RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 NCOA2Q15596 1464 aa16.75■□□□□ 0.27
HPS3-201ENST00000296051 IPO8O15397 1037 aaKnown RBP16.75■□□□□ 0.27
HPS3-201ENST00000296051 C20orf194Q5TEA3 1177 aa16.75■□□□□ 0.27
HPS3-201ENST00000296051 BCAR3O75815 825 aa16.75■□□□□ 0.27
HPS3-201ENST00000296051 NGEFQ8N5V2 710 aa16.74■□□□□ 0.27
HPS3-201ENST00000296051 SMG6Q86US8 1419 aaKnown RBP16.74■□□□□ 0.27
HPS3-201ENST00000296051 E9PSI1 815 aa16.74■□□□□ 0.27
HPS3-201ENST00000296051 CGNL1Q0VF96 1302 aa16.74■□□□□ 0.27
HPS3-201ENST00000296051 TEFQ10587 303 aa16.73■□□□□ 0.27
HPS3-201ENST00000296051 C1orf141Q5JVX7 400 aa16.73■□□□□ 0.27
HPS3-201ENST00000296051 CHMP4AQ9BY43 222 aa16.73■□□□□ 0.27
HPS3-201ENST00000296051 DDX49Q9Y6V7 483 aaKnown RBP16.73■□□□□ 0.27
HPS3-201ENST00000296051 BICRAQ9NZM4 1560 aa16.73■□□□□ 0.27
HPS3-201ENST00000296051 ZRSR1Q15695 479 aaKnown RBP16.72■□□□□ 0.27
HPS3-201ENST00000296051 CUX1P39880 1505 aa16.72■□□□□ 0.27
HPS3-201ENST00000296051 MRC2Q9UBG0 1479 aa16.71■□□□□ 0.27
HPS3-201ENST00000296051 BRD4O60885 1362 aaPredicted RBP16.71■□□□□ 0.27
HPS3-201ENST00000296051 ANKRD45Q5TZF3 282 aa16.7■□□□□ 0.26
HPS3-201ENST00000296051 NLRP2Q9NX02 1062 aa16.69■□□□□ 0.26
HPS3-201ENST00000296051 ERICH3Q5RHP9 1530 aa16.69■□□□□ 0.26
HPS3-201ENST00000296051 PIP4K2BP78356 416 aa16.69■□□□□ 0.26
HPS3-201ENST00000296051 SLC26A8Q96RN1 970 aa16.69■□□□□ 0.26
HPS3-201ENST00000296051 HFM1A2PYH4 1435 aa16.69■□□□□ 0.26
HPS3-201ENST00000296051 THEMISQ8N1K5 641 aaPredicted RBP16.68■□□□□ 0.26
HPS3-201ENST00000296051 NUTM2BA6NNL0 878 aaPredicted RBP16.67■□□□□ 0.26
HPS3-201ENST00000296051 NUTM2EB1AL46 878 aaPredicted RBP16.67■□□□□ 0.26
HPS3-201ENST00000296051 ESCO1Q5FWF5 840 aa16.67■□□□□ 0.26
HPS3-201ENST00000296051 NUTM2AQ8IVF1 878 aaPredicted RBP16.67■□□□□ 0.26
HPS3-201ENST00000296051 NLRP6P59044 892 aa16.67■□□□□ 0.26
HPS3-201ENST00000296051 LNPKQ9C0E8 428 aa16.67■□□□□ 0.26
HPS3-201ENST00000296051 NAIPQ13075 1403 aa16.67■□□□□ 0.26
HPS3-201ENST00000296051 CASKIN1Q8WXD9 1431 aa16.67■□□□□ 0.26
HPS3-201ENST00000296051 CHMP5Q9NZZ3 219 aa16.67■□□□□ 0.26
HPS3-201ENST00000296051 TIAM1Q13009 1591 aa16.67■□□□□ 0.26
HPS3-201ENST00000296051 DDX11L8A8MPP1 907 aa16.66■□□□□ 0.26
HPS3-201ENST00000296051 ZKSCAN2Q63HK3 967 aa16.66■□□□□ 0.26
HPS3-201ENST00000296051 TTC5Q8N0Z6 440 aa16.66■□□□□ 0.26
HPS3-201ENST00000296051 FAM13BQ9NYF5 915 aa16.66■□□□□ 0.26
HPS3-201ENST00000296051 SCAPERQ9BY12 1400 aa16.66■□□□□ 0.26
HPS3-201ENST00000296051 C22orf23Q9BZE7 217 aa16.66■□□□□ 0.26
HPS3-201ENST00000296051 POLA1P09884 1462 aaPredicted RBP16.65■□□□□ 0.26
HPS3-201ENST00000296051 LMOD3Q0VAK6 560 aa16.65■□□□□ 0.26
HPS3-201ENST00000296051 EIF2S2P20042 333 aaKnown RBP16.64■□□□□ 0.25
HPS3-201ENST00000296051 RAPGEF4Q8WZA2 1011 aa16.64■□□□□ 0.25
HPS3-201ENST00000296051 TOPBP1Q92547 1522 aa16.63■□□□□ 0.25
HPS3-201ENST00000296051 TRAK2O60296 914 aa16.63■□□□□ 0.25
HPS3-201ENST00000296051 IFT140Q96RY7 1462 aa16.63■□□□□ 0.25
HPS3-201ENST00000296051 MAPKBP1O60336 1514 aa16.63■□□□□ 0.25
HPS3-201ENST00000296051 SYNJ2O15056 1496 aa16.62■□□□□ 0.25
HPS3-201ENST00000296051 PPP2R1AP30153 589 aa16.62■□□□□ 0.25
HPS3-201ENST00000296051 DRC7Q8IY82 874 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 CABP2Q9NPB3 220 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 NECTIN2Q92692 538 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 PRDM2Q13029 1718 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 KIAA2012Q0VF49 1180 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 CFAP70Q5T0N1 1121 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 DZIP1LQ8IYY4 767 aaKnown RBP16.61■□□□□ 0.25
HPS3-201ENST00000296051 STRN4Q9NRL3 753 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 PDZRN3Q9UPQ7 1066 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 GOLGA6L4A6NEF3 574 aa16.61■□□□□ 0.25
HPS3-201ENST00000296051 ANKLE2Q86XL3 938 aa16.6■□□□□ 0.25
HPS3-201ENST00000296051 KIAA1211Q6ZU35 1233 aa16.6■□□□□ 0.25
HPS3-201ENST00000296051 FAM43AQ8N2R8 423 aa16.6■□□□□ 0.25
HPS3-201ENST00000296051 GGNBP2Q9H3C7 697 aa16.6■□□□□ 0.25
HPS3-201ENST00000296051 HDAC5Q9UQL6 1122 aa16.6■□□□□ 0.25
HPS3-201ENST00000296051 CHAF1AQ13111 956 aaPredicted RBP16.59■□□□□ 0.25
HPS3-201ENST00000296051 ABTB2Q8N961 1025 aa16.59■□□□□ 0.25
HPS3-201ENST00000296051 ARHGAP5Q13017 1502 aa16.59■□□□□ 0.25
HPS3-201ENST00000296051 SNAPC4Q5SXM2 1469 aa16.58■□□□□ 0.25
HPS3-201ENST00000296051 ANKRD50Q9ULJ7 1429 aa16.58■□□□□ 0.25
HPS3-201ENST00000296051 TRIM6-TRIM34B2RNG4 842 aa16.58■□□□□ 0.24
HPS3-201ENST00000296051 CLSTN1O94985 981 aa16.57■□□□□ 0.24
HPS3-201ENST00000296051 MCCP23508 829 aa16.57■□□□□ 0.24
HPS3-201ENST00000296051 TCP11L2Q8N4U5 519 aa16.56■□□□□ 0.24
HPS3-201ENST00000296051 DIAPH1O60610 1272 aaKnown RBP16.55■□□□□ 0.24
HPS3-201ENST00000296051 FYCO1Q9BQS8 1478 aa16.55■□□□□ 0.24
HPS3-201ENST00000296051 TOMM22Q9NS69 142 aa16.55■□□□□ 0.24
HPS3-201ENST00000296051 TOP2BQ02880 1626 aa16.55■□□□□ 0.24
HPS3-201ENST00000296051 PTMSP20962 102 aa16.54■□□□□ 0.24
HPS3-201ENST00000296051 MRE11P49959 708 aa16.54■□□□□ 0.24
HPS3-201ENST00000296051 HMOX1P09601 288 aa16.54■□□□□ 0.24
HPS3-201ENST00000296051 NCBP3Q53F19 620 aaKnown RBP16.54■□□□□ 0.24
HPS3-201ENST00000296051 RBM10P98175 930 aaKnown RBP16.53■□□□□ 0.24
HPS3-201ENST00000296051 MCTP1Q6DN14 999 aa16.53■□□□□ 0.24
HPS3-201ENST00000296051 PPP1R1BQ9UD71 204 aaPredicted RBP16.53■□□□□ 0.24
HPS3-201ENST00000296051 RNF214Q8ND24 703 aa16.53■□□□□ 0.24
HPS3-201ENST00000296051 GPRASP1Q5JY77 1395 aa16.53■□□□□ 0.24
HPS3-201ENST00000296051 HMMRO75330 724 aa16.53■□□□□ 0.24
HPS3-201ENST00000296051 MPNDQ8N594 471 aa16.52■□□□□ 0.24
HPS3-201ENST00000296051 R3HCC1Q9Y3T6 440 aaKnown RBP16.52■□□□□ 0.24
HPS3-201ENST00000296051 DDX19BQ9UMR2 479 aa16.52■□□□□ 0.24
HPS3-201ENST00000296051 CEBPAP49715 358 aaPredicted RBP16.52■□□□□ 0.23
HPS3-201ENST00000296051 TSR2Q969E8 191 aaKnown RBP16.52■□□□□ 0.23
HPS3-201ENST00000296051 PRAM1Q96QH2 718 aa16.52■□□□□ 0.23
HPS3-201ENST00000296051 XPCQ01831 940 aaPredicted RBP16.52■□□□□ 0.23
HPS3-201ENST00000296051 HMGXB3Q12766 1538 aa16.52■□□□□ 0.23
HPS3-201ENST00000296051 NCOA1Q15788 1441 aa16.52■□□□□ 0.23
HPS3-201ENST00000296051 ST18O60284 1047 aa16.51■□□□□ 0.23
HPS3-201ENST00000296051 NEXNQ0ZGT2 675 aa16.51■□□□□ 0.23
HPS3-201ENST00000296051 GNL2Q13823 731 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms