RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CDK13Q14004 1512 aaKnown RBP12.2□□□□□ -0.46
COL6A3-201ENST00000295550 TEX35Q5T0J7 233 aa12.2□□□□□ -0.46
COL6A3-201ENST00000295550 MAPKBP1O60336 1514 aa12.19□□□□□ -0.46
COL6A3-201ENST00000295550 CCDC70Q6NSX1 233 aa12.19□□□□□ -0.46
COL6A3-201ENST00000295550 SMC4Q9NTJ3 1288 aa12.19□□□□□ -0.46
COL6A3-201ENST00000295550 PLEKHH2Q8IVE3 1493 aa12.19□□□□□ -0.46
COL6A3-201ENST00000295550 TROQ12816 1431 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-201ENST00000295550 RASSF8Q8NHQ8 419 aa12.18□□□□□ -0.46
COL6A3-201ENST00000295550 SAFB2Q14151 953 aaKnown RBP eCLIP12.18□□□□□ -0.46
COL6A3-201ENST00000295550 KIF16BQ96L93 1317 aa12.18□□□□□ -0.46
COL6A3-201ENST00000295550 FOXD4L1Q9NU39 408 aa12.18□□□□□ -0.46
COL6A3-201ENST00000295550 KIF3BO15066 747 aa12.18□□□□□ -0.46
COL6A3-201ENST00000295550 ZNF644Q9H582 1327 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-201ENST00000295550 CAMSAP2Q08AD1 1489 aa12.17□□□□□ -0.46
COL6A3-201ENST00000295550 LMOD2Q6P5Q4 547 aa12.17□□□□□ -0.46
COL6A3-201ENST00000295550 CRBNQ96SW2 442 aa12.17□□□□□ -0.46
COL6A3-201ENST00000295550 STAC3Q96MF2 364 aa12.17□□□□□ -0.46
COL6A3-201ENST00000295550 CEP89Q96ST8 783 aa12.16□□□□□ -0.46
COL6A3-201ENST00000295550 NOM1Q5C9Z4 860 aaKnown RBP12.16□□□□□ -0.46
COL6A3-201ENST00000295550 NOL8Q76FK4 1167 aaKnown RBP12.16□□□□□ -0.46
COL6A3-201ENST00000295550 SCAPERQ9BY12 1400 aa12.16□□□□□ -0.46
COL6A3-201ENST00000295550 ST18O60284 1047 aa12.16□□□□□ -0.46
COL6A3-201ENST00000295550 TRIM6-TRIM34B2RNG4 842 aa12.15□□□□□ -0.46
COL6A3-201ENST00000295550 GGT6Q6P531 493 aa12.15□□□□□ -0.46
COL6A3-201ENST00000295550 FOXD4L5Q5VV16 416 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-201ENST00000295550 FOXD4L4Q8WXT5 416 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-201ENST00000295550 LMOD3Q0VAK6 560 aa12.15□□□□□ -0.46
COL6A3-201ENST00000295550 AAMPQ13685 434 aa12.15□□□□□ -0.47
COL6A3-201ENST00000295550 PLIN1O60240 522 aa12.14□□□□□ -0.47
COL6A3-201ENST00000295550 TSR1Q2NL82 804 aaKnown RBP12.14□□□□□ -0.47
COL6A3-201ENST00000295550 FAM13BQ9NYF5 915 aa12.14□□□□□ -0.47
COL6A3-201ENST00000295550 STK26Q9P289 416 aa12.14□□□□□ -0.47
COL6A3-201ENST00000295550 RRP12Q5JTH9 1297 aaKnown RBP12.14□□□□□ -0.47
COL6A3-201ENST00000295550 AKNAQ7Z591 1439 aa12.14□□□□□ -0.47
COL6A3-201ENST00000295550 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-201ENST00000295550 WASHC2CQ9Y4E1 1318 aa12.13□□□□□ -0.47
COL6A3-201ENST00000295550 PES1O00541 588 aaKnown RBP12.13□□□□□ -0.47
COL6A3-201ENST00000295550 GSE1Q14687 1217 aa12.13□□□□□ -0.47
COL6A3-201ENST00000295550 ZNF592Q92610 1267 aa12.13□□□□□ -0.47
COL6A3-201ENST00000295550 EVC2Q86UK5 1308 aa12.13□□□□□ -0.47
COL6A3-201ENST00000295550 RTF1Q92541 710 aaKnown RBP12.13□□□□□ -0.47
COL6A3-201ENST00000295550 SNAPC4Q5SXM2 1469 aa12.13□□□□□ -0.47
COL6A3-201ENST00000295550 TPM1P09493 284 aa12.12□□□□□ -0.47
COL6A3-201ENST00000295550 GOLGA6L19H0YKK7 550 aa12.12□□□□□ -0.47
COL6A3-201ENST00000295550 NINLQ9Y2I6 1382 aa12.11□□□□□ -0.47
COL6A3-201ENST00000295550 KIAA0586Q9BVV6 1533 aa12.11□□□□□ -0.47
COL6A3-201ENST00000295550 TPD52L1Q16890 204 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-201ENST00000295550 SKOR2Q2VWA4 1001 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-201ENST00000295550 CCDC141Q6ZP82 1450 aa12.11□□□□□ -0.47
COL6A3-201ENST00000295550 HMMRO75330 724 aa12.11□□□□□ -0.47
COL6A3-201ENST00000295550 ZKSCAN2Q63HK3 967 aa12.1□□□□□ -0.47
COL6A3-201ENST00000295550 UGGT2Q9NYU1 1516 aa12.1□□□□□ -0.47
COL6A3-201ENST00000295550 APPP05067 770 aa12.1□□□□□ -0.47
COL6A3-201ENST00000295550 ANO8Q9HCE9 1232 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-201ENST00000295550 NCOA1Q15788 1441 aa12.09□□□□□ -0.47
COL6A3-201ENST00000295550 CLUAP1Q96AJ1 413 aa12.09□□□□□ -0.47
COL6A3-201ENST00000295550 RAPGEF6Q8TEU7 1601 aa12.08□□□□□ -0.47
COL6A3-201ENST00000295550 ERBINQ96RT1 1412 aa12.08□□□□□ -0.48
COL6A3-201ENST00000295550 KIF3AQ9Y496 699 aa12.08□□□□□ -0.48
COL6A3-201ENST00000295550 H3BQV1 296 aa12.08□□□□□ -0.48
COL6A3-201ENST00000295550 IFFO2Q5TF58 517 aa12.08□□□□□ -0.48
COL6A3-201ENST00000295550 PRG4Q92954 1404 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-201ENST00000295550 ATP6V1DQ9Y5K8 247 aa12.08□□□□□ -0.48
COL6A3-201ENST00000295550 RRP7AQ9Y3A4 280 aaKnown RBP12.08□□□□□ -0.48
COL6A3-201ENST00000295550 SF3A1Q15459 793 aaKnown RBP12.07□□□□□ -0.48
COL6A3-201ENST00000295550 CHMP4AQ9BY43 222 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 TAF7LQ5H9L4 462 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 AK7Q96M32 723 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 GCC2Q8IWJ2 1684 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 BECN2A8MW95 431 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 FBXO3Q9UK99 471 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 TPM2P07951 284 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 GORABQ5T7V8 394 aa12.07□□□□□ -0.48
COL6A3-201ENST00000295550 RPRD2Q5VT52 1461 aaKnown RBP12.07□□□□□ -0.48
COL6A3-201ENST00000295550 SOX12O15370 315 aa12.06□□□□□ -0.48
COL6A3-201ENST00000295550 DDX49Q9Y6V7 483 aaKnown RBP12.06□□□□□ -0.48
COL6A3-201ENST00000295550 ANKRD30BQ9BXX2 1392 aa12.06□□□□□ -0.48
COL6A3-201ENST00000295550 DDX19BQ9UMR2 479 aa12.06□□□□□ -0.48
COL6A3-201ENST00000295550 FAM135AQ9P2D6 1515 aa12.06□□□□□ -0.48
COL6A3-201ENST00000295550 STK31Q9BXU1 1019 aa12.06□□□□□ -0.48
COL6A3-201ENST00000295550 CWC15Q9P013 229 aaKnown RBP12.06□□□□□ -0.48
COL6A3-201ENST00000295550 PKNOX2Q96KN3 472 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 RUNDC1Q96C34 613 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 VPS53Q5VIR6 699 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 VGFO15240 615 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-201ENST00000295550 APAF1O14727 1248 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 MAP7D2Q96T17 732 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 TRAK1Q9UPV9 953 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 RUFY1Q96T51 708 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 CHMP3Q9Y3E7 222 aa12.05□□□□□ -0.48
COL6A3-201ENST00000295550 NBPF8Q3BBV2 869 aa12.04□□□□□ -0.48
COL6A3-201ENST00000295550 MAGI1Q96QZ7 1491 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-201ENST00000295550 PBRM1Q86U86 1689 aa12.04□□□□□ -0.48
COL6A3-201ENST00000295550 COG6Q9Y2V7 657 aa12.04□□□□□ -0.48
COL6A3-201ENST00000295550 ADGBQ8N7X0 1667 aa12.04□□□□□ -0.48
COL6A3-201ENST00000295550 HOMER1Q86YM7 354 aa12.03□□□□□ -0.48
COL6A3-201ENST00000295550 FAM43AQ8N2R8 423 aa12.03□□□□□ -0.48
COL6A3-201ENST00000295550 IPO7O95373 1038 aaKnown RBP12.03□□□□□ -0.48
COL6A3-201ENST00000295550 ABCC5O15440 1437 aa12.03□□□□□ -0.48
COL6A3-201ENST00000295550 PNISRQ8TF01 805 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms