RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 WASHC2CQ9Y4E1 1318 aa21.59■■□□□ 1.05
USHBP1-202ENST00000324554 TET3O43151 1660 aa21.59■■□□□ 1.05
USHBP1-202ENST00000324554 UGGT1Q9NYU2 1555 aa21.59■■□□□ 1.05
USHBP1-202ENST00000324554 CEP152O94986 1710 aa21.57■■□□□ 1.04
USHBP1-202ENST00000324554 TRPM2O94759 1503 aa21.57■■□□□ 1.04
USHBP1-202ENST00000324554 SPHKAPQ2M3C7 1700 aa21.56■■□□□ 1.04
USHBP1-202ENST00000324554 DIP2CQ9Y2E4 1556 aa21.56■■□□□ 1.04
USHBP1-202ENST00000324554 TMF1P82094 1093 aa21.56■■□□□ 1.04
USHBP1-202ENST00000324554 MADDQ8WXG6 1647 aa21.55■■□□□ 1.04
USHBP1-202ENST00000324554 PTPRTO14522 1441 aa21.55■■□□□ 1.04
USHBP1-202ENST00000324554 PPRC1Q5VV67 1664 aaKnown RBP21.55■■□□□ 1.04
USHBP1-202ENST00000324554 CLTCL1P53675 1640 aa21.55■■□□□ 1.04
USHBP1-202ENST00000324554 CHGAP10645 457 aaKnown RBP21.55■■□□□ 1.04
USHBP1-202ENST00000324554 PANK3Q9H999 370 aa21.53■■□□□ 1.04
USHBP1-202ENST00000324554 CCDC136Q96JN2 1154 aa21.53■■□□□ 1.04
USHBP1-202ENST00000324554 ERICH6Q7L0X2 663 aa21.52■■□□□ 1.04
USHBP1-202ENST00000324554 CC2D1BQ5T0F9 858 aaKnown RBP21.51■■□□□ 1.03
USHBP1-202ENST00000324554 EFCAB6Q5THR3 1501 aa21.51■■□□□ 1.03
USHBP1-202ENST00000324554 IQGAP1P46940 1657 aa21.5■■□□□ 1.03
USHBP1-202ENST00000324554 KIF13AQ9H1H9 1805 aa21.49■■□□□ 1.03
USHBP1-202ENST00000324554 NPATQ14207 1427 aa21.49■■□□□ 1.03
USHBP1-202ENST00000324554 MLECQ14165 292 aa21.47■■□□□ 1.03
USHBP1-202ENST00000324554 STAC3Q96MF2 364 aa21.45■■□□□ 1.02
USHBP1-202ENST00000324554 ABCC3O15438 1527 aa21.45■■□□□ 1.02
USHBP1-202ENST00000324554 ZMYM4Q5VZL5 1548 aa21.45■■□□□ 1.02
USHBP1-202ENST00000324554 INSRP06213 1382 aa21.45■■□□□ 1.02
USHBP1-202ENST00000324554 SENP3Q9H4L4 574 aaPredicted RBP21.45■■□□□ 1.02
USHBP1-202ENST00000324554 SCAF11Q99590 1463 aaKnown RBP21.44■■□□□ 1.02
USHBP1-202ENST00000324554 BLMP54132 1417 aaPredicted RBP21.44■■□□□ 1.02
USHBP1-202ENST00000324554 PDE3BQ13370 1112 aa21.44■■□□□ 1.02
USHBP1-202ENST00000324554 SALL2Q9Y467 1007 aaPredicted RBP21.44■■□□□ 1.02
USHBP1-202ENST00000324554 LMTK2Q8IWU2 1503 aa21.43■■□□□ 1.02
USHBP1-202ENST00000324554 NUTM2DQ5VT03 806 aaPredicted RBP21.42■■□□□ 1.02
USHBP1-202ENST00000324554 RRP1P56182 461 aaKnown RBP21.41■■□□□ 1.02
USHBP1-202ENST00000324554 ADGRF5Q8IZF2 1346 aa21.41■■□□□ 1.02
USHBP1-202ENST00000324554 RCAN3Q9UKA8 241 aa21.4■■□□□ 1.02
USHBP1-202ENST00000324554 NEURL4Q96JN8 1562 aa21.4■■□□□ 1.02
USHBP1-202ENST00000324554 SYNMO15061 1565 aa21.38■■□□□ 1.01
USHBP1-202ENST00000324554 CFAP70Q5T0N1 1121 aa21.38■■□□□ 1.01
USHBP1-202ENST00000324554 FBXO31Q5XUX0 539 aaPredicted RBP21.38■■□□□ 1.01
USHBP1-202ENST00000324554 CAMSAP1Q5T5Y3 1602 aa21.37■■□□□ 1.01
USHBP1-202ENST00000324554 SIGLEC1Q9BZZ2 1709 aa21.37■■□□□ 1.01
USHBP1-202ENST00000324554 KIAA1210Q9ULL0 1709 aa21.37■■□□□ 1.01
USHBP1-202ENST00000324554 MROH2AA6NES4 1674 aa21.37■■□□□ 1.01
USHBP1-202ENST00000324554 CDCA8Q53HL2 280 aa21.36■■□□□ 1.01
USHBP1-202ENST00000324554 CDCA7LQ96GN5 454 aa21.36■■□□□ 1.01
USHBP1-202ENST00000324554 KIF1BO60333 1816 aa21.36■■□□□ 1.01
USHBP1-202ENST00000324554 TRHP20396 242 aaPredicted RBP21.36■■□□□ 1.01
USHBP1-202ENST00000324554 EXOC6Q8TAG9 804 aa21.36■■□□□ 1.01
USHBP1-202ENST00000324554 BCL11AQ9H165 835 aa21.36■■□□□ 1.01
USHBP1-202ENST00000324554 KNSTRNQ9Y448 316 aa21.36■■□□□ 1.01
USHBP1-202ENST00000324554 AMER1Q5JTC6 1135 aaPredicted RBP21.34■■□□□ 1.01
USHBP1-202ENST00000324554 NOP58Q9Y2X3 529 aaKnown RBP21.34■■□□□ 1.01
USHBP1-202ENST00000324554 EIF3AQ14152 1382 aaKnown RBP21.34■■□□□ 1.01
USHBP1-202ENST00000324554 PAK3O75914 559 aaPredicted RBP21.34■■□□□ 1.01
USHBP1-202ENST00000324554 IDI1Q13907 227 aa21.33■■□□□ 1.01
USHBP1-202ENST00000324554 MYOM1P52179 1685 aa21.33■■□□□ 1
USHBP1-202ENST00000324554 MYOM2P54296 1465 aa21.32■■□□□ 1
USHBP1-202ENST00000324554 NOS1P29475 1434 aa21.32■■□□□ 1
USHBP1-202ENST00000324554 PPP2R1AP30153 589 aa21.31■■□□□ 1
USHBP1-202ENST00000324554 ASXL1Q8IXJ9 1541 aa21.3■■□□□ 1
USHBP1-202ENST00000324554 ADAMTS8Q9UP79 889 aa21.3■■□□□ 1
USHBP1-202ENST00000324554 KDM5AP29375 1690 aaKnown RBP21.28■■□□□ 1
USHBP1-202ENST00000324554 IFT172Q9UG01 1749 aa21.27■■□□□ 1
USHBP1-202ENST00000324554 ADGRB3O60242 1522 aa21.27■■□□□ 1
USHBP1-202ENST00000324554 TMEM132EQ6IEE7 984 aa21.26■□□□□ 0.99
USHBP1-202ENST00000324554 NPC1L1Q9UHC9 1359 aa21.26■□□□□ 0.99
USHBP1-202ENST00000324554 ANP32AP39687 249 aaKnown RBP21.25■□□□□ 0.99
USHBP1-202ENST00000324554 IPO9Q96P70 1041 aaKnown RBP21.25■□□□□ 0.99
USHBP1-202ENST00000324554 PIK3C2GO75747 1445 aa21.24■□□□□ 0.99
USHBP1-202ENST00000324554 ERVK-7P63135 1459 aa21.24■□□□□ 0.99
USHBP1-202ENST00000324554 NRXN1Q9ULB1 1477 aa21.24■□□□□ 0.99
USHBP1-202ENST00000324554 ARHGAP31Q2M1Z3 1444 aa21.24■□□□□ 0.99
USHBP1-202ENST00000324554 WDR43Q15061 677 aaKnown RBP eCLIP21.23■□□□□ 0.99
USHBP1-202ENST00000324554 ZC3H13Q5T200 1668 aaKnown RBP21.22■□□□□ 0.99
USHBP1-202ENST00000324554 PLIN1O60240 522 aa21.22■□□□□ 0.99
USHBP1-202ENST00000324554 SLC24A1O60721 1099 aa21.21■□□□□ 0.99
USHBP1-202ENST00000324554 PLEKHH1Q9ULM0 1364 aa21.21■□□□□ 0.99
USHBP1-202ENST00000324554 CLTCQ00610 1675 aaKnown RBP21.21■□□□□ 0.99
USHBP1-202ENST00000324554 TRAK1Q9UPV9 953 aa21.2■□□□□ 0.99
USHBP1-202ENST00000324554 ESF1Q9H501 851 aaKnown RBP21.2■□□□□ 0.98
USHBP1-202ENST00000324554 ARHGEF40Q8TER5 1519 aa21.2■□□□□ 0.98
USHBP1-202ENST00000324554 SLC52A1Q9NWF4 448 aa21.19■□□□□ 0.98
USHBP1-202ENST00000324554 STAG3Q9UJ98 1225 aa21.19■□□□□ 0.98
USHBP1-202ENST00000324554 PREX1Q8TCU6 1659 aa21.19■□□□□ 0.98
USHBP1-202ENST00000324554 MYO3AQ8NEV4 1616 aa21.19■□□□□ 0.98
USHBP1-202ENST00000324554 NBR1Q14596 966 aa21.18■□□□□ 0.98
USHBP1-202ENST00000324554 PLPPR3Q6T4P5 718 aa21.18■□□□□ 0.98
USHBP1-202ENST00000324554 PIK3C2BO00750 1634 aa21.18■□□□□ 0.98
USHBP1-202ENST00000324554 AGLP35573 1532 aa21.18■□□□□ 0.98
USHBP1-202ENST00000324554 ZNF521Q96K83 1311 aa21.17■□□□□ 0.98
USHBP1-202ENST00000324554 TCERG1O14776 1098 aaKnown RBP21.17■□□□□ 0.98
USHBP1-202ENST00000324554 PPLO60437 1756 aa21.17■□□□□ 0.98
USHBP1-202ENST00000324554 REREQ9P2R6 1566 aa21.16■□□□□ 0.98
USHBP1-202ENST00000324554 MYO5BQ9ULV0 1848 aa21.16■□□□□ 0.98
USHBP1-202ENST00000324554 SBNO2Q9Y2G9 1366 aa21.16■□□□□ 0.98
USHBP1-202ENST00000324554 C14orf93Q9H972 538 aaKnown RBP21.16■□□□□ 0.98
USHBP1-202ENST00000324554 SETBP1Q9Y6X0 1596 aa21.15■□□□□ 0.98
USHBP1-202ENST00000324554 RPGRIP1LQ68CZ1 1315 aa21.15■□□□□ 0.98
USHBP1-202ENST00000324554 VGFO15240 615 aaPredicted RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms