RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 TEFQ10587 303 aa15.78■□□□□ 0.12
PTCD1-201ENST00000292478 WASHC2AQ641Q2 1341 aa15.78■□□□□ 0.12
PTCD1-201ENST00000292478 LRRFIP1Q32MZ4 808 aaKnown RBP15.78■□□□□ 0.12
PTCD1-201ENST00000292478 HMGXB3Q12766 1538 aa15.78■□□□□ 0.12
PTCD1-201ENST00000292478 RIPK4P57078 832 aa15.78■□□□□ 0.12
PTCD1-201ENST00000292478 PLEKHH2Q8IVE3 1493 aa15.78■□□□□ 0.12
PTCD1-201ENST00000292478 NUTM2FA1L443 756 aa15.77■□□□□ 0.12
PTCD1-201ENST00000292478 REC8O95072 547 aa15.77■□□□□ 0.12
PTCD1-201ENST00000292478 BCL2L13Q9BXK5 485 aa15.77■□□□□ 0.12
PTCD1-201ENST00000292478 GNAI1P63096 354 aa15.77■□□□□ 0.11
PTCD1-201ENST00000292478 RUFY2Q8WXA3 655 aa15.77■□□□□ 0.11
PTCD1-201ENST00000292478 ARHGAP5Q13017 1502 aa15.76■□□□□ 0.11
PTCD1-201ENST00000292478 NEXNQ0ZGT2 675 aa15.76■□□□□ 0.11
PTCD1-201ENST00000292478 ELL2O00472 640 aaPredicted RBP15.75■□□□□ 0.11
PTCD1-201ENST00000292478 IFT140Q96RY7 1462 aa15.75■□□□□ 0.11
PTCD1-201ENST00000292478 SCAPERQ9BY12 1400 aa15.74■□□□□ 0.11
PTCD1-201ENST00000292478 RILPL2Q969X0 211 aa15.74■□□□□ 0.11
PTCD1-201ENST00000292478 MRC2Q9UBG0 1479 aa15.73■□□□□ 0.11
PTCD1-201ENST00000292478 CCDC9Q9Y3X0 531 aaKnown RBP15.73■□□□□ 0.11
PTCD1-201ENST00000292478 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.72■□□□□ 0.11
PTCD1-201ENST00000292478 DDX58O95786 925 aaKnown RBP15.72■□□□□ 0.11
PTCD1-201ENST00000292478 FOXD4L1Q9NU39 408 aa15.72■□□□□ 0.11
PTCD1-201ENST00000292478 HECW1Q76N89 1606 aa15.72■□□□□ 0.11
PTCD1-201ENST00000292478 TTC5Q8N0Z6 440 aa15.72■□□□□ 0.11
PTCD1-201ENST00000292478 CYB5RLQ6IPT4 315 aa15.72■□□□□ 0.11
PTCD1-201ENST00000292478 DIAPH3Q9NSV4 1193 aa15.72■□□□□ 0.11
PTCD1-201ENST00000292478 KIAA1107Q9UPP5 1409 aa15.72■□□□□ 0.11
PTCD1-201ENST00000292478 NOL8Q76FK4 1167 aaKnown RBP15.71■□□□□ 0.11
PTCD1-201ENST00000292478 HSP90AB4PQ58FF6 505 aa15.7■□□□□ 0.1
PTCD1-201ENST00000292478 SF3A1Q15459 793 aaKnown RBP15.7■□□□□ 0.1
PTCD1-201ENST00000292478 C9orf78Q9NZ63 289 aaPredicted RBP15.7■□□□□ 0.1
PTCD1-201ENST00000292478 TIAM1Q13009 1591 aa15.7■□□□□ 0.1
PTCD1-201ENST00000292478 H3BQV1 296 aa15.7■□□□□ 0.1
PTCD1-201ENST00000292478 IFFO2Q5TF58 517 aa15.7■□□□□ 0.1
PTCD1-201ENST00000292478 ZKSCAN1P17029 563 aaPredicted RBP15.69■□□□□ 0.1
PTCD1-201ENST00000292478 DDX49Q9Y6V7 483 aaKnown RBP15.69■□□□□ 0.1
PTCD1-201ENST00000292478 TROQ12816 1431 aaPredicted RBP15.69■□□□□ 0.1
PTCD1-201ENST00000292478 FAM184AQ8NB25 1140 aa15.69■□□□□ 0.1
PTCD1-201ENST00000292478 GTF2E1P29083 439 aaPredicted RBP15.68■□□□□ 0.1
PTCD1-201ENST00000292478 GSE1Q14687 1217 aa15.68■□□□□ 0.1
PTCD1-201ENST00000292478 TOPBP1Q92547 1522 aa15.68■□□□□ 0.1
PTCD1-201ENST00000292478 C9orf84Q5VXU9 1444 aa15.68■□□□□ 0.1
PTCD1-201ENST00000292478 PRG4Q92954 1404 aaPredicted RBP15.68■□□□□ 0.1
PTCD1-201ENST00000292478 CLSTN1O94985 981 aa15.68■□□□□ 0.1
PTCD1-201ENST00000292478 CHMP5Q9NZZ3 219 aa15.68■□□□□ 0.1
PTCD1-201ENST00000292478 INTS3Q68E01 1043 aaKnown RBP15.67■□□□□ 0.1
PTCD1-201ENST00000292478 FRAT2O75474 233 aaPredicted RBP15.66■□□□□ 0.1
PTCD1-201ENST00000292478 PSME1Q06323 249 aa15.66■□□□□ 0.1
PTCD1-201ENST00000292478 TOMM22Q9NS69 142 aa15.66■□□□□ 0.1
PTCD1-201ENST00000292478 IFIT2P09913 472 aaKnown RBP15.66■□□□□ 0.1
PTCD1-201ENST00000292478 FAM69CQ0P6D2 419 aa15.66■□□□□ 0.1
PTCD1-201ENST00000292478 CPLX2Q6PUV4 134 aaKnown RBP15.66■□□□□ 0.1
PTCD1-201ENST00000292478 RASSF8Q8NHQ8 419 aa15.66■□□□□ 0.1
PTCD1-201ENST00000292478 EVA1CP58658 441 aa15.66■□□□□ 0.1
PTCD1-201ENST00000292478 G3V3G9 751 aa15.65■□□□□ 0.1
PTCD1-201ENST00000292478 DCAF8Q5TAQ9 597 aa15.65■□□□□ 0.1
PTCD1-201ENST00000292478 RNF20Q5VTR2 975 aa15.65■□□□□ 0.1
PTCD1-201ENST00000292478 EIF2S2P20042 333 aaKnown RBP15.65■□□□□ 0.1
PTCD1-201ENST00000292478 FKBP5Q13451 457 aaPredicted RBP15.64■□□□□ 0.09
PTCD1-201ENST00000292478 SYNE3Q6ZMZ3 975 aa15.64■□□□□ 0.09
PTCD1-201ENST00000292478 TSPYL4Q9UJ04 414 aa15.64■□□□□ 0.09
PTCD1-201ENST00000292478 SUPT6HQ7KZ85 1726 aaKnown RBP15.64■□□□□ 0.09
PTCD1-201ENST00000292478 DNMBPQ6XZF7 1577 aa15.64■□□□□ 0.09
PTCD1-201ENST00000292478 POLA1P09884 1462 aaPredicted RBP15.64■□□□□ 0.09
PTCD1-201ENST00000292478 PPP2R1AP30153 589 aa15.63■□□□□ 0.09
PTCD1-201ENST00000292478 G3BP1Q13283 466 aaKnown RBP eCLIP15.63■□□□□ 0.09
PTCD1-201ENST00000292478 ADAMTS8Q9UP79 889 aa15.63■□□□□ 0.09
PTCD1-201ENST00000292478 ERC2O15083 957 aa15.63■□□□□ 0.09
PTCD1-201ENST00000292478 NUCB2P80303 420 aa15.63■□□□□ 0.09
PTCD1-201ENST00000292478 AKAP17AQ02040 695 aaKnown RBP15.63■□□□□ 0.09
PTCD1-201ENST00000292478 CC2D2AQ9P2K1 1620 aa15.62■□□□□ 0.09
PTCD1-201ENST00000292478 GGNBP2Q9H3C7 697 aa15.62■□□□□ 0.09
PTCD1-201ENST00000292478 CABP2Q9NPB3 220 aa15.62■□□□□ 0.09
PTCD1-201ENST00000292478 GOLGA6L19H0YKK7 550 aa15.61■□□□□ 0.09
PTCD1-201ENST00000292478 DAPK1P53355 1430 aa15.61■□□□□ 0.09
PTCD1-201ENST00000292478 NINLQ9Y2I6 1382 aa15.61■□□□□ 0.09
PTCD1-201ENST00000292478 SLC4A3P48751 1232 aa15.6■□□□□ 0.09
PTCD1-201ENST00000292478 MTHFSP49914 203 aa15.6■□□□□ 0.09
PTCD1-201ENST00000292478 AFAP1Q8N556 730 aa15.6■□□□□ 0.09
PTCD1-201ENST00000292478 TPM3P06753 285 aa15.6■□□□□ 0.09
PTCD1-201ENST00000292478 FOXD4L5Q5VV16 416 aaPredicted RBP15.6■□□□□ 0.09
PTCD1-201ENST00000292478 FOXD4L4Q8WXT5 416 aaPredicted RBP15.6■□□□□ 0.09
PTCD1-201ENST00000292478 CFAP70Q5T0N1 1121 aa15.6■□□□□ 0.09
PTCD1-201ENST00000292478 PDE3AQ14432 1141 aa15.59■□□□□ 0.09
PTCD1-201ENST00000292478 ANO2Q9NQ90 1003 aa15.59■□□□□ 0.09
PTCD1-201ENST00000292478 CT47B1P0C2W7 299 aaPredicted RBP15.59■□□□□ 0.09
PTCD1-201ENST00000292478 TCP11L2Q8N4U5 519 aa15.59■□□□□ 0.09
PTCD1-201ENST00000292478 CDC45O75419 566 aa15.59■□□□□ 0.09
PTCD1-201ENST00000292478 C22orf23Q9BZE7 217 aa15.59■□□□□ 0.09
PTCD1-201ENST00000292478 RPGRIP1LQ68CZ1 1315 aa15.59■□□□□ 0.09
PTCD1-201ENST00000292478 GAS2L2Q8NHY3 880 aa15.59■□□□□ 0.09
PTCD1-201ENST00000292478 BECN2A8MW95 431 aa15.58■□□□□ 0.09
PTCD1-201ENST00000292478 AMOTL1Q8IY63 956 aa15.58■□□□□ 0.09
PTCD1-201ENST00000292478 RAPGEF4Q8WZA2 1011 aa15.58■□□□□ 0.09
PTCD1-201ENST00000292478 HMOX1P09601 288 aa15.58■□□□□ 0.08
PTCD1-201ENST00000292478 TRIM29Q14134 588 aa15.58■□□□□ 0.08
PTCD1-201ENST00000292478 TMEM132EQ6IEE7 984 aa15.58■□□□□ 0.08
PTCD1-201ENST00000292478 MARCH6O60337 910 aa15.57■□□□□ 0.08
PTCD1-201ENST00000292478 NOC3LQ8WTT2 800 aaKnown RBP15.57■□□□□ 0.08
PTCD1-201ENST00000292478 GNAI3P08754 354 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms