RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 NOS1P29475 1434 aa25.16■■□□□ 1.62
CCDC43-201ENST00000315286 CFAP70Q5T0N1 1121 aa25.15■■□□□ 1.62
CCDC43-201ENST00000315286 ZC3H13Q5T200 1668 aaKnown RBP25.14■■□□□ 1.62
CCDC43-201ENST00000315286 FAM9BQ8IZU0 186 aa25.14■■□□□ 1.62
CCDC43-201ENST00000315286 ARHGAP31Q2M1Z3 1444 aa25.13■■□□□ 1.61
CCDC43-201ENST00000315286 KIF13AQ9H1H9 1805 aa25.13■■□□□ 1.61
CCDC43-201ENST00000315286 NRXN1Q9ULB1 1477 aa25.12■■□□□ 1.61
CCDC43-201ENST00000315286 SYNMO15061 1565 aa25.11■■□□□ 1.61
CCDC43-201ENST00000315286 PPLO60437 1756 aa25.1■■□□□ 1.61
CCDC43-201ENST00000315286 PIK3C2BO00750 1634 aa25.09■■□□□ 1.61
CCDC43-201ENST00000315286 PER1O15534 1290 aaPredicted RBP25.08■■□□□ 1.61
CCDC43-201ENST00000315286 RPGRIP1LQ68CZ1 1315 aa25.06■■□□□ 1.6
CCDC43-201ENST00000315286 EIF3AQ14152 1382 aaKnown RBP25.05■■□□□ 1.6
CCDC43-201ENST00000315286 KTN1Q86UP2 1357 aaKnown RBP25.05■■□□□ 1.6
CCDC43-201ENST00000315286 RALBP1Q15311 655 aa25.05■■□□□ 1.6
CCDC43-201ENST00000315286 PANK3Q9H999 370 aa25.05■■□□□ 1.6
CCDC43-201ENST00000315286 REREQ9P2R6 1566 aa25.04■■□□□ 1.6
CCDC43-201ENST00000315286 IDI1Q13907 227 aa25.03■■□□□ 1.6
CCDC43-201ENST00000315286 SUPT16HQ9Y5B9 1047 aaKnown RBP25.02■■□□□ 1.6
CCDC43-201ENST00000315286 PIK3C2GO75747 1445 aa25.02■■□□□ 1.6
CCDC43-201ENST00000315286 AGLP35573 1532 aa25.01■■□□□ 1.59
CCDC43-201ENST00000315286 MYBBP1AQ9BQG0 1328 aaKnown RBP25■■□□□ 1.59
CCDC43-201ENST00000315286 PREX1Q8TCU6 1659 aa25■■□□□ 1.59
CCDC43-201ENST00000315286 C14orf93Q9H972 538 aaKnown RBP25■■□□□ 1.59
CCDC43-201ENST00000315286 SLC52A1Q9NWF4 448 aa25■■□□□ 1.59
CCDC43-201ENST00000315286 CDCA8Q53HL2 280 aa24.99■■□□□ 1.59
CCDC43-201ENST00000315286 TMC1Q8TDI8 760 aa24.99■■□□□ 1.59
CCDC43-201ENST00000315286 SETBP1Q9Y6X0 1596 aa24.99■■□□□ 1.59
CCDC43-201ENST00000315286 PARD3Q8TEW0 1356 aa24.98■■□□□ 1.59
CCDC43-201ENST00000315286 PNISRQ8TF01 805 aaKnown RBP24.97■■□□□ 1.59
CCDC43-201ENST00000315286 NEXMIFQ5QGS0 1516 aa24.96■■□□□ 1.59
CCDC43-201ENST00000315286 NUTM2DQ5VT03 806 aaPredicted RBP24.96■■□□□ 1.59
CCDC43-201ENST00000315286 FBXO31Q5XUX0 539 aaPredicted RBP24.96■■□□□ 1.59
CCDC43-201ENST00000315286 BRD4O60885 1362 aaPredicted RBP24.95■■□□□ 1.58
CCDC43-201ENST00000315286 PPP6R1Q9UPN7 881 aa24.95■■□□□ 1.58
CCDC43-201ENST00000315286 VGFO15240 615 aaPredicted RBP24.94■■□□□ 1.58
CCDC43-201ENST00000315286 CC2D1BQ5T0F9 858 aaKnown RBP24.93■■□□□ 1.58
CCDC43-201ENST00000315286 MYO5BQ9ULV0 1848 aa24.93■■□□□ 1.58
CCDC43-201ENST00000315286 ZBED9Q6R2W3 1325 aa24.93■■□□□ 1.58
CCDC43-201ENST00000315286 ADGRB1O14514 1584 aa24.93■■□□□ 1.58
CCDC43-201ENST00000315286 SLC24A1O60721 1099 aa24.92■■□□□ 1.58
CCDC43-201ENST00000315286 TMEM132EQ6IEE7 984 aa24.92■■□□□ 1.58
CCDC43-201ENST00000315286 MYO3AQ8NEV4 1616 aa24.92■■□□□ 1.58
CCDC43-201ENST00000315286 ARHGEF40Q8TER5 1519 aa24.91■■□□□ 1.58
CCDC43-201ENST00000315286 CLTCQ00610 1675 aaKnown RBP24.91■■□□□ 1.58
CCDC43-201ENST00000315286 TMEM131LA2VDJ0 1609 aa24.91■■□□□ 1.58
CCDC43-201ENST00000315286 ERVK-7P63135 1459 aa24.91■■□□□ 1.58
CCDC43-201ENST00000315286 TRAK1Q9UPV9 953 aa24.9■■□□□ 1.58
CCDC43-201ENST00000315286 KDM5AP29375 1690 aaKnown RBP24.9■■□□□ 1.58
CCDC43-201ENST00000315286 MLECQ14165 292 aa24.9■■□□□ 1.58
CCDC43-201ENST00000315286 NLRP13Q86W25 1043 aa24.9■■□□□ 1.58
CCDC43-201ENST00000315286 MYOM1P52179 1685 aa24.89■■□□□ 1.58
CCDC43-201ENST00000315286 CENPJQ9HC77 1338 aaPredicted RBP24.88■■□□□ 1.57
CCDC43-201ENST00000315286 FKBP8Q14318 412 aa24.87■■□□□ 1.57
CCDC43-201ENST00000315286 SBNO2Q9Y2G9 1366 aa24.87■■□□□ 1.57
CCDC43-201ENST00000315286 ZFYVE9O95405 1425 aa24.86■■□□□ 1.57
CCDC43-201ENST00000315286 KNSTRNQ9Y448 316 aa24.85■■□□□ 1.57
CCDC43-201ENST00000315286 LRPPRCP42704 1394 aaKnown RBP24.85■■□□□ 1.57
CCDC43-201ENST00000315286 NEFLP07196 543 aa24.82■■□□□ 1.56
CCDC43-201ENST00000315286 AMER1Q5JTC6 1135 aaPredicted RBP24.82■■□□□ 1.56
CCDC43-201ENST00000315286 QRICH2Q9H0J4 1663 aa24.81■■□□□ 1.56
CCDC43-201ENST00000315286 SENP3Q9H4L4 574 aaPredicted RBP24.79■■□□□ 1.56
CCDC43-201ENST00000315286 SPATA31D1Q6ZQQ2 1576 aa24.79■■□□□ 1.56
CCDC43-201ENST00000315286 STAG3Q9UJ98 1225 aa24.78■■□□□ 1.56
CCDC43-201ENST00000315286 ASXL1Q8IXJ9 1541 aa24.78■■□□□ 1.56
CCDC43-201ENST00000315286 ARHGEF28Q8N1W1 1705 aaKnown RBP24.76■■□□□ 1.55
CCDC43-201ENST00000315286 SENP3-EIF4A1A0A087X0R7 540 aa24.75■■□□□ 1.55
CCDC43-201ENST00000315286 ESF1Q9H501 851 aaKnown RBP24.74■■□□□ 1.55
CCDC43-201ENST00000315286 BCANQ96GW7 911 aa24.73■■□□□ 1.55
CCDC43-201ENST00000315286 ZMYM3Q14202 1370 aa24.73■■□□□ 1.55
CCDC43-201ENST00000315286 NPC1L1Q9UHC9 1359 aa24.73■■□□□ 1.55
CCDC43-201ENST00000315286 CARD14Q9BXL6 1004 aa24.73■■□□□ 1.55
CCDC43-201ENST00000315286 A2ML1A8K2U0 1454 aa24.71■■□□□ 1.55
CCDC43-201ENST00000315286 PPP2R1AP30153 589 aa24.71■■□□□ 1.55
CCDC43-201ENST00000315286 STK26Q9P289 416 aa24.7■■□□□ 1.54
CCDC43-201ENST00000315286 SLC12A5Q9H2X9 1139 aa24.67■■□□□ 1.54
CCDC43-201ENST00000315286 SMG6Q86US8 1419 aaKnown RBP24.67■■□□□ 1.54
CCDC43-201ENST00000315286 ALKQ9UM73 1620 aa24.66■■□□□ 1.54
CCDC43-201ENST00000315286 EVC2Q86UK5 1308 aa24.66■■□□□ 1.54
CCDC43-201ENST00000315286 SAFB2Q14151 953 aaKnown RBP eCLIP24.65■■□□□ 1.54
CCDC43-201ENST00000315286 TULP4Q9NRJ4 1543 aa24.65■■□□□ 1.54
CCDC43-201ENST00000315286 YTHDC2Q9H6S0 1430 aaKnown RBP24.64■■□□□ 1.54
CCDC43-201ENST00000315286 RIMS2Q9UQ26 1411 aa24.64■■□□□ 1.54
CCDC43-201ENST00000315286 PUS7Q96PZ0 661 aaKnown RBP24.63■■□□□ 1.53
CCDC43-201ENST00000315286 NUDCQ9Y266 331 aa24.63■■□□□ 1.53
CCDC43-201ENST00000315286 PTPRMP28827 1452 aa24.62■■□□□ 1.53
CCDC43-201ENST00000315286 IRX6P78412 446 aaPredicted RBP24.62■■□□□ 1.53
CCDC43-201ENST00000315286 INSRP06213 1382 aa24.61■■□□□ 1.53
CCDC43-201ENST00000315286 BLMP54132 1417 aaPredicted RBP24.59■■□□□ 1.53
CCDC43-201ENST00000315286 PRAM1Q96QH2 718 aa24.59■■□□□ 1.53
CCDC43-201ENST00000315286 CABP2Q9NPB3 220 aa24.59■■□□□ 1.53
CCDC43-201ENST00000315286 NSD3Q9BZ95 1437 aa24.59■■□□□ 1.53
CCDC43-201ENST00000315286 ADAMTS8Q9UP79 889 aa24.58■■□□□ 1.53
CCDC43-201ENST00000315286 SALL2Q9Y467 1007 aaPredicted RBP24.58■■□□□ 1.53
CCDC43-201ENST00000315286 TNRQ92752 1358 aa24.57■■□□□ 1.52
CCDC43-201ENST00000315286 POGKQ9P215 609 aa24.57■■□□□ 1.52
CCDC43-201ENST00000315286 TRHP20396 242 aaPredicted RBP24.55■■□□□ 1.52
CCDC43-201ENST00000315286 MINK1Q8N4C8 1332 aaPredicted RBP24.54■■□□□ 1.52
CCDC43-201ENST00000315286 SETD1AO15047 1707 aaKnown RBP24.54■■□□□ 1.52
CCDC43-201ENST00000315286 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms