RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 ASXL1Q8IXJ9 1541 aa25.07■■□□□ 1.6
RTN4-201ENST00000317610 MYOM1P52179 1685 aa25.06■■□□□ 1.6
RTN4-201ENST00000317610 CHD1O14646 1710 aa25.06■■□□□ 1.6
RTN4-201ENST00000317610 NEFMP07197 916 aa25.06■■□□□ 1.6
RTN4-201ENST00000317610 CENPQQ7L2Z9 268 aaPredicted RBP25.06■■□□□ 1.6
RTN4-201ENST00000317610 LAS1LQ9Y4W2 734 aaKnown RBP25.06■■□□□ 1.6
RTN4-201ENST00000317610 NPC1L1Q9UHC9 1359 aa25.06■■□□□ 1.6
RTN4-201ENST00000317610 SCAF11Q99590 1463 aaKnown RBP25.06■■□□□ 1.6
RTN4-201ENST00000317610 ABCC1P33527 1531 aa25.06■■□□□ 1.6
RTN4-201ENST00000317610 PLCH2O75038 1416 aa25.05■■□□□ 1.6
RTN4-201ENST00000317610 WDR43Q15061 677 aaKnown RBP eCLIP25.04■■□□□ 1.6
RTN4-201ENST00000317610 CDCA8Q53HL2 280 aa25.04■■□□□ 1.6
RTN4-201ENST00000317610 STAC3Q96MF2 364 aa25.04■■□□□ 1.6
RTN4-201ENST00000317610 SKAP1Q86WV1 359 aa25.03■■□□□ 1.6
RTN4-201ENST00000317610 GOLGA2Q08379 1002 aa25.02■■□□□ 1.6
RTN4-201ENST00000317610 PTPRTO14522 1441 aa25.01■■□□□ 1.59
RTN4-201ENST00000317610 KIAA1210Q9ULL0 1709 aa25■■□□□ 1.59
RTN4-201ENST00000317610 TRMT2AQ8IZ69 625 aaKnown RBP24.99■■□□□ 1.59
RTN4-201ENST00000317610 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.99■■□□□ 1.59
RTN4-201ENST00000317610 CLTCL1P53675 1640 aa24.99■■□□□ 1.59
RTN4-201ENST00000317610 SLFN5Q08AF3 891 aa24.98■■□□□ 1.59
RTN4-201ENST00000317610 DEPDC5O75140 1603 aa24.98■■□□□ 1.59
RTN4-201ENST00000317610 TRAPPC8Q9Y2L5 1435 aa24.96■■□□□ 1.59
RTN4-201ENST00000317610 NEURL4Q96JN8 1562 aa24.96■■□□□ 1.59
RTN4-201ENST00000317610 KDM5AP29375 1690 aaKnown RBP24.96■■□□□ 1.59
RTN4-201ENST00000317610 EIF3AQ14152 1382 aaKnown RBP24.95■■□□□ 1.59
RTN4-201ENST00000317610 EFCAB2Q5VUJ9 269 aa24.95■■□□□ 1.58
RTN4-201ENST00000317610 RTEL1-TNFRSF6BF6WH68 1400 aa24.95■■□□□ 1.58
RTN4-201ENST00000317610 ERCC6L2Q5T890 1561 aa24.94■■□□□ 1.58
RTN4-201ENST00000317610 TET3O43151 1660 aa24.94■■□□□ 1.58
RTN4-201ENST00000317610 FAM161AQ3B820 660 aa24.94■■□□□ 1.58
RTN4-201ENST00000317610 ZCCHC11Q5TAX3 1644 aaKnown RBP24.93■■□□□ 1.58
RTN4-201ENST00000317610 C8orf34Q49A92 452 aa24.92■■□□□ 1.58
RTN4-201ENST00000317610 ZFYVE16Q7Z3T8 1539 aa24.92■■□□□ 1.58
RTN4-201ENST00000317610 NKTRP30414 1462 aaKnown RBP24.91■■□□□ 1.58
RTN4-201ENST00000317610 ARAP3Q8WWN8 1544 aa24.9■■□□□ 1.58
RTN4-201ENST00000317610 VWDEQ8N2E2 1590 aa24.89■■□□□ 1.58
RTN4-201ENST00000317610 UHRF1BP1LA0JNW5 1464 aa24.88■■□□□ 1.57
RTN4-201ENST00000317610 NGEFQ8N5V2 710 aa24.86■■□□□ 1.57
RTN4-201ENST00000317610 VIRMAQ69YN4 1812 aaKnown RBP24.85■■□□□ 1.57
RTN4-201ENST00000317610 SPAG9O60271 1321 aaKnown RBP24.85■■□□□ 1.57
RTN4-201ENST00000317610 SLC24A1O60721 1099 aa24.84■■□□□ 1.57
RTN4-201ENST00000317610 MYOM2P54296 1465 aa24.84■■□□□ 1.57
RTN4-201ENST00000317610 MAP3K4Q9Y6R4 1608 aa24.84■■□□□ 1.57
RTN4-201ENST00000317610 ERVK-7P63135 1459 aa24.83■■□□□ 1.57
RTN4-201ENST00000317610 NFKBIBQ15653 356 aa24.83■■□□□ 1.57
RTN4-201ENST00000317610 SPINK5Q9NQ38 1064 aaPredicted RBP24.83■■□□□ 1.57
RTN4-201ENST00000317610 E9PSI1 815 aa24.83■■□□□ 1.56
RTN4-201ENST00000317610 CCDC146Q8IYE0 955 aa24.82■■□□□ 1.56
RTN4-201ENST00000317610 APAF1O14727 1248 aa24.81■■□□□ 1.56
RTN4-201ENST00000317610 ABCA6Q8N139 1617 aa24.81■■□□□ 1.56
RTN4-201ENST00000317610 IL27Q8NEV9 243 aa24.81■■□□□ 1.56
RTN4-201ENST00000317610 INO80Q9ULG1 1556 aaPredicted RBP24.8■■□□□ 1.56
RTN4-201ENST00000317610 MYO3AQ8NEV4 1616 aa24.8■■□□□ 1.56
RTN4-201ENST00000317610 IFT172Q9UG01 1749 aa24.79■■□□□ 1.56
RTN4-201ENST00000317610 DAXXQ9UER7 740 aaPredicted RBP24.78■■□□□ 1.56
RTN4-201ENST00000317610 NINLQ9Y2I6 1382 aa24.78■■□□□ 1.56
RTN4-201ENST00000317610 SLC4A3P48751 1232 aa24.78■■□□□ 1.56
RTN4-201ENST00000317610 GSE1Q14687 1217 aa24.78■■□□□ 1.56
RTN4-201ENST00000317610 KANK1Q14678 1352 aa24.76■■□□□ 1.55
RTN4-201ENST00000317610 BCAR3O75815 825 aa24.76■■□□□ 1.55
RTN4-201ENST00000317610 ATP7AQ04656 1500 aa24.76■■□□□ 1.55
RTN4-201ENST00000317610 POLR3AO14802 1390 aaPredicted RBP24.75■■□□□ 1.55
RTN4-201ENST00000317610 PDE3AQ14432 1141 aa24.75■■□□□ 1.55
RTN4-201ENST00000317610 AFAP1Q8N556 730 aa24.75■■□□□ 1.55
RTN4-201ENST00000317610 SBNO2Q9Y2G9 1366 aa24.74■■□□□ 1.55
RTN4-201ENST00000317610 CGNL1Q0VF96 1302 aa24.74■■□□□ 1.55
RTN4-201ENST00000317610 RGS3P49796 1198 aa24.74■■□□□ 1.55
RTN4-201ENST00000317610 MROH1Q8NDA8 1641 aa24.74■■□□□ 1.55
RTN4-201ENST00000317610 KIF1BO60333 1816 aa24.74■■□□□ 1.55
RTN4-201ENST00000317610 CARD14Q9BXL6 1004 aa24.74■■□□□ 1.55
RTN4-201ENST00000317610 NRXN1Q9ULB1 1477 aa24.73■■□□□ 1.55
RTN4-201ENST00000317610 DMRT2Q9Y5R5 561 aa24.72■■□□□ 1.55
RTN4-201ENST00000317610 ABCA9Q8IUA7 1624 aa24.71■■□□□ 1.55
RTN4-201ENST00000317610 SHPRHQ149N8 1683 aa24.71■■□□□ 1.55
RTN4-201ENST00000317610 CFAP70Q5T0N1 1121 aa24.7■■□□□ 1.55
RTN4-201ENST00000317610 IGHDP01880 384 aa24.7■■□□□ 1.54
RTN4-201ENST00000317610 UGGT1Q9NYU2 1555 aa24.68■■□□□ 1.54
RTN4-201ENST00000317610 ADGRF5Q8IZF2 1346 aa24.67■■□□□ 1.54
RTN4-201ENST00000317610 CENPJQ9HC77 1338 aaPredicted RBP24.67■■□□□ 1.54
RTN4-201ENST00000317610 MROH2AA6NES4 1674 aa24.67■■□□□ 1.54
RTN4-201ENST00000317610 EFCAB6Q5THR3 1501 aa24.67■■□□□ 1.54
RTN4-201ENST00000317610 USP19O94966 1318 aa24.67■■□□□ 1.54
RTN4-201ENST00000317610 SETBP1Q9Y6X0 1596 aa24.67■■□□□ 1.54
RTN4-201ENST00000317610 WWC1Q8IX03 1113 aa24.67■■□□□ 1.54
RTN4-201ENST00000317610 MAPK8IP3Q9UPT6 1336 aa24.66■■□□□ 1.54
RTN4-201ENST00000317610 CLUAP1Q96AJ1 413 aa24.65■■□□□ 1.54
RTN4-201ENST00000317610 FRAT1Q92837 279 aaPredicted RBP24.64■■□□□ 1.54
RTN4-201ENST00000317610 ZC3H13Q5T200 1668 aaKnown RBP24.64■■□□□ 1.54
RTN4-201ENST00000317610 IQSEC2Q5JU85 1478 aa24.64■■□□□ 1.54
RTN4-201ENST00000317610 FANCAO15360 1455 aa24.62■■□□□ 1.53
RTN4-201ENST00000317610 KIF3BO15066 747 aa24.62■■□□□ 1.53
RTN4-201ENST00000317610 AAMPQ13685 434 aa24.62■■□□□ 1.53
RTN4-201ENST00000317610 USP32Q8NFA0 1604 aa24.62■■□□□ 1.53
RTN4-201ENST00000317610 PPRC1Q5VV67 1664 aaKnown RBP24.61■■□□□ 1.53
RTN4-201ENST00000317610 LMTK2Q8IWU2 1503 aa24.61■■□□□ 1.53
RTN4-201ENST00000317610 ZMYM3Q14202 1370 aa24.61■■□□□ 1.53
RTN4-201ENST00000317610 ADGRB3O60242 1522 aa24.6■■□□□ 1.53
RTN4-201ENST00000317610 PHF23Q9BUL5 403 aaPredicted RBP24.6■■□□□ 1.53
RTN4-201ENST00000317610 NLRP1Q9C000 1473 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms