RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 ABCA6Q8N139 1617 aa29.53■■■□□ 2.32
TPM4-201ENST00000300933 PARD3Q8TEW0 1356 aa29.52■■■□□ 2.32
TPM4-201ENST00000300933 NLRP13Q86W25 1043 aa29.52■■■□□ 2.32
TPM4-201ENST00000300933 BRD4O60885 1362 aaPredicted RBP29.51■■■□□ 2.32
TPM4-201ENST00000300933 SCAF11Q99590 1463 aaKnown RBP29.51■■■□□ 2.31
TPM4-201ENST00000300933 FANCIQ9NVI1 1328 aa29.5■■■□□ 2.31
TPM4-201ENST00000300933 CFAP74Q9C0B2 1584 aa29.49■■■□□ 2.31
TPM4-201ENST00000300933 NOS1P29475 1434 aa29.49■■■□□ 2.31
TPM4-201ENST00000300933 YEATS2Q9ULM3 1422 aa29.49■■■□□ 2.31
TPM4-201ENST00000300933 TMEM132EQ6IEE7 984 aa29.48■■■□□ 2.31
TPM4-201ENST00000300933 STAC3Q96MF2 364 aa29.48■■■□□ 2.31
TPM4-201ENST00000300933 MROH2AA6NES4 1674 aa29.47■■■□□ 2.31
TPM4-201ENST00000300933 IQGAP1P46940 1657 aa29.46■■■□□ 2.31
TPM4-201ENST00000300933 KIF1BO60333 1816 aa29.46■■■□□ 2.31
TPM4-201ENST00000300933 TRAK1Q9UPV9 953 aa29.46■■■□□ 2.31
TPM4-201ENST00000300933 NEO1Q92859 1461 aa29.45■■■□□ 2.31
TPM4-201ENST00000300933 KNSTRNQ9Y448 316 aa29.45■■■□□ 2.31
TPM4-201ENST00000300933 LRPPRCP42704 1394 aaKnown RBP29.43■■■□□ 2.3
TPM4-201ENST00000300933 LMTK2Q8IWU2 1503 aa29.42■■■□□ 2.3
TPM4-201ENST00000300933 MAP3K4Q9Y6R4 1608 aa29.41■■■□□ 2.3
TPM4-201ENST00000300933 NUDCQ9Y266 331 aa29.39■■■□□ 2.3
TPM4-201ENST00000300933 ABCC3O15438 1527 aa29.39■■■□□ 2.3
TPM4-201ENST00000300933 EIF3AQ14152 1382 aaKnown RBP29.37■■■□□ 2.29
TPM4-201ENST00000300933 DIP2CQ9Y2E4 1556 aa29.37■■■□□ 2.29
TPM4-201ENST00000300933 CDCA8Q53HL2 280 aa29.37■■■□□ 2.29
TPM4-201ENST00000300933 RIMBP3CA6NJZ7 1639 aa29.36■■■□□ 2.29
TPM4-201ENST00000300933 RIMBP3BA6NNM3 1639 aa29.36■■■□□ 2.29
TPM4-201ENST00000300933 RIMBP3Q9UFD9 1639 aa29.36■■■□□ 2.29
TPM4-201ENST00000300933 IDI1Q13907 227 aa29.36■■■□□ 2.29
TPM4-201ENST00000300933 AMER1Q5JTC6 1135 aaPredicted RBP29.36■■■□□ 2.29
TPM4-201ENST00000300933 MYOM2P54296 1465 aa29.35■■■□□ 2.29
TPM4-201ENST00000300933 B4GALNT3Q6L9W6 998 aa29.35■■■□□ 2.29
TPM4-201ENST00000300933 SMG6Q86US8 1419 aaKnown RBP29.34■■■□□ 2.29
TPM4-201ENST00000300933 TSPOAP1O95153 1857 aa29.34■■■□□ 2.29
TPM4-201ENST00000300933 FBXO31Q5XUX0 539 aaPredicted RBP29.32■■■□□ 2.28
TPM4-201ENST00000300933 ADGRB3O60242 1522 aa29.32■■■□□ 2.28
TPM4-201ENST00000300933 RICTORQ6R327 1708 aa29.31■■■□□ 2.28
TPM4-201ENST00000300933 SIGLEC1Q9BZZ2 1709 aa29.31■■■□□ 2.28
TPM4-201ENST00000300933 PPP2R1AP30153 589 aa29.3■■■□□ 2.28
TPM4-201ENST00000300933 CDCA7LQ96GN5 454 aa29.29■■■□□ 2.28
TPM4-201ENST00000300933 C14orf93Q9H972 538 aaKnown RBP29.29■■■□□ 2.28
TPM4-201ENST00000300933 SAFB2Q14151 953 aaKnown RBP eCLIP29.29■■■□□ 2.28
TPM4-201ENST00000300933 MLECQ14165 292 aa29.28■■■□□ 2.28
TPM4-201ENST00000300933 ADAMTS8Q9UP79 889 aa29.28■■■□□ 2.28
TPM4-201ENST00000300933 IFT172Q9UG01 1749 aa29.28■■■□□ 2.28
TPM4-201ENST00000300933 CARD14Q9BXL6 1004 aa29.28■■■□□ 2.28
TPM4-201ENST00000300933 ERVK-7P63135 1459 aa29.27■■■□□ 2.28
TPM4-201ENST00000300933 CENPJQ9HC77 1338 aaPredicted RBP29.27■■■□□ 2.28
TPM4-201ENST00000300933 CAMSAP1Q5T5Y3 1602 aa29.26■■■□□ 2.28
TPM4-201ENST00000300933 PPP4R2Q9NY27 417 aa29.26■■■□□ 2.27
TPM4-201ENST00000300933 NEURL4Q96JN8 1562 aa29.26■■■□□ 2.27
TPM4-201ENST00000300933 NRXN1Q9ULB1 1477 aa29.24■■■□□ 2.27
TPM4-201ENST00000300933 KIAA1210Q9ULL0 1709 aa29.24■■■□□ 2.27
TPM4-201ENST00000300933 PIK3C2GO75747 1445 aa29.23■■■□□ 2.27
TPM4-201ENST00000300933 STK26Q9P289 416 aa29.23■■■□□ 2.27
TPM4-201ENST00000300933 SYNMO15061 1565 aa29.22■■■□□ 2.27
TPM4-201ENST00000300933 SLC12A5Q9H2X9 1139 aa29.22■■■□□ 2.27
TPM4-201ENST00000300933 MYOM1P52179 1685 aa29.19■■■□□ 2.26
TPM4-201ENST00000300933 PPLO60437 1756 aa29.19■■■□□ 2.26
TPM4-201ENST00000300933 VGFO15240 615 aaPredicted RBP29.18■■■□□ 2.26
TPM4-201ENST00000300933 TNNT2P45379 298 aaPredicted RBP29.18■■■□□ 2.26
TPM4-201ENST00000300933 RPGRIP1LQ68CZ1 1315 aa29.17■■■□□ 2.26
TPM4-201ENST00000300933 KDM5AP29375 1690 aaKnown RBP29.16■■■□□ 2.26
TPM4-201ENST00000300933 DIP2BQ9P265 1576 aa29.16■■■□□ 2.26
TPM4-201ENST00000300933 ASXL1Q8IXJ9 1541 aa29.16■■■□□ 2.26
TPM4-201ENST00000300933 DEKP35659 375 aaKnown RBP29.16■■■□□ 2.26
TPM4-201ENST00000300933 WDR43Q15061 677 aaKnown RBP eCLIP29.15■■■□□ 2.261e-6■□□□□ 11.1
TPM4-201ENST00000300933 GLI2P10070 1586 aa29.14■■■□□ 2.26
TPM4-201ENST00000300933 CCDC146Q8IYE0 955 aa29.13■■■□□ 2.25
TPM4-201ENST00000300933 ERICH6BQ5W0A0 696 aa29.12■■■□□ 2.25
TPM4-201ENST00000300933 ADGRB1O14514 1584 aa29.12■■■□□ 2.25
TPM4-201ENST00000300933 SLC52A1Q9NWF4 448 aa29.11■■■□□ 2.25
TPM4-201ENST00000300933 STAG3Q9UJ98 1225 aa29.11■■■□□ 2.25
TPM4-201ENST00000300933 RNF123Q5XPI4 1314 aa29.09■■■□□ 2.25
TPM4-201ENST00000300933 CABP2Q9NPB3 220 aa29.09■■■□□ 2.25
TPM4-201ENST00000300933 RCAN3Q9UKA8 241 aa29.08■■■□□ 2.25
TPM4-201ENST00000300933 ARHGAP31Q2M1Z3 1444 aa29.08■■■□□ 2.25
TPM4-201ENST00000300933 NBR1Q14596 966 aa29.08■■■□□ 2.25
TPM4-201ENST00000300933 NEXMIFQ5QGS0 1516 aa29.07■■■□□ 2.24
TPM4-201ENST00000300933 SLC24A1O60721 1099 aa29.07■■■□□ 2.24
TPM4-201ENST00000300933 PIK3C2BO00750 1634 aa29.07■■■□□ 2.24
TPM4-201ENST00000300933 BLMP54132 1417 aaPredicted RBP29.06■■■□□ 2.24
TPM4-201ENST00000300933 MYO5BQ9ULV0 1848 aa29.06■■■□□ 2.24
TPM4-201ENST00000300933 SETBP1Q9Y6X0 1596 aa29.05■■■□□ 2.24
TPM4-201ENST00000300933 PLIN1O60240 522 aa29.04■■■□□ 2.24
TPM4-201ENST00000300933 SBNO2Q9Y2G9 1366 aa29.03■■■□□ 2.24
TPM4-201ENST00000300933 NSD3Q9BZ95 1437 aa29.03■■■□□ 2.24
TPM4-201ENST00000300933 QRICH2Q9H0J4 1663 aa29.02■■■□□ 2.24
TPM4-201ENST00000300933 RRP1P56182 461 aaKnown RBP29.01■■■□□ 2.23
TPM4-201ENST00000300933 CCDC136Q96JN2 1154 aa29■■■□□ 2.23
TPM4-201ENST00000300933 PLEKHH1Q9ULM0 1364 aa29■■■□□ 2.23
TPM4-201ENST00000300933 PDE3BQ13370 1112 aa29■■■□□ 2.23
TPM4-201ENST00000300933 MINK1Q8N4C8 1332 aaPredicted RBP29■■■□□ 2.23
TPM4-201ENST00000300933 PAK3O75914 559 aaPredicted RBP28.99■■■□□ 2.23
TPM4-201ENST00000300933 MORC1Q86VD1 984 aa28.99■■■□□ 2.23
TPM4-201ENST00000300933 NOP58Q9Y2X3 529 aaKnown RBP28.99■■■□□ 2.23
TPM4-201ENST00000300933 PREX1Q8TCU6 1659 aa28.99■■■□□ 2.23
TPM4-201ENST00000300933 MYO3AQ8NEV4 1616 aa28.99■■■□□ 2.23
TPM4-201ENST00000300933 NPC1L1Q9UHC9 1359 aa28.98■■■□□ 2.23
TPM4-201ENST00000300933 EXOC6Q8TAG9 804 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms