RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 NLRP2Q9NX02 1062 aa11.94□□□□□ -0.5
PTPRE-202ENST00000306042 OS9Q13438 667 aaPredicted RBP11.94□□□□□ -0.5
PTPRE-202ENST00000306042 NAIPQ13075 1403 aa11.94□□□□□ -0.5
PTPRE-202ENST00000306042 SYTL4Q96C24 671 aaPredicted RBP11.94□□□□□ -0.5
PTPRE-202ENST00000306042 RAPGEF4Q8WZA2 1011 aa11.93□□□□□ -0.5
PTPRE-202ENST00000306042 GOLGA2Q08379 1002 aa11.93□□□□□ -0.5
PTPRE-202ENST00000306042 STK31Q9BXU1 1019 aa11.92□□□□□ -0.5
PTPRE-202ENST00000306042 IRX6P78412 446 aaPredicted RBP11.92□□□□□ -0.5
PTPRE-202ENST00000306042 NBPF1Q3BBV0 1214 aa11.92□□□□□ -0.5
PTPRE-202ENST00000306042 CDK19Q9BWU1 502 aa11.92□□□□□ -0.5
PTPRE-202ENST00000306042 SYCP2Q9BX26 1530 aa11.92□□□□□ -0.5
PTPRE-202ENST00000306042 KDM5BQ9UGL1 1544 aa11.92□□□□□ -0.5
PTPRE-202ENST00000306042 TEFQ10587 303 aa11.92□□□□□ -0.5
PTPRE-202ENST00000306042 TRAPPC8Q9Y2L5 1435 aa11.92□□□□□ -0.5
PTPRE-202ENST00000306042 CCER2I3L3R5 266 aa11.91□□□□□ -0.5
PTPRE-202ENST00000306042 MSH5O43196 834 aa11.91□□□□□ -0.5
PTPRE-202ENST00000306042 USP35Q9P2H5 1018 aa11.91□□□□□ -0.5
PTPRE-202ENST00000306042 RTEL1-TNFRSF6BF6WH68 1400 aa11.91□□□□□ -0.5
PTPRE-202ENST00000306042 GGNBP2Q9H3C7 697 aa11.91□□□□□ -0.5
PTPRE-202ENST00000306042 AMOTL2Q9Y2J4 779 aa11.91□□□□□ -0.5
PTPRE-202ENST00000306042 HSP90AA1P07900 732 aaKnown RBP11.9□□□□□ -0.5
PTPRE-202ENST00000306042 ZNF692Q9BU19 519 aaPredicted RBP11.9□□□□□ -0.5
PTPRE-202ENST00000306042 DIAPH1O60610 1272 aaKnown RBP11.9□□□□□ -0.5
PTPRE-202ENST00000306042 STRN4Q9NRL3 753 aa11.9□□□□□ -0.5
PTPRE-202ENST00000306042 HSPA2P54652 639 aa11.89□□□□□ -0.51
PTPRE-202ENST00000306042 GTF2E1P29083 439 aaPredicted RBP11.89□□□□□ -0.51
PTPRE-202ENST00000306042 CCDC146Q8IYE0 955 aa11.89□□□□□ -0.51
PTPRE-202ENST00000306042 FAM135AQ9P2D6 1515 aa11.89□□□□□ -0.51
PTPRE-202ENST00000306042 TTC5Q8N0Z6 440 aa11.89□□□□□ -0.51
PTPRE-202ENST00000306042 ITSN2Q9NZM3 1697 aa11.89□□□□□ -0.51
PTPRE-202ENST00000306042 CABP1Q9NZU7 370 aa11.88□□□□□ -0.51
PTPRE-202ENST00000306042 PRDM11Q9NQV5 511 aa11.88□□□□□ -0.51
PTPRE-202ENST00000306042 CHD1O14646 1710 aa11.88□□□□□ -0.51
PTPRE-202ENST00000306042 IPO8O15397 1037 aaKnown RBP11.87□□□□□ -0.51
PTPRE-202ENST00000306042 XPCQ01831 940 aaPredicted RBP11.87□□□□□ -0.51
PTPRE-202ENST00000306042 MYBBP1AQ9BQG0 1328 aaKnown RBP11.87□□□□□ -0.51
PTPRE-202ENST00000306042 RBM33Q96EV2 1170 aaKnown RBP11.87□□□□□ -0.51
PTPRE-202ENST00000306042 UHRF1BP1LA0JNW5 1464 aa11.87□□□□□ -0.51
PTPRE-202ENST00000306042 WAPLQ7Z5K2 1190 aa11.86□□□□□ -0.51
PTPRE-202ENST00000306042 DUOX2Q9NRD8 1548 aa11.86□□□□□ -0.51
PTPRE-202ENST00000306042 TOM1O60784 492 aa11.86□□□□□ -0.51
PTPRE-202ENST00000306042 WASHC2AQ641Q2 1341 aa11.85□□□□□ -0.51
PTPRE-202ENST00000306042 UBAP1LF5GYI3 381 aa11.85□□□□□ -0.51
PTPRE-202ENST00000306042 CCDC61Q9Y6R9 512 aa11.85□□□□□ -0.51
PTPRE-202ENST00000306042 CADPS2Q86UW7 1296 aa11.84□□□□□ -0.51
PTPRE-202ENST00000306042 ZMYM3Q14202 1370 aa11.84□□□□□ -0.51
PTPRE-202ENST00000306042 ATP10AO60312 1499 aa11.84□□□□□ -0.51
PTPRE-202ENST00000306042 NUDT16Q96DE0 195 aaKnown RBP11.84□□□□□ -0.51
PTPRE-202ENST00000306042 SLC12A5Q9H2X9 1139 aa11.84□□□□□ -0.51
PTPRE-202ENST00000306042 ANP32AP39687 249 aaKnown RBP11.84□□□□□ -0.51
PTPRE-202ENST00000306042 RTL5Q5HYW3 569 aaPredicted RBP11.84□□□□□ -0.51
PTPRE-202ENST00000306042 RRP7AQ9Y3A4 280 aaKnown RBP11.84□□□□□ -0.51
PTPRE-202ENST00000306042 CNTLNQ9NXG0 1405 aa11.83□□□□□ -0.51
PTPRE-202ENST00000306042 TOM1L2Q6ZVM7 507 aa11.83□□□□□ -0.52
PTPRE-202ENST00000306042 NEO1Q92859 1461 aa11.83□□□□□ -0.52
PTPRE-202ENST00000306042 ATAD2Q6PL18 1390 aa11.83□□□□□ -0.52
PTPRE-202ENST00000306042 SUPT16HQ9Y5B9 1047 aaKnown RBP11.82□□□□□ -0.52
PTPRE-202ENST00000306042 HDAC5Q9UQL6 1122 aa11.82□□□□□ -0.52
PTPRE-202ENST00000306042 ADGRF5Q8IZF2 1346 aa11.82□□□□□ -0.52
PTPRE-202ENST00000306042 KIF7Q2M1P5 1343 aa11.81□□□□□ -0.52
PTPRE-202ENST00000306042 FOXO3O43524 673 aa11.81□□□□□ -0.52
PTPRE-202ENST00000306042 NBPF8Q3BBV2 869 aa11.81□□□□□ -0.52
PTPRE-202ENST00000306042 MSH6P52701 1360 aa11.81□□□□□ -0.52
PTPRE-202ENST00000306042 TAF7LQ5H9L4 462 aa11.81□□□□□ -0.52
PTPRE-202ENST00000306042 CHMP3Q9Y3E7 222 aa11.81□□□□□ -0.52
PTPRE-202ENST00000306042 SMG6Q86US8 1419 aaKnown RBP11.81□□□□□ -0.52
PTPRE-202ENST00000306042 PHF8Q9UPP1 1060 aa11.81□□□□□ -0.52
PTPRE-202ENST00000306042 CASC1Q6TDU7 716 aa11.8□□□□□ -0.52
PTPRE-202ENST00000306042 NOS1P29475 1434 aa11.8□□□□□ -0.52
PTPRE-202ENST00000306042 UHRF1BP1Q6BDS2 1440 aa11.8□□□□□ -0.52
PTPRE-202ENST00000306042 HMOX1P09601 288 aa11.8□□□□□ -0.52
PTPRE-202ENST00000306042 SMC4Q9NTJ3 1288 aa11.8□□□□□ -0.52
PTPRE-202ENST00000306042 ZC3H6P61129 1189 aaKnown RBP11.79□□□□□ -0.52
PTPRE-202ENST00000306042 NCKAP5LQ9HCH0 1330 aa11.79□□□□□ -0.52
PTPRE-202ENST00000306042 G3V3G9 751 aa11.79□□□□□ -0.52
PTPRE-202ENST00000306042 DCAF8Q5TAQ9 597 aa11.79□□□□□ -0.52
PTPRE-202ENST00000306042 SLC4A10Q6U841 1118 aa11.79□□□□□ -0.52
PTPRE-202ENST00000306042 CCDC7Q96M83 1385 aa11.79□□□□□ -0.52
PTPRE-202ENST00000306042 ADAMTS2O95450 1211 aa11.79□□□□□ -0.52
PTPRE-202ENST00000306042 TATP17735 454 aaPredicted RBP11.79□□□□□ -0.52
PTPRE-202ENST00000306042 PRKRIP1Q9H875 184 aaPredicted RBP11.78□□□□□ -0.52
PTPRE-202ENST00000306042 LRPPRCP42704 1394 aaKnown RBP11.78□□□□□ -0.52
PTPRE-202ENST00000306042 ELL2O00472 640 aaPredicted RBP11.78□□□□□ -0.52
PTPRE-202ENST00000306042 PDE3BQ13370 1112 aa11.77□□□□□ -0.52
PTPRE-202ENST00000306042 NGLY1Q96IV0 654 aa11.77□□□□□ -0.52
PTPRE-202ENST00000306042 NGEFQ8N5V2 710 aa11.77□□□□□ -0.53
PTPRE-202ENST00000306042 KCNH5Q8NCM2 988 aa11.77□□□□□ -0.53
PTPRE-202ENST00000306042 MTHFSP49914 203 aa11.77□□□□□ -0.53
PTPRE-202ENST00000306042 PLEKHO1Q53GL0 409 aaPredicted RBP11.77□□□□□ -0.53
PTPRE-202ENST00000306042 EIF2S2P20042 333 aaKnown RBP11.77□□□□□ -0.53
PTPRE-202ENST00000306042 RIPK4P57078 832 aa11.76□□□□□ -0.53
PTPRE-202ENST00000306042 RIMS2Q9UQ26 1411 aa11.76□□□□□ -0.53
PTPRE-202ENST00000306042 SAMD9Q5K651 1589 aa11.76□□□□□ -0.53
PTPRE-202ENST00000306042 WASLO00401 505 aaPredicted RBP11.76□□□□□ -0.53
PTPRE-202ENST00000306042 ITPRIPQ8IWB1 547 aa11.76□□□□□ -0.53
PTPRE-202ENST00000306042 KLHL34Q8N239 644 aa11.76□□□□□ -0.53
PTPRE-202ENST00000306042 C14orf93Q9H972 538 aaKnown RBP11.75□□□□□ -0.53
PTPRE-202ENST00000306042 ZFYVE16Q7Z3T8 1539 aa11.75□□□□□ -0.53
PTPRE-202ENST00000306042 DDX54Q8TDD1 881 aaKnown RBP11.75□□□□□ -0.53
PTPRE-202ENST00000306042 GORABQ5T7V8 394 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms