RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 TMEM132EQ6IEE7 984 aa16.69■□□□□ 0.26
HMGCS1-201ENST00000325110 PANK1Q8TE04 598 aa16.69■□□□□ 0.26
HMGCS1-201ENST00000325110 ARXQ96QS3 562 aa16.69■□□□□ 0.26
HMGCS1-201ENST00000325110 EIF3AQ14152 1382 aaKnown RBP16.68■□□□□ 0.26
HMGCS1-201ENST00000325110 GPRASP1Q5JY77 1395 aa16.68■□□□□ 0.26
HMGCS1-201ENST00000325110 FAM161AQ3B820 660 aa16.68■□□□□ 0.26
HMGCS1-201ENST00000325110 ADGRF5Q8IZF2 1346 aa16.67■□□□□ 0.26
HMGCS1-201ENST00000325110 SLFN5Q08AF3 891 aa16.66■□□□□ 0.26
HMGCS1-201ENST00000325110 IL27Q8NEV9 243 aa16.66■□□□□ 0.26
HMGCS1-201ENST00000325110 ARHGEF5Q12774 1597 aa16.66■□□□□ 0.26
HMGCS1-201ENST00000325110 SCAPERQ9BY12 1400 aa16.66■□□□□ 0.26
HMGCS1-201ENST00000325110 CENPJQ9HC77 1338 aaPredicted RBP16.66■□□□□ 0.26
HMGCS1-201ENST00000325110 TTC37Q6PGP7 1564 aa16.65■□□□□ 0.26
HMGCS1-201ENST00000325110 SLC12A5Q9H2X9 1139 aa16.65■□□□□ 0.26
HMGCS1-201ENST00000325110 MAGI2Q86UL8 1455 aa16.65■□□□□ 0.26
HMGCS1-201ENST00000325110 STK26Q9P289 416 aa16.65■□□□□ 0.26
HMGCS1-201ENST00000325110 DMRT2Q9Y5R5 561 aa16.64■□□□□ 0.25
HMGCS1-201ENST00000325110 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.64■□□□□ 0.252e-6■■□□□ 11.9
HMGCS1-201ENST00000325110 E9PSI1 815 aa16.64■□□□□ 0.25
HMGCS1-201ENST00000325110 U2SURPO15042 1029 aaKnown RBP16.64■□□□□ 0.25
HMGCS1-201ENST00000325110 SLKQ9H2G2 1235 aaPredicted RBP16.63■□□□□ 0.25
HMGCS1-201ENST00000325110 NPM1P06748 294 aaKnown RBP eCLIP16.62■□□□□ 0.251e-12■■□□□ 14.3
HMGCS1-201ENST00000325110 U2AF1L5P0DN76 240 aaPredicted RBP16.62■□□□□ 0.25
HMGCS1-201ENST00000325110 U2AF1Q01081 240 aaKnown RBP eCLIP16.62■□□□□ 0.255e-6■□□□□ 10.8
HMGCS1-201ENST00000325110 TRPM1Q7Z4N2 1603 aa16.62■□□□□ 0.25
HMGCS1-201ENST00000325110 BLMP54132 1417 aaPredicted RBP16.62■□□□□ 0.25
HMGCS1-201ENST00000325110 NFKBIBQ15653 356 aa16.62■□□□□ 0.25
HMGCS1-201ENST00000325110 CDC42BPBQ9Y5S2 1711 aa16.61■□□□□ 0.25
HMGCS1-201ENST00000325110 SPRYD3Q8NCJ5 442 aa16.61■□□□□ 0.25
HMGCS1-201ENST00000325110 DUOX2Q9NRD8 1548 aa16.61■□□□□ 0.25
HMGCS1-201ENST00000325110 CFAP53Q96M91 514 aa16.6■□□□□ 0.25
HMGCS1-201ENST00000325110 PLCH2O75038 1416 aa16.6■□□□□ 0.25
HMGCS1-201ENST00000325110 PREX2Q70Z35 1606 aa16.6■□□□□ 0.25
HMGCS1-201ENST00000325110 SCAF11Q99590 1463 aaKnown RBP16.6■□□□□ 0.25
HMGCS1-201ENST00000325110 CARD14Q9BXL6 1004 aa16.59■□□□□ 0.25
HMGCS1-201ENST00000325110 ERCC6L2Q5T890 1561 aa16.59■□□□□ 0.25
HMGCS1-201ENST00000325110 FTSJ3Q8IY81 847 aaKnown RBP16.58■□□□□ 0.24
HMGCS1-201ENST00000325110 TCP11L2Q8N4U5 519 aa16.58■□□□□ 0.24
HMGCS1-201ENST00000325110 UPF2Q9HAU5 1272 aaKnown RBP16.58■□□□□ 0.24
HMGCS1-201ENST00000325110 MTHFSP49914 203 aa16.57■□□□□ 0.24
HMGCS1-201ENST00000325110 IGHDP01880 384 aa16.57■□□□□ 0.24
HMGCS1-201ENST00000325110 PRDM15P57071 1507 aaPredicted RBP16.57■□□□□ 0.24
HMGCS1-201ENST00000325110 ZMYM4Q5VZL5 1548 aa16.57■□□□□ 0.24
HMGCS1-201ENST00000325110 WDR7Q9Y4E6 1490 aa16.56■□□□□ 0.24
HMGCS1-201ENST00000325110 SRPK2P78362 688 aaKnown RBP16.56■□□□□ 0.24
HMGCS1-201ENST00000325110 USP35Q9P2H5 1018 aa16.56■□□□□ 0.24
HMGCS1-201ENST00000325110 WWC1Q8IX03 1113 aa16.56■□□□□ 0.24
HMGCS1-201ENST00000325110 FRAT2O75474 233 aaPredicted RBP16.55■□□□□ 0.24
HMGCS1-201ENST00000325110 C8orf34Q49A92 452 aa16.55■□□□□ 0.24
HMGCS1-201ENST00000325110 TNNQ9UQP3 1299 aa16.55■□□□□ 0.24
HMGCS1-201ENST00000325110 KDM2BQ8NHM5 1336 aa16.55■□□□□ 0.24
HMGCS1-201ENST00000325110 EIF2AK4Q9P2K8 1649 aaKnown RBP16.54■□□□□ 0.24
HMGCS1-201ENST00000325110 ASXL1Q8IXJ9 1541 aa16.54■□□□□ 0.24
HMGCS1-201ENST00000325110 MAST1Q9Y2H9 1570 aa16.54■□□□□ 0.24
HMGCS1-201ENST00000325110 CGNL1Q0VF96 1302 aa16.54■□□□□ 0.24
HMGCS1-201ENST00000325110 BRPF3Q9ULD4 1205 aa16.53■□□□□ 0.24
HMGCS1-201ENST00000325110 SLC24A1O60721 1099 aa16.53■□□□□ 0.24
HMGCS1-201ENST00000325110 GSE1Q14687 1217 aa16.53■□□□□ 0.24
HMGCS1-201ENST00000325110 CABP2Q9NPB3 220 aa16.53■□□□□ 0.24
HMGCS1-201ENST00000325110 ABCC2Q92887 1545 aa16.52■□□□□ 0.24
HMGCS1-201ENST00000325110 NSD3Q9BZ95 1437 aa16.52■□□□□ 0.24
HMGCS1-201ENST00000325110 NKTRP30414 1462 aaKnown RBP16.52■□□□□ 0.23
HMGCS1-201ENST00000325110 RUNDC1Q96C34 613 aa16.51■□□□□ 0.23
HMGCS1-201ENST00000325110 STAG3Q9UJ98 1225 aa16.51■□□□□ 0.23
HMGCS1-201ENST00000325110 BECN1Q14457 450 aa16.51■□□□□ 0.23
HMGCS1-201ENST00000325110 STAC3Q96MF2 364 aa16.51■□□□□ 0.23
HMGCS1-201ENST00000325110 TSR2Q969E8 191 aaKnown RBP16.5■□□□□ 0.23
HMGCS1-201ENST00000325110 E9PCH4 1651 aa16.5■□□□□ 0.23
HMGCS1-201ENST00000325110 ATP10AO60312 1499 aa16.5■□□□□ 0.23
HMGCS1-201ENST00000325110 ZNF521Q96K83 1311 aa16.5■□□□□ 0.23
HMGCS1-201ENST00000325110 MAPK8IP3Q9UPT6 1336 aa16.5■□□□□ 0.23
HMGCS1-201ENST00000325110 GGNBP2Q9H3C7 697 aa16.5■□□□□ 0.23
HMGCS1-201ENST00000325110 UGGT1Q9NYU2 1555 aa16.49■□□□□ 0.23
HMGCS1-201ENST00000325110 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.49■□□□□ 0.23
HMGCS1-201ENST00000325110 SMC4Q9NTJ3 1288 aa16.49■□□□□ 0.23
HMGCS1-201ENST00000325110 POGKQ9P215 609 aa16.49■□□□□ 0.23
HMGCS1-201ENST00000325110 MYO5CQ9NQX4 1742 aa16.48■□□□□ 0.23
HMGCS1-201ENST00000325110 NOS1P29475 1434 aa16.48■□□□□ 0.23
HMGCS1-201ENST00000325110 ITPRIPQ8IWB1 547 aa16.48■□□□□ 0.23
HMGCS1-201ENST00000325110 FANCAO15360 1455 aa16.48■□□□□ 0.23
HMGCS1-201ENST00000325110 UNC13BO14795 1591 aa16.48■□□□□ 0.23
HMGCS1-201ENST00000325110 SEC24BO95487 1268 aa16.47■□□□□ 0.23
HMGCS1-201ENST00000325110 IQGAP3Q86VI3 1631 aa16.47■□□□□ 0.23
HMGCS1-201ENST00000325110 MINK1Q8N4C8 1332 aaPredicted RBP16.47■□□□□ 0.23
HMGCS1-201ENST00000325110 PIK3C2GO75747 1445 aa16.46■□□□□ 0.23
HMGCS1-201ENST00000325110 ADGRL1O94910 1474 aa16.46■□□□□ 0.23
HMGCS1-201ENST00000325110 PDE3AQ14432 1141 aa16.46■□□□□ 0.23
HMGCS1-201ENST00000325110 EIF5BO60841 1220 aaKnown RBP16.46■□□□□ 0.23
HMGCS1-201ENST00000325110 RLBP1P12271 317 aa16.45■□□□□ 0.22
HMGCS1-201ENST00000325110 RARSP54136 660 aaKnown RBP16.45■□□□□ 0.22
HMGCS1-201ENST00000325110 MYH16Q9H6N6 1097 aa16.45■□□□□ 0.22
HMGCS1-201ENST00000325110 CHD1O14646 1710 aa16.45■□□□□ 0.22
HMGCS1-201ENST00000325110 MFAP1P55081 439 aaKnown RBP16.45■□□□□ 0.22
HMGCS1-201ENST00000325110 PMFBP1Q8TBY8 1022 aa16.45■□□□□ 0.22
HMGCS1-201ENST00000325110 PDZRN3Q9UPQ7 1066 aa16.44■□□□□ 0.22
HMGCS1-201ENST00000325110 CFAP65Q6ZU64 1925 aaKnown RBP16.44■□□□□ 0.22
HMGCS1-201ENST00000325110 RWDD1Q9H446 243 aaPredicted RBP16.44■□□□□ 0.22
HMGCS1-201ENST00000325110 RAPGEF3O95398 923 aa16.43■□□□□ 0.22
HMGCS1-201ENST00000325110 PCDHB15Q9Y5E8 787 aa16.43■□□□□ 0.22
HMGCS1-201ENST00000325110 EVC2Q86UK5 1308 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms