RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 NRXN1Q9ULB1 1477 aa23.41■■□□□ 1.34
DDX41-201ENST00000330503 PIK3C2BO00750 1634 aa23.4■■□□□ 1.34
DDX41-201ENST00000330503 CFAP70Q5T0N1 1121 aa23.39■■□□□ 1.33
DDX41-201ENST00000330503 DISP3Q9P2K9 1392 aa23.38■■□□□ 1.33
DDX41-201ENST00000330503 CCDC184Q52MB2 194 aa23.38■■□□□ 1.33
DDX41-201ENST00000330503 SCAF11Q99590 1463 aaKnown RBP23.37■■□□□ 1.33
DDX41-201ENST00000330503 PPLO60437 1756 aa23.36■■□□□ 1.33
DDX41-201ENST00000330503 RPGRIP1LQ68CZ1 1315 aa23.35■■□□□ 1.33
DDX41-201ENST00000330503 IDI1Q13907 227 aa23.35■■□□□ 1.33
DDX41-201ENST00000330503 PPP6R1Q9UPN7 881 aa23.35■■□□□ 1.33
DDX41-201ENST00000330503 ARHGEF40Q8TER5 1519 aa23.33■■□□□ 1.33
DDX41-201ENST00000330503 PREX1Q8TCU6 1659 aa23.33■■□□□ 1.33
DDX41-201ENST00000330503 TMF1P82094 1093 aa23.33■■□□□ 1.32
DDX41-201ENST00000330503 SLC52A1Q9NWF4 448 aa23.32■■□□□ 1.32
DDX41-201ENST00000330503 FBXO31Q5XUX0 539 aaPredicted RBP23.31■■□□□ 1.32
DDX41-201ENST00000330503 PIK3C2GO75747 1445 aa23.29■■□□□ 1.32
DDX41-201ENST00000330503 C14orf93Q9H972 538 aaKnown RBP23.28■■□□□ 1.32
DDX41-201ENST00000330503 NEXMIFQ5QGS0 1516 aa23.26■■□□□ 1.31
DDX41-201ENST00000330503 CLTCQ00610 1675 aaKnown RBP23.26■■□□□ 1.31
DDX41-201ENST00000330503 PER1O15534 1290 aaPredicted RBP23.26■■□□□ 1.31
DDX41-201ENST00000330503 ERVK-7P63135 1459 aa23.26■■□□□ 1.31
DDX41-201ENST00000330503 CNGB1Q14028 1251 aaPredicted RBP23.26■■□□□ 1.31
DDX41-201ENST00000330503 MLECQ14165 292 aa23.26■■□□□ 1.31
DDX41-201ENST00000330503 MRS2Q9HD23 443 aa23.25■■□□□ 1.31
DDX41-201ENST00000330503 SETBP1Q9Y6X0 1596 aa23.25■■□□□ 1.31
DDX41-201ENST00000330503 EIF3AQ14152 1382 aaKnown RBP23.24■■□□□ 1.31
DDX41-201ENST00000330503 TMEM131LA2VDJ0 1609 aa23.23■■□□□ 1.31
DDX41-201ENST00000330503 VGFO15240 615 aaPredicted RBP23.23■■□□□ 1.31
DDX41-201ENST00000330503 NUTM2DQ5VT03 806 aaPredicted RBP23.23■■□□□ 1.31
DDX41-201ENST00000330503 MYO5BQ9ULV0 1848 aa23.21■■□□□ 1.31
DDX41-201ENST00000330503 PANK3Q9H999 370 aa23.21■■□□□ 1.31
DDX41-201ENST00000330503 ADGRB1O14514 1584 aa23.2■■□□□ 1.3
DDX41-201ENST00000330503 ZFYVE9O95405 1425 aa23.19■■□□□ 1.3
DDX41-201ENST00000330503 TMEM132EQ6IEE7 984 aa23.18■■□□□ 1.3
DDX41-201ENST00000330503 CDCA8Q53HL2 280 aa23.17■■□□□ 1.3
DDX41-201ENST00000330503 KTN1Q86UP2 1357 aaKnown RBP23.17■■□□□ 1.3
DDX41-201ENST00000330503 RALBP1Q15311 655 aa23.17■■□□□ 1.3
DDX41-201ENST00000330503 FAM9BQ8IZU0 186 aa23.17■■□□□ 1.3
DDX41-201ENST00000330503 SPATA31D1Q6ZQQ2 1576 aa23.16■■□□□ 1.3
DDX41-201ENST00000330503 MYO3AQ8NEV4 1616 aa23.16■■□□□ 1.3
DDX41-201ENST00000330503 HNRNPUQ00839 825 aaKnown RBP eCLIP23.15■■□□□ 1.3
DDX41-201ENST00000330503 TRAK1Q9UPV9 953 aa23.14■■□□□ 1.3
DDX41-201ENST00000330503 SLC24A1O60721 1099 aa23.14■■□□□ 1.29
DDX41-201ENST00000330503 ZMYM3Q14202 1370 aa23.13■■□□□ 1.29
DDX41-201ENST00000330503 PARD3Q8TEW0 1356 aa23.12■■□□□ 1.29
DDX41-201ENST00000330503 MYBBP1AQ9BQG0 1328 aaKnown RBP23.12■■□□□ 1.29
DDX41-201ENST00000330503 CENPJQ9HC77 1338 aaPredicted RBP23.12■■□□□ 1.29
DDX41-201ENST00000330503 SBNO2Q9Y2G9 1366 aa23.11■■□□□ 1.29
DDX41-201ENST00000330503 ESF1Q9H501 851 aaKnown RBP23.09■■□□□ 1.29
DDX41-201ENST00000330503 MYOM1P52179 1685 aa23.09■■□□□ 1.29
DDX41-201ENST00000330503 KDM5AP29375 1690 aaKnown RBP23.08■■□□□ 1.29
DDX41-201ENST00000330503 PNISRQ8TF01 805 aaKnown RBP23.08■■□□□ 1.28
DDX41-201ENST00000330503 A2ML1A8K2U0 1454 aa23.07■■□□□ 1.28
DDX41-201ENST00000330503 BRD4O60885 1362 aaPredicted RBP23.07■■□□□ 1.28
DDX41-201ENST00000330503 TRHP20396 242 aaPredicted RBP23.07■■□□□ 1.28
DDX41-201ENST00000330503 STAG3Q9UJ98 1225 aa23.07■■□□□ 1.28
DDX41-201ENST00000330503 CC2D1BQ5T0F9 858 aaKnown RBP23.06■■□□□ 1.28
DDX41-201ENST00000330503 TMC1Q8TDI8 760 aa23.06■■□□□ 1.28
DDX41-201ENST00000330503 ASXL1Q8IXJ9 1541 aa23.05■■□□□ 1.28
DDX41-201ENST00000330503 SENP3Q9H4L4 574 aaPredicted RBP23.04■■□□□ 1.28
DDX41-201ENST00000330503 QRICH2Q9H0J4 1663 aa23.04■■□□□ 1.28
DDX41-201ENST00000330503 ARHGEF28Q8N1W1 1705 aaKnown RBP23.02■■□□□ 1.28
DDX41-201ENST00000330503 AMER1Q5JTC6 1135 aaPredicted RBP23.02■■□□□ 1.28
DDX41-201ENST00000330503 KNSTRNQ9Y448 316 aa23.02■■□□□ 1.28
DDX41-201ENST00000330503 NLRP13Q86W25 1043 aa23.01■■□□□ 1.27
DDX41-201ENST00000330503 RIMS2Q9UQ26 1411 aa23■■□□□ 1.27
DDX41-201ENST00000330503 ALKQ9UM73 1620 aa22.99■■□□□ 1.27
DDX41-201ENST00000330503 LRPPRCP42704 1394 aaKnown RBP22.98■■□□□ 1.27
DDX41-201ENST00000330503 STK26Q9P289 416 aa22.97■■□□□ 1.27
DDX41-201ENST00000330503 TNRQ92752 1358 aa22.97■■□□□ 1.27
DDX41-201ENST00000330503 ZBED9Q6R2W3 1325 aa22.97■■□□□ 1.27
DDX41-201ENST00000330503 CARD14Q9BXL6 1004 aa22.96■■□□□ 1.27
DDX41-201ENST00000330503 YTHDC2Q9H6S0 1430 aaKnown RBP22.94■■□□□ 1.26
DDX41-201ENST00000330503 NPC1L1Q9UHC9 1359 aa22.94■■□□□ 1.26
DDX41-201ENST00000330503 PUS7Q96PZ0 661 aaKnown RBP22.93■■□□□ 1.26
DDX41-201ENST00000330503 PTPRMP28827 1452 aa22.92■■□□□ 1.26
DDX41-201ENST00000330503 TULP4Q9NRJ4 1543 aa22.92■■□□□ 1.26
DDX41-201ENST00000330503 EVC2Q86UK5 1308 aa22.91■■□□□ 1.26
DDX41-201ENST00000330503 SUPT16HQ9Y5B9 1047 aaKnown RBP22.91■■□□□ 1.26
DDX41-201ENST00000330503 CEBPAP49715 358 aaPredicted RBP22.9■■□□□ 1.26
DDX41-201ENST00000330503 SAFB2Q14151 953 aaKnown RBP eCLIP22.9■■□□□ 1.26
DDX41-201ENST00000330503 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.9■■□□□ 1.26
DDX41-201ENST00000330503 SLC12A5Q9H2X9 1139 aa22.9■■□□□ 1.26
DDX41-201ENST00000330503 PPP2R1AP30153 589 aa22.89■■□□□ 1.25
DDX41-201ENST00000330503 SETD1AO15047 1707 aaKnown RBP22.88■■□□□ 1.25
DDX41-201ENST00000330503 PRAM1Q96QH2 718 aa22.88■■□□□ 1.25
DDX41-201ENST00000330503 DNAJC5Q9H3Z4 198 aa22.87■■□□□ 1.25
DDX41-201ENST00000330503 UBR1Q8IWV7 1749 aa22.87■■□□□ 1.25
DDX41-201ENST00000330503 NRXN3Q9Y4C0 1643 aa22.87■■□□□ 1.25
DDX41-201ENST00000330503 CABP2Q9NPB3 220 aa22.85■■□□□ 1.25
DDX41-201ENST00000330503 POGKQ9P215 609 aa22.85■■□□□ 1.25
DDX41-201ENST00000330503 TMEM2Q9UHN6 1383 aa22.84■■□□□ 1.25
DDX41-201ENST00000330503 HDGFP51858 240 aaKnown RBP22.84■■□□□ 1.25
DDX41-201ENST00000330503 C3P01024 1663 aa22.83■■□□□ 1.25
DDX41-201ENST00000330503 MINK1Q8N4C8 1332 aaPredicted RBP22.83■■□□□ 1.25
DDX41-201ENST00000330503 NLRP1Q9C000 1473 aa22.82■■□□□ 1.24
DDX41-201ENST00000330503 SENP3-EIF4A1A0A087X0R7 540 aa22.81■■□□□ 1.24
DDX41-201ENST00000330503 DLC1Q96QB1 1528 aa22.81■■□□□ 1.24
DDX41-201ENST00000330503 FER1L4A9Z1Z3 1794 aa22.81■■□□□ 1.24
DDX41-201ENST00000330503 FKBP8Q14318 412 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms