CCDC88C-202ENST00000334448 FAM135BQ49AJ0 1406 aa20.72■□□□□ 0.91
CCDC88C-202ENST00000334448 TBX22Q9Y458 520 aa20.72■□□□□ 0.91
CCDC88C-202ENST00000334448 CPS1P31327 1500 aa20.72■□□□□ 0.91
CCDC88C-202ENST00000334448 PIK3R4Q99570 1358 aa20.72■□□□□ 0.91
CCDC88C-202ENST00000334448 QRICH2Q9H0J4 1663 aa20.71■□□□□ 0.91
CCDC88C-202ENST00000334448 KDM4FA0A1W2PPD8 638 aa20.71■□□□□ 0.91
CCDC88C-202ENST00000334448 PUS7Q96PZ0 661 aaKnown RBP20.71■□□□□ 0.91
CCDC88C-202ENST00000334448 ANKLE2Q86XL3 938 aa20.68■□□□□ 0.9
CCDC88C-202ENST00000334448 PTCH1Q13635 1447 aa20.66■□□□□ 0.9
CCDC88C-202ENST00000334448 TULP4Q9NRJ4 1543 aa20.66■□□□□ 0.9
CCDC88C-202ENST00000334448 MIER1Q8N108 512 aa20.64■□□□□ 0.89
CCDC88C-202ENST00000334448 PTPRUQ92729 1446 aa20.62■□□□□ 0.89
CCDC88C-202ENST00000334448 XRN1Q8IZH2 1706 aaKnown RBP20.62■□□□□ 0.89
CCDC88C-202ENST00000334448 PRAM1Q96QH2 718 aa20.62■□□□□ 0.89
CCDC88C-202ENST00000334448 STK26Q9P289 416 aa20.62■□□□□ 0.89
CCDC88C-202ENST00000334448 NPHP4O75161 1426 aaPredicted RBP20.61■□□□□ 0.89
CCDC88C-202ENST00000334448 EVC2Q86UK5 1308 aa20.61■□□□□ 0.89
CCDC88C-202ENST00000334448 MYOM1P52179 1685 aa20.61■□□□□ 0.89
CCDC88C-202ENST00000334448 BCANQ96GW7 911 aa20.59■□□□□ 0.89
CCDC88C-202ENST00000334448 ADGRB2O60241 1585 aa20.59■□□□□ 0.89
CCDC88C-202ENST00000334448 LMTK3Q96Q04 1460 aa20.58■□□□□ 0.89
CCDC88C-202ENST00000334448 SLC26A8Q96RN1 970 aa20.58■□□□□ 0.89
CCDC88C-202ENST00000334448 POGKQ9P215 609 aa20.58■□□□□ 0.89
CCDC88C-202ENST00000334448 ROBO2Q9HCK4 1378 aa20.58■□□□□ 0.88
CCDC88C-202ENST00000334448 NINLQ9Y2I6 1382 aa20.58■□□□□ 0.88
CCDC88C-202ENST00000334448 ANP32CO43423 234 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms