RNA–Protein interactions for RNA: ENST00000312438.7

CLCF1-201, Transcript of cardiotrophin like cytokine factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCF1, Length 1,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1-201ENST00000312438 CFAP70Q5T0N1 1121 aa23.16■■□□□ 1.3
CLCF1-201ENST00000312438 NRXN1Q9ULB1 1477 aa23.16■■□□□ 1.3
CLCF1-201ENST00000312438 POLR3GLQ9BT43 218 aa23.15■■□□□ 1.3
CLCF1-201ENST00000312438 VGFO15240 615 aaPredicted RBP23.15■■□□□ 1.3
CLCF1-201ENST00000312438 TESK2Q96S53 571 aa23.15■■□□□ 1.3
CLCF1-201ENST00000312438 CFAP65Q6ZU64 1925 aaKnown RBP23.14■■□□□ 1.3
CLCF1-201ENST00000312438 MROH2AA6NES4 1674 aa23.13■■□□□ 1.29
CLCF1-201ENST00000312438 ERVK-7P63135 1459 aa23.13■■□□□ 1.29
CLCF1-201ENST00000312438 POLR1AO95602 1720 aaPredicted RBP23.13■■□□□ 1.29
CLCF1-201ENST00000312438 SCAF11Q99590 1463 aaKnown RBP23.12■■□□□ 1.29
CLCF1-201ENST00000312438 C14orf93Q9H972 538 aaKnown RBP23.11■■□□□ 1.29
CLCF1-201ENST00000312438 TMF1P82094 1093 aa23.1■■□□□ 1.29
CLCF1-201ENST00000312438 ZMYM3Q14202 1370 aa23.1■■□□□ 1.29
CLCF1-201ENST00000312438 PREX1Q8TCU6 1659 aa23.1■■□□□ 1.29
CLCF1-201ENST00000312438 KIAA1210Q9ULL0 1709 aa23.1■■□□□ 1.29
CLCF1-201ENST00000312438 IFT172Q9UG01 1749 aa23.09■■□□□ 1.29
CLCF1-201ENST00000312438 EIF3AQ14152 1382 aaKnown RBP23.08■■□□□ 1.28
CLCF1-201ENST00000312438 PIK3C2GO75747 1445 aa23.07■■□□□ 1.28
CLCF1-201ENST00000312438 CLTCQ00610 1675 aaKnown RBP23.07■■□□□ 1.28
CLCF1-201ENST00000312438 SLC24A1O60721 1099 aa23.07■■□□□ 1.28
CLCF1-201ENST00000312438 STAG3Q9UJ98 1225 aa23.06■■□□□ 1.28
CLCF1-201ENST00000312438 ZFYVE9O95405 1425 aa23.05■■□□□ 1.28
CLCF1-201ENST00000312438 PRKRIP1Q9H875 184 aaPredicted RBP23.05■■□□□ 1.28
CLCF1-201ENST00000312438 SPATA31D1Q6ZQQ2 1576 aa23.04■■□□□ 1.28
CLCF1-201ENST00000312438 PPLO60437 1756 aa23.03■■□□□ 1.28
CLCF1-201ENST00000312438 NEXMIFQ5QGS0 1516 aa23.03■■□□□ 1.28
CLCF1-201ENST00000312438 CDCA8Q53HL2 280 aa23.02■■□□□ 1.28
CLCF1-201ENST00000312438 NUTM2DQ5VT03 806 aaPredicted RBP23.02■■□□□ 1.28
CLCF1-201ENST00000312438 DISP3Q9P2K9 1392 aa23.02■■□□□ 1.28
CLCF1-201ENST00000312438 IQGAP1P46940 1657 aa23.01■■□□□ 1.27
CLCF1-201ENST00000312438 TMEM131LA2VDJ0 1609 aa23.01■■□□□ 1.27
CLCF1-201ENST00000312438 SETBP1Q9Y6X0 1596 aa23■■□□□ 1.27
CLCF1-201ENST00000312438 TMEM132EQ6IEE7 984 aa22.95■■□□□ 1.26
CLCF1-201ENST00000312438 A2ML1A8K2U0 1454 aa22.94■■□□□ 1.26
CLCF1-201ENST00000312438 TRAK1Q9UPV9 953 aa22.94■■□□□ 1.26
CLCF1-201ENST00000312438 ADGRB1O14514 1584 aa22.93■■□□□ 1.26
CLCF1-201ENST00000312438 TNRQ92752 1358 aa22.93■■□□□ 1.26
CLCF1-201ENST00000312438 CENPJQ9HC77 1338 aaPredicted RBP22.92■■□□□ 1.26
CLCF1-201ENST00000312438 SBNO2Q9Y2G9 1366 aa22.91■■□□□ 1.26
CLCF1-201ENST00000312438 PER1O15534 1290 aaPredicted RBP22.9■■□□□ 1.26
CLCF1-201ENST00000312438 HDGFP51858 240 aaKnown RBP22.9■■□□□ 1.26
CLCF1-201ENST00000312438 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.89■■□□□ 1.26
CLCF1-201ENST00000312438 PANK3Q9H999 370 aa22.89■■□□□ 1.25
CLCF1-201ENST00000312438 KTN1Q86UP2 1357 aaKnown RBP22.87■■□□□ 1.25
CLCF1-201ENST00000312438 RIMS2Q9UQ26 1411 aa22.87■■□□□ 1.25
CLCF1-201ENST00000312438 RALBP1Q15311 655 aa22.87■■□□□ 1.25
CLCF1-201ENST00000312438 CEBPAP49715 358 aaPredicted RBP22.85■■□□□ 1.25
CLCF1-201ENST00000312438 CCDC184Q52MB2 194 aa22.84■■□□□ 1.25
CLCF1-201ENST00000312438 MRS2Q9HD23 443 aa22.84■■□□□ 1.25
CLCF1-201ENST00000312438 MYO5BQ9ULV0 1848 aa22.84■■□□□ 1.25
CLCF1-201ENST00000312438 CNGB1Q14028 1251 aaPredicted RBP22.83■■□□□ 1.25
CLCF1-201ENST00000312438 MYO3AQ8NEV4 1616 aa22.83■■□□□ 1.24
CLCF1-201ENST00000312438 NLRP1Q9C000 1473 aa22.8■■□□□ 1.24
CLCF1-201ENST00000312438 SENP3Q9H4L4 574 aaPredicted RBP22.8■■□□□ 1.24
CLCF1-201ENST00000312438 PUS7Q96PZ0 661 aaKnown RBP22.79■■□□□ 1.24
CLCF1-201ENST00000312438 STK26Q9P289 416 aa22.79■■□□□ 1.24
CLCF1-201ENST00000312438 TMEM2Q9UHN6 1383 aa22.78■■□□□ 1.24
CLCF1-201ENST00000312438 ALKQ9UM73 1620 aa22.78■■□□□ 1.24
CLCF1-201ENST00000312438 KNSTRNQ9Y448 316 aa22.78■■□□□ 1.24
CLCF1-201ENST00000312438 YTHDC2Q9H6S0 1430 aaKnown RBP22.77■■□□□ 1.23
CLCF1-201ENST00000312438 MYBBP1AQ9BQG0 1328 aaKnown RBP22.76■■□□□ 1.23
CLCF1-201ENST00000312438 ASXL1Q8IXJ9 1541 aa22.75■■□□□ 1.23
CLCF1-201ENST00000312438 EVC2Q86UK5 1308 aa22.75■■□□□ 1.23
CLCF1-201ENST00000312438 PARD3Q8TEW0 1356 aa22.75■■□□□ 1.23
CLCF1-201ENST00000312438 KDM5AP29375 1690 aaKnown RBP22.74■■□□□ 1.23
CLCF1-201ENST00000312438 TMC1Q8TDI8 760 aa22.73■■□□□ 1.23
CLCF1-201ENST00000312438 POGKQ9P215 609 aa22.73■■□□□ 1.23
CLCF1-201ENST00000312438 CC2D1BQ5T0F9 858 aaKnown RBP22.72■■□□□ 1.23
CLCF1-201ENST00000312438 FAM9BQ8IZU0 186 aa22.72■■□□□ 1.23
CLCF1-201ENST00000312438 PLPPR3Q6T4P5 718 aa22.71■■□□□ 1.23
CLCF1-201ENST00000312438 PRAM1Q96QH2 718 aa22.71■■□□□ 1.23
CLCF1-201ENST00000312438 BRD4O60885 1362 aaPredicted RBP22.7■■□□□ 1.22
CLCF1-201ENST00000312438 LRPPRCP42704 1394 aaKnown RBP22.7■■□□□ 1.22
CLCF1-201ENST00000312438 FER1L4A9Z1Z3 1794 aa22.7■■□□□ 1.22
CLCF1-201ENST00000312438 C3P01024 1663 aa22.7■■□□□ 1.22
CLCF1-201ENST00000312438 NLRP13Q86W25 1043 aa22.69■■□□□ 1.22
CLCF1-201ENST00000312438 ABCC11Q96J66 1382 aa22.69■■□□□ 1.22
CLCF1-201ENST00000312438 QRICH2Q9H0J4 1663 aa22.69■■□□□ 1.22
CLCF1-201ENST00000312438 SAFB2Q14151 953 aaKnown RBP eCLIP22.68■■□□□ 1.22
CLCF1-201ENST00000312438 AMER1Q5JTC6 1135 aaPredicted RBP22.68■■□□□ 1.22
CLCF1-201ENST00000312438 THEMISQ8N1K5 641 aaPredicted RBP22.68■■□□□ 1.22
CLCF1-201ENST00000312438 BCANQ96GW7 911 aa22.68■■□□□ 1.22
CLCF1-201ENST00000312438 EID1Q9Y6B2 187 aa22.68■■□□□ 1.22
CLCF1-201ENST00000312438 PTPRMP28827 1452 aa22.68■■□□□ 1.22
CLCF1-201ENST00000312438 UBR1Q8IWV7 1749 aa22.68■■□□□ 1.22
CLCF1-201ENST00000312438 TXNDC2Q86VQ3 553 aa22.68■■□□□ 1.22
CLCF1-201ENST00000312438 ARHGEF28Q8N1W1 1705 aaKnown RBP22.67■■□□□ 1.22
CLCF1-201ENST00000312438 NPC1L1Q9UHC9 1359 aa22.67■■□□□ 1.22
CLCF1-201ENST00000312438 HNRNPUQ00839 825 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLCF1-201ENST00000312438 SCAF1Q9H7N4 1312 aaKnown RBP22.67■■□□□ 1.22
CLCF1-201ENST00000312438 LTKP29376 864 aa22.66■■□□□ 1.22
CLCF1-201ENST00000312438 PNISRQ8TF01 805 aaKnown RBP22.66■■□□□ 1.22
CLCF1-201ENST00000312438 SLC12A5Q9H2X9 1139 aa22.65■■□□□ 1.22
CLCF1-201ENST00000312438 SIRT1Q96EB6 747 aa22.64■■□□□ 1.22
CLCF1-201ENST00000312438 CARD14Q9BXL6 1004 aa22.64■■□□□ 1.22
CLCF1-201ENST00000312438 GTF3C3Q9Y5Q9 886 aa22.64■■□□□ 1.22
CLCF1-201ENST00000312438 METP08581 1390 aa22.64■■□□□ 1.22
CLCF1-201ENST00000312438 PLEKHG1Q9ULL1 1385 aa22.63■■□□□ 1.21
CLCF1-201ENST00000312438 DLC1Q96QB1 1528 aa22.63■■□□□ 1.21
CLCF1-201ENST00000312438 MYOM1P52179 1685 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms