RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 MIA2Q96PC5 1412 aa8.62□□□□□ -1.03
SMC1A-201ENST00000322213 CCDC34Q96HJ3 373 aa8.62□□□□□ -1.03
SMC1A-201ENST00000322213 MORC1Q86VD1 984 aa8.62□□□□□ -1.03
SMC1A-201ENST00000322213 MYH7P12883 1935 aa8.62□□□□□ -1.03
SMC1A-201ENST00000322213 MYH15Q9Y2K3 1946 aa8.62□□□□□ -1.03
SMC1A-201ENST00000322213 IRX3P78415 501 aaPredicted RBP8.62□□□□□ -1.03
SMC1A-201ENST00000322213 ROCK1Q13464 1354 aa8.62□□□□□ -1.03
SMC1A-201ENST00000322213 IFT57Q9NWB7 429 aa8.62□□□□□ -1.03
SMC1A-201ENST00000322213 L3MBTL2Q969R5 705 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 HMMRO75330 724 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 ZSCAN30Q86W11 494 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 FOXD1Q16676 465 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 KIF3AQ9Y496 699 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 DYNC1I1O14576 645 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 U2SURPO15042 1029 aaKnown RBP8.61□□□□□ -1.03
SMC1A-201ENST00000322213 MBD3O95983 291 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 KDM5AP29375 1690 aaKnown RBP8.61□□□□□ -1.03
SMC1A-201ENST00000322213 KIF20BQ96Q89 1820 aa8.61□□□□□ -1.03
SMC1A-201ENST00000322213 ACBD3Q9H3P7 528 aa8.6□□□□□ -1.03
SMC1A-201ENST00000322213 ZHX1Q9UKY1 873 aaPredicted RBP8.6□□□□□ -1.03
SMC1A-201ENST00000322213 AK7Q96M32 723 aa8.6□□□□□ -1.03
SMC1A-201ENST00000322213 MYOM3Q5VTT5 1437 aa8.6□□□□□ -1.03
SMC1A-201ENST00000322213 CLCN1P35523 988 aa8.6□□□□□ -1.03
SMC1A-201ENST00000322213 EIF2AK4Q9P2K8 1649 aaKnown RBP8.6□□□□□ -1.03
SMC1A-201ENST00000322213 CCDC144AA2RUR9 1427 aa8.6□□□□□ -1.03
SMC1A-201ENST00000322213 WASHC2CQ9Y4E1 1318 aa8.6□□□□□ -1.03
SMC1A-201ENST00000322213 MAP3K1Q13233 1512 aa8.59□□□□□ -1.03
SMC1A-201ENST00000322213 TRIM6-TRIM34B2RNG4 842 aa8.59□□□□□ -1.03
SMC1A-201ENST00000322213 LEKR1Q6ZMV7 388 aa8.59□□□□□ -1.03
SMC1A-201ENST00000322213 DDX19BQ9UMR2 479 aa8.59□□□□□ -1.03
SMC1A-201ENST00000322213 CAVIN1Q6NZI2 390 aaKnown RBP8.59□□□□□ -1.04
SMC1A-201ENST00000322213 TSPY26PQ9H489 355 aa8.59□□□□□ -1.04
SMC1A-201ENST00000322213 HSP90B2PQ58FF3 399 aa8.58□□□□□ -1.04
SMC1A-201ENST00000322213 FHOD3Q2V2M9 1422 aa8.58□□□□□ -1.04
SMC1A-201ENST00000322213 KIF7Q2M1P5 1343 aa8.58□□□□□ -1.04
SMC1A-201ENST00000322213 BRD2P25440 801 aaKnown RBP8.58□□□□□ -1.04
SMC1A-201ENST00000322213 CLUAP1Q96AJ1 413 aa8.58□□□□□ -1.04
SMC1A-201ENST00000322213 ANKRD12Q6UB98 2062 aa8.57□□□□□ -1.04
SMC1A-201ENST00000322213 BECN2A8MW95 431 aa8.57□□□□□ -1.04
SMC1A-201ENST00000322213 CCP110O43303 1012 aa8.57□□□□□ -1.04
SMC1A-201ENST00000322213 RDXP35241 583 aaKnown RBP8.57□□□□□ -1.04
SMC1A-201ENST00000322213 PKD2Q13563 968 aa8.57□□□□□ -1.04
SMC1A-201ENST00000322213 PAXIP1Q6ZW49 1069 aaPredicted RBP8.57□□□□□ -1.04
SMC1A-201ENST00000322213 PDCL2Q8N4E4 241 aa8.57□□□□□ -1.04
SMC1A-201ENST00000322213 DNAJC2Q99543 621 aaKnown RBP8.57□□□□□ -1.04
SMC1A-201ENST00000322213 BCL11BQ9C0K0 894 aaPredicted RBP8.57□□□□□ -1.04
SMC1A-201ENST00000322213 NAT10Q9H0A0 1025 aaKnown RBP8.57□□□□□ -1.04
SMC1A-201ENST00000322213 NUP155O75694 1391 aa8.57□□□□□ -1.04
SMC1A-201ENST00000322213 FOXD4L5Q5VV16 416 aaPredicted RBP8.57□□□□□ -1.04
SMC1A-201ENST00000322213 ZKSCAN2Q63HK3 967 aa8.57□□□□□ -1.04
SMC1A-201ENST00000322213 FOXD4L4Q8WXT5 416 aaPredicted RBP8.57□□□□□ -1.04
SMC1A-201ENST00000322213 SMAP1Q8IYB5 467 aaPredicted RBP8.56□□□□□ -1.04
SMC1A-201ENST00000322213 HOMER1Q86YM7 354 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 MCM5P33992 734 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 CCAR2Q8N163 923 aaKnown RBP8.56□□□□□ -1.04
SMC1A-201ENST00000322213 KIF20AO95235 890 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 CCDC146Q8IYE0 955 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 DEF6Q9H4E7 631 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 CIZ1Q9ULV3 898 aaPredicted RBP8.56□□□□□ -1.04
SMC1A-201ENST00000322213 CALCOCO1Q9P1Z2 691 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 HFM1A2PYH4 1435 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 PATL2C9JE40 543 aaKnown RBP8.56□□□□□ -1.04
SMC1A-201ENST00000322213 SASS6Q6UVJ0 657 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 MAPKBP1O60336 1514 aa8.56□□□□□ -1.04
SMC1A-201ENST00000322213 PLEKHD1A6NEE1 506 aa8.55□□□□□ -1.04
SMC1A-201ENST00000322213 DHX8Q14562 1220 aaKnown RBP8.55□□□□□ -1.04
SMC1A-201ENST00000322213 TPM1P09493 284 aa8.55□□□□□ -1.04
SMC1A-201ENST00000322213 KAT6AQ92794 2004 aa8.55□□□□□ -1.04
SMC1A-201ENST00000322213 POLA1P09884 1462 aaPredicted RBP8.55□□□□□ -1.04
SMC1A-201ENST00000322213 NKTRP30414 1462 aaKnown RBP8.55□□□□□ -1.04
SMC1A-201ENST00000322213 CASKIN1Q8WXD9 1431 aa8.55□□□□□ -1.04
SMC1A-201ENST00000322213 GTPBP4Q9BZE4 634 aaKnown RBP8.55□□□□□ -1.04
SMC1A-201ENST00000322213 INTS3Q68E01 1043 aaKnown RBP8.54□□□□□ -1.04
SMC1A-201ENST00000322213 MCM4P33991 863 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 TPD52L1Q16890 204 aaPredicted RBP8.54□□□□□ -1.04
SMC1A-201ENST00000322213 ANKRD45Q5TZF3 282 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 ABCA5Q8WWZ7 1642 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 HSP90B1P14625 803 aaKnown RBP8.54□□□□□ -1.04
SMC1A-201ENST00000322213 NESP48681 1621 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 MNS1Q8NEH6 495 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 FAM184AQ8NB25 1140 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 H3BQV1 296 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 IFFO2Q5TF58 517 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 SCAPERQ9BY12 1400 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 CGNQ9P2M7 1197 aaKnown RBP8.54□□□□□ -1.04
SMC1A-201ENST00000322213 USP8P40818 1118 aa8.54□□□□□ -1.04
SMC1A-201ENST00000322213 U2AF1L5P0DN76 240 aaPredicted RBP8.53□□□□□ -1.04
SMC1A-201ENST00000322213 U2AF1Q01081 240 aaKnown RBP eCLIP8.53□□□□□ -1.04
SMC1A-201ENST00000322213 AXDND1Q5T1B0 1012 aaPredicted RBP8.53□□□□□ -1.04
SMC1A-201ENST00000322213 APBB1O00213 710 aa8.53□□□□□ -1.04
SMC1A-201ENST00000322213 CHMP4CQ96CF2 233 aa8.53□□□□□ -1.04
SMC1A-201ENST00000322213 POGKQ9P215 609 aa8.53□□□□□ -1.04
SMC1A-201ENST00000322213 TSR1Q2NL82 804 aaKnown RBP8.53□□□□□ -1.04
SMC1A-201ENST00000322213 GOLGA4Q13439 2230 aaKnown RBP8.53□□□□□ -1.04
SMC1A-201ENST00000322213 CWC22Q9HCG8 908 aaKnown RBP8.53□□□□□ -1.04
SMC1A-201ENST00000322213 NOL8Q76FK4 1167 aaKnown RBP8.53□□□□□ -1.04
SMC1A-201ENST00000322213 HOMEZQ8IX15 550 aa8.53□□□□□ -1.04
SMC1A-201ENST00000322213 COG6Q9Y2V7 657 aa8.53□□□□□ -1.04
SMC1A-201ENST00000322213 THOC2Q8NI27 1593 aaKnown RBP8.52□□□□□ -1.04
SMC1A-201ENST00000322213 NCOA2Q15596 1464 aa8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms