RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CFAP74Q9C0B2 1584 aa26.98■■□□□ 1.91
VPS53-201ENST00000291074 FRMPD1Q5SYB0 1578 aa26.97■■□□□ 1.91
VPS53-201ENST00000291074 NEURL4Q96JN8 1562 aa26.97■■□□□ 1.91
VPS53-201ENST00000291074 ADGRF5Q8IZF2 1346 aa26.97■■□□□ 1.91
VPS53-201ENST00000291074 CFAP70Q5T0N1 1121 aa26.97■■□□□ 1.91
VPS53-201ENST00000291074 IFT172Q9UG01 1749 aa26.96■■□□□ 1.91
VPS53-201ENST00000291074 RNF123Q5XPI4 1314 aa26.96■■□□□ 1.91
VPS53-201ENST00000291074 LMTK2Q8IWU2 1503 aa26.94■■□□□ 1.9
VPS53-201ENST00000291074 HECW2Q9P2P5 1572 aa26.94■■□□□ 1.9
VPS53-201ENST00000291074 MYOM2P54296 1465 aa26.94■■□□□ 1.9
VPS53-201ENST00000291074 MYOM1P52179 1685 aa26.94■■□□□ 1.9
VPS53-201ENST00000291074 SYNMO15061 1565 aa26.93■■□□□ 1.9
VPS53-201ENST00000291074 GGT6Q6P531 493 aa26.92■■□□□ 1.9
VPS53-201ENST00000291074 MLH3Q9UHC1 1453 aa26.91■■□□□ 1.9
VPS53-201ENST00000291074 EIF3AQ14152 1382 aaKnown RBP26.91■■□□□ 1.9
VPS53-201ENST00000291074 KNSTRNQ9Y448 316 aa26.9■■□□□ 1.9
VPS53-201ENST00000291074 CHGAP10645 457 aaKnown RBP26.89■■□□□ 1.9
VPS53-201ENST00000291074 NPATQ14207 1427 aa26.89■■□□□ 1.89
VPS53-201ENST00000291074 CDCA8Q53HL2 280 aa26.88■■□□□ 1.89
VPS53-201ENST00000291074 KDM5AP29375 1690 aaKnown RBP26.87■■□□□ 1.89
VPS53-201ENST00000291074 ADGRB3O60242 1522 aa26.87■■□□□ 1.89
VPS53-201ENST00000291074 RAPGEF3O95398 923 aa26.86■■□□□ 1.89
VPS53-201ENST00000291074 AMER1Q5JTC6 1135 aaPredicted RBP26.86■■□□□ 1.89
VPS53-201ENST00000291074 NOS1P29475 1434 aa26.86■■□□□ 1.89
VPS53-201ENST00000291074 BLMP54132 1417 aaPredicted RBP26.86■■□□□ 1.89
VPS53-201ENST00000291074 NRXN1Q9ULB1 1477 aa26.83■■□□□ 1.88
VPS53-201ENST00000291074 PPP2R1AP30153 589 aa26.83■■□□□ 1.88
VPS53-201ENST00000291074 CDCA7LQ96GN5 454 aa26.83■■□□□ 1.88
VPS53-201ENST00000291074 ERVK-7P63135 1459 aa26.82■■□□□ 1.88
VPS53-201ENST00000291074 ASXL1Q8IXJ9 1541 aa26.82■■□□□ 1.88
VPS53-201ENST00000291074 ABCC3O15438 1527 aa26.81■■□□□ 1.88
VPS53-201ENST00000291074 PPLO60437 1756 aa26.8■■□□□ 1.88
VPS53-201ENST00000291074 ADAMTS8Q9UP79 889 aa26.78■■□□□ 1.88
VPS53-201ENST00000291074 NEO1Q92859 1461 aa26.78■■□□□ 1.88
VPS53-201ENST00000291074 SIGLEC1Q9BZZ2 1709 aa26.77■■□□□ 1.88
VPS53-201ENST00000291074 ZMYM4Q5VZL5 1548 aa26.77■■□□□ 1.88
VPS53-201ENST00000291074 CAMSAP1Q5T5Y3 1602 aa26.77■■□□□ 1.88
VPS53-201ENST00000291074 PDE3BQ13370 1112 aa26.77■■□□□ 1.88
VPS53-201ENST00000291074 RCAN3Q9UKA8 241 aa26.77■■□□□ 1.88
VPS53-201ENST00000291074 DIP2CQ9Y2E4 1556 aa26.76■■□□□ 1.87
VPS53-201ENST00000291074 RRP1P56182 461 aaKnown RBP26.76■■□□□ 1.87
VPS53-201ENST00000291074 CCDC136Q96JN2 1154 aa26.76■■□□□ 1.87
VPS53-201ENST00000291074 INSRP06213 1382 aa26.76■■□□□ 1.87
VPS53-201ENST00000291074 MYO3AQ8NEV4 1616 aa26.75■■□□□ 1.87
VPS53-201ENST00000291074 PIK3C2GO75747 1445 aa26.73■■□□□ 1.87
VPS53-201ENST00000291074 RICTORQ6R327 1708 aa26.72■■□□□ 1.87
VPS53-201ENST00000291074 SETBP1Q9Y6X0 1596 aa26.71■■□□□ 1.87
VPS53-201ENST00000291074 TRAK1Q9UPV9 953 aa26.71■■□□□ 1.87
VPS53-201ENST00000291074 WDR43Q15061 677 aaKnown RBP eCLIP26.69■■□□□ 1.86
VPS53-201ENST00000291074 TMEM132EQ6IEE7 984 aa26.69■■□□□ 1.86
VPS53-201ENST00000291074 CENPJQ9HC77 1338 aaPredicted RBP26.69■■□□□ 1.86
VPS53-201ENST00000291074 NUTM2DQ5VT03 806 aaPredicted RBP26.68■■□□□ 1.86
VPS53-201ENST00000291074 CARD14Q9BXL6 1004 aa26.68■■□□□ 1.86
VPS53-201ENST00000291074 NPC1L1Q9UHC9 1359 aa26.68■■□□□ 1.86
VPS53-201ENST00000291074 YEATS2Q9ULM3 1422 aa26.67■■□□□ 1.86
VPS53-201ENST00000291074 QRICH2Q9H0J4 1663 aa26.67■■□□□ 1.86
VPS53-201ENST00000291074 ADGRB1O14514 1584 aa26.67■■□□□ 1.86
VPS53-201ENST00000291074 C14orf93Q9H972 538 aaKnown RBP26.67■■□□□ 1.86
VPS53-201ENST00000291074 ZC3H13Q5T200 1668 aaKnown RBP26.67■■□□□ 1.86
VPS53-201ENST00000291074 EXOC6Q8TAG9 804 aa26.66■■□□□ 1.86
VPS53-201ENST00000291074 SBNO2Q9Y2G9 1366 aa26.65■■□□□ 1.86
VPS53-201ENST00000291074 PIK3C2BO00750 1634 aa26.65■■□□□ 1.86
VPS53-201ENST00000291074 SLC24A1O60721 1099 aa26.64■■□□□ 1.86
VPS53-201ENST00000291074 PLEKHH1Q9ULM0 1364 aa26.64■■□□□ 1.85
VPS53-201ENST00000291074 CYB5RLQ6IPT4 315 aa26.63■■□□□ 1.85
VPS53-201ENST00000291074 ANP32EQ9BTT0 268 aa26.62■■□□□ 1.85
VPS53-201ENST00000291074 MSH5O43196 834 aa26.62■■□□□ 1.85
VPS53-201ENST00000291074 RPGRIP1LQ68CZ1 1315 aa26.6■■□□□ 1.85
VPS53-201ENST00000291074 FANCIQ9NVI1 1328 aa26.6■■□□□ 1.85
VPS53-201ENST00000291074 PLIN1O60240 522 aa26.6■■□□□ 1.85
VPS53-201ENST00000291074 NEXMIFQ5QGS0 1516 aa26.59■■□□□ 1.85
VPS53-201ENST00000291074 CCDC146Q8IYE0 955 aa26.59■■□□□ 1.85
VPS53-201ENST00000291074 SENP3Q9H4L4 574 aaPredicted RBP26.58■■□□□ 1.85
VPS53-201ENST00000291074 GLI2P10070 1586 aa26.58■■□□□ 1.85
VPS53-201ENST00000291074 MYO5BQ9ULV0 1848 aa26.56■■□□□ 1.84
VPS53-201ENST00000291074 SLC12A5Q9H2X9 1139 aa26.55■■□□□ 1.84
VPS53-201ENST00000291074 IDI1Q13907 227 aa26.55■■□□□ 1.84
VPS53-201ENST00000291074 NSD3Q9BZ95 1437 aa26.54■■□□□ 1.84
VPS53-201ENST00000291074 ARHGAP31Q2M1Z3 1444 aa26.53■■□□□ 1.84
VPS53-201ENST00000291074 BCL11AQ9H165 835 aa26.53■■□□□ 1.84
VPS53-201ENST00000291074 ARHGEF28Q8N1W1 1705 aaKnown RBP26.53■■□□□ 1.84
VPS53-201ENST00000291074 ZNF521Q96K83 1311 aa26.53■■□□□ 1.84
VPS53-201ENST00000291074 VGFO15240 615 aaPredicted RBP26.51■■□□□ 1.83
VPS53-201ENST00000291074 DUSP27Q5VZP5 1158 aa26.5■■□□□ 1.83
VPS53-201ENST00000291074 PREX1Q8TCU6 1659 aa26.5■■□□□ 1.83
VPS53-201ENST00000291074 TSPOAP1O95153 1857 aa26.49■■□□□ 1.83
VPS53-201ENST00000291074 APAF1O14727 1248 aa26.48■■□□□ 1.83
VPS53-201ENST00000291074 TNNT2P45379 298 aaPredicted RBP26.47■■□□□ 1.83
VPS53-201ENST00000291074 GOLGA2Q08379 1002 aa26.47■■□□□ 1.83
VPS53-201ENST00000291074 TULP4Q9NRJ4 1543 aa26.47■■□□□ 1.83
VPS53-201ENST00000291074 RIMBP3CA6NJZ7 1639 aa26.47■■□□□ 1.83
VPS53-201ENST00000291074 RIMBP3BA6NNM3 1639 aa26.47■■□□□ 1.83
VPS53-201ENST00000291074 RIMBP3Q9UFD9 1639 aa26.47■■□□□ 1.83
VPS53-201ENST00000291074 FAM69CQ0P6D2 419 aa26.46■■□□□ 1.83
VPS53-201ENST00000291074 CRBNQ96SW2 442 aa26.46■■□□□ 1.83
VPS53-201ENST00000291074 SAFB2Q14151 953 aaKnown RBP eCLIP26.45■■□□□ 1.83
VPS53-201ENST00000291074 C20orf194Q5TEA3 1177 aa26.44■■□□□ 1.82
VPS53-201ENST00000291074 DIP2BQ9P265 1576 aa26.43■■□□□ 1.82
VPS53-201ENST00000291074 MORC1Q86VD1 984 aa26.43■■□□□ 1.82
VPS53-201ENST00000291074 TMEM131LA2VDJ0 1609 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms