RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 RPGRIP1LQ68CZ1 1315 aa26.64■■□□□ 1.85
HOXC4-201ENST00000303406 TMF1P82094 1093 aa26.64■■□□□ 1.85
HOXC4-201ENST00000303406 SIGLEC1Q9BZZ2 1709 aa26.63■■□□□ 1.85
HOXC4-201ENST00000303406 SETBP1Q9Y6X0 1596 aa26.63■■□□□ 1.85
HOXC4-201ENST00000303406 TSPOAP1O95153 1857 aa26.61■■□□□ 1.85
HOXC4-201ENST00000303406 DISP3Q9P2K9 1392 aa26.61■■□□□ 1.85
HOXC4-201ENST00000303406 KIF13AQ9H1H9 1805 aa26.61■■□□□ 1.85
HOXC4-201ENST00000303406 SYNMO15061 1565 aa26.61■■□□□ 1.85
HOXC4-201ENST00000303406 MRS2Q9HD23 443 aa26.6■■□□□ 1.85
HOXC4-201ENST00000303406 SLC24A1O60721 1099 aa26.6■■□□□ 1.85
HOXC4-201ENST00000303406 RALBP1Q15311 655 aa26.58■■□□□ 1.85
HOXC4-201ENST00000303406 PPP6R1Q9UPN7 881 aa26.58■■□□□ 1.85
HOXC4-201ENST00000303406 CCDC184Q52MB2 194 aa26.57■■□□□ 1.84
HOXC4-201ENST00000303406 MYO3AQ8NEV4 1616 aa26.56■■□□□ 1.84
HOXC4-201ENST00000303406 CDCA8Q53HL2 280 aa26.55■■□□□ 1.84
HOXC4-201ENST00000303406 ADGRF5Q8IZF2 1346 aa26.55■■□□□ 1.84
HOXC4-201ENST00000303406 PIK3C2GO75747 1445 aa26.54■■□□□ 1.84
HOXC4-201ENST00000303406 PREX1Q8TCU6 1659 aa26.53■■□□□ 1.84
HOXC4-201ENST00000303406 HNRNPUQ00839 825 aaKnown RBP eCLIP26.52■■□□□ 1.84
HOXC4-201ENST00000303406 CFAP65Q6ZU64 1925 aaKnown RBP26.51■■□□□ 1.83
HOXC4-201ENST00000303406 SLC52A1Q9NWF4 448 aa26.51■■□□□ 1.83
HOXC4-201ENST00000303406 PER1O15534 1290 aaPredicted RBP26.5■■□□□ 1.83
HOXC4-201ENST00000303406 ARHGEF40Q8TER5 1519 aa26.5■■□□□ 1.83
HOXC4-201ENST00000303406 BRD4O60885 1362 aaPredicted RBP26.5■■□□□ 1.83
HOXC4-201ENST00000303406 PARD3Q8TEW0 1356 aa26.5■■□□□ 1.83
HOXC4-201ENST00000303406 SBNO2Q9Y2G9 1366 aa26.5■■□□□ 1.83
HOXC4-201ENST00000303406 MYBBP1AQ9BQG0 1328 aaKnown RBP26.49■■□□□ 1.83
HOXC4-201ENST00000303406 NEXMIFQ5QGS0 1516 aa26.49■■□□□ 1.83
HOXC4-201ENST00000303406 ZFYVE9O95405 1425 aa26.48■■□□□ 1.83
HOXC4-201ENST00000303406 CFAP70Q5T0N1 1121 aa26.48■■□□□ 1.83
HOXC4-201ENST00000303406 KDM5AP29375 1690 aaKnown RBP26.46■■□□□ 1.83
HOXC4-201ENST00000303406 C14orf93Q9H972 538 aaKnown RBP26.45■■□□□ 1.83
HOXC4-201ENST00000303406 ADGRB1O14514 1584 aa26.45■■□□□ 1.82
HOXC4-201ENST00000303406 CHGAP10645 457 aaKnown RBP26.44■■□□□ 1.82
HOXC4-201ENST00000303406 ZBED9Q6R2W3 1325 aa26.44■■□□□ 1.82
HOXC4-201ENST00000303406 FAM9BQ8IZU0 186 aa26.43■■□□□ 1.82
HOXC4-201ENST00000303406 TMEM131LA2VDJ0 1609 aa26.42■■□□□ 1.82
HOXC4-201ENST00000303406 ERVK-7P63135 1459 aa26.41■■□□□ 1.82
HOXC4-201ENST00000303406 MYOM1P52179 1685 aa26.4■■□□□ 1.82
HOXC4-201ENST00000303406 VGFO15240 615 aaPredicted RBP26.39■■□□□ 1.82
HOXC4-201ENST00000303406 PANK3Q9H999 370 aa26.39■■□□□ 1.82
HOXC4-201ENST00000303406 SUPT16HQ9Y5B9 1047 aaKnown RBP26.39■■□□□ 1.82
HOXC4-201ENST00000303406 IDI1Q13907 227 aa26.38■■□□□ 1.81
HOXC4-201ENST00000303406 PNISRQ8TF01 805 aaKnown RBP26.38■■□□□ 1.81
HOXC4-201ENST00000303406 LRPPRCP42704 1394 aaKnown RBP26.37■■□□□ 1.81
HOXC4-201ENST00000303406 NLRP13Q86W25 1043 aa26.37■■□□□ 1.81
HOXC4-201ENST00000303406 SPATA31D1Q6ZQQ2 1576 aa26.36■■□□□ 1.81
HOXC4-201ENST00000303406 TMC1Q8TDI8 760 aa26.36■■□□□ 1.81
HOXC4-201ENST00000303406 CLTCQ00610 1675 aaKnown RBP26.36■■□□□ 1.81
HOXC4-201ENST00000303406 NPC1L1Q9UHC9 1359 aa26.34■■□□□ 1.81
HOXC4-201ENST00000303406 INSRP06213 1382 aa26.34■■□□□ 1.81
HOXC4-201ENST00000303406 CENPJQ9HC77 1338 aaPredicted RBP26.32■■□□□ 1.8
HOXC4-201ENST00000303406 MYO5BQ9ULV0 1848 aa26.31■■□□□ 1.8
HOXC4-201ENST00000303406 PHF23Q9BUL5 403 aaPredicted RBP26.31■■□□□ 1.8
HOXC4-201ENST00000303406 QRICH2Q9H0J4 1663 aa26.31■■□□□ 1.8
HOXC4-201ENST00000303406 ASXL1Q8IXJ9 1541 aa26.3■■□□□ 1.8
HOXC4-201ENST00000303406 NEFLP07196 543 aa26.28■■□□□ 1.8
HOXC4-201ENST00000303406 ARHGEF28Q8N1W1 1705 aaKnown RBP26.27■■□□□ 1.8
HOXC4-201ENST00000303406 PUS7Q96PZ0 661 aaKnown RBP26.26■■□□□ 1.79
HOXC4-201ENST00000303406 KNSTRNQ9Y448 316 aa26.26■■□□□ 1.79
HOXC4-201ENST00000303406 CNGB1Q14028 1251 aaPredicted RBP26.24■■□□□ 1.79
HOXC4-201ENST00000303406 AMER1Q5JTC6 1135 aaPredicted RBP26.23■■□□□ 1.79
HOXC4-201ENST00000303406 FBXO31Q5XUX0 539 aaPredicted RBP26.21■■□□□ 1.79
HOXC4-201ENST00000303406 CC2D1BQ5T0F9 858 aaKnown RBP26.2■■□□□ 1.79
HOXC4-201ENST00000303406 TRAK1Q9UPV9 953 aa26.19■■□□□ 1.78
HOXC4-201ENST00000303406 A2ML1A8K2U0 1454 aa26.18■■□□□ 1.78
HOXC4-201ENST00000303406 SMG6Q86US8 1419 aaKnown RBP26.18■■□□□ 1.78
HOXC4-201ENST00000303406 FKBP8Q14318 412 aa26.18■■□□□ 1.78
HOXC4-201ENST00000303406 TMEM132EQ6IEE7 984 aa26.16■■□□□ 1.78
HOXC4-201ENST00000303406 USP32Q8NFA0 1604 aa26.13■■□□□ 1.77
HOXC4-201ENST00000303406 ALKQ9UM73 1620 aa26.13■■□□□ 1.77
HOXC4-201ENST00000303406 BLMP54132 1417 aaPredicted RBP26.13■■□□□ 1.77
HOXC4-201ENST00000303406 ERICH6BQ5W0A0 696 aa26.13■■□□□ 1.77
HOXC4-201ENST00000303406 ZMYM3Q14202 1370 aa26.13■■□□□ 1.77
HOXC4-201ENST00000303406 PELP1Q8IZL8 1130 aaKnown RBP26.12■■□□□ 1.77
HOXC4-201ENST00000303406 TULP4Q9NRJ4 1543 aa26.11■■□□□ 1.77
HOXC4-201ENST00000303406 PPP2R1AP30153 589 aa26.1■■□□□ 1.77
HOXC4-201ENST00000303406 ESF1Q9H501 851 aaKnown RBP26.1■■□□□ 1.77
HOXC4-201ENST00000303406 EVC2Q86UK5 1308 aa26.1■■□□□ 1.77
HOXC4-201ENST00000303406 NUTM2DQ5VT03 806 aaPredicted RBP26.09■■□□□ 1.77
HOXC4-201ENST00000303406 STAG3Q9UJ98 1225 aa26.09■■□□□ 1.77
HOXC4-201ENST00000303406 YTHDC2Q9H6S0 1430 aaKnown RBP26.09■■□□□ 1.77
HOXC4-201ENST00000303406 PTPRMP28827 1452 aa26.09■■□□□ 1.77
HOXC4-201ENST00000303406 DLC1Q96QB1 1528 aa26.09■■□□□ 1.77
HOXC4-201ENST00000303406 NUDCQ9Y266 331 aa26.09■■□□□ 1.77
HOXC4-201ENST00000303406 RIMS2Q9UQ26 1411 aa26.08■■□□□ 1.77
HOXC4-201ENST00000303406 MLECQ14165 292 aa26.08■■□□□ 1.77
HOXC4-201ENST00000303406 NINLQ9Y2I6 1382 aa26.07■■□□□ 1.76
HOXC4-201ENST00000303406 SETD1AO15047 1707 aaKnown RBP26.07■■□□□ 1.76
HOXC4-201ENST00000303406 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.04■■□□□ 1.76
HOXC4-201ENST00000303406 CARD14Q9BXL6 1004 aa26.04■■□□□ 1.76
HOXC4-201ENST00000303406 PDE3BQ13370 1112 aa26.04■■□□□ 1.76
HOXC4-201ENST00000303406 TNRQ92752 1358 aa26.03■■□□□ 1.76
HOXC4-201ENST00000303406 NSD3Q9BZ95 1437 aa26■■□□□ 1.75
HOXC4-201ENST00000303406 ANKRD36BQ8N2N9 1353 aa25.99■■□□□ 1.75
HOXC4-201ENST00000303406 NRXN3Q9Y4C0 1643 aa25.98■■□□□ 1.75
HOXC4-201ENST00000303406 NSD2O96028 1365 aa25.98■■□□□ 1.75
HOXC4-201ENST00000303406 HDGFP51858 240 aaKnown RBP25.98■■□□□ 1.75
HOXC4-201ENST00000303406 SENP3Q9H4L4 574 aaPredicted RBP25.97■■□□□ 1.75
HOXC4-201ENST00000303406 UBR1Q8IWV7 1749 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms