RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 NEUROD1Q13562 356 aa12.08□□□□□ -0.48
PTPDC1-201ENST00000288976 ARHGAP23Q9P227 1491 aa12.08□□□□□ -0.48
PTPDC1-201ENST00000288976 PPP1R15AO75807 674 aaPredicted RBP12.07□□□□□ -0.48
PTPDC1-201ENST00000288976 FBXO31Q5XUX0 539 aaPredicted RBP12.06□□□□□ -0.48
PTPDC1-201ENST00000288976 L3MBTL2Q969R5 705 aa12.06□□□□□ -0.48
PTPDC1-201ENST00000288976 DIP2AQ14689 1571 aa12.06□□□□□ -0.48
PTPDC1-201ENST00000288976 PIK3C2GO75747 1445 aa12.05□□□□□ -0.48
PTPDC1-201ENST00000288976 SETD1BQ9UPS6 1966 aaKnown RBP12.05□□□□□ -0.48
PTPDC1-201ENST00000288976 SETD1AO15047 1707 aaKnown RBP12.05□□□□□ -0.48
PTPDC1-201ENST00000288976 IDI1Q13907 227 aa12.04□□□□□ -0.48
PTPDC1-201ENST00000288976 POLR1AO95602 1720 aaPredicted RBP12.04□□□□□ -0.48
PTPDC1-201ENST00000288976 IQGAP1P46940 1657 aa12.03□□□□□ -0.48
PTPDC1-201ENST00000288976 GPRASP1Q5JY77 1395 aa12.03□□□□□ -0.48
PTPDC1-201ENST00000288976 NRXN3Q9Y4C0 1643 aa12.03□□□□□ -0.48
PTPDC1-201ENST00000288976 RIMS2Q9UQ26 1411 aa12.02□□□□□ -0.48
PTPDC1-201ENST00000288976 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.01□□□□□ -0.49
PTPDC1-201ENST00000288976 TMEM2Q9UHN6 1383 aa12.01□□□□□ -0.49
PTPDC1-201ENST00000288976 KNDC1Q76NI1 1749 aa12.01□□□□□ -0.49
PTPDC1-201ENST00000288976 HDGFP51858 240 aaKnown RBP12□□□□□ -0.49
PTPDC1-201ENST00000288976 DCAF11Q8TEB1 546 aa11.99□□□□□ -0.49
PTPDC1-201ENST00000288976 ADGRB1O14514 1584 aa11.98□□□□□ -0.49
PTPDC1-201ENST00000288976 VGFO15240 615 aaPredicted RBP11.98□□□□□ -0.49
PTPDC1-201ENST00000288976 PLEKHG1Q9ULL1 1385 aa11.98□□□□□ -0.49
PTPDC1-201ENST00000288976 ALKQ9UM73 1620 aa11.98□□□□□ -0.49
PTPDC1-201ENST00000288976 MED14O60244 1454 aa11.98□□□□□ -0.49
PTPDC1-201ENST00000288976 KDM4FA0A1W2PPD8 638 aa11.97□□□□□ -0.49
PTPDC1-201ENST00000288976 CEBPAP49715 358 aaPredicted RBP11.97□□□□□ -0.49
PTPDC1-201ENST00000288976 SCAF11Q99590 1463 aaKnown RBP11.97□□□□□ -0.49
PTPDC1-201ENST00000288976 ZNF326Q5BKZ1 582 aaKnown RBP11.97□□□□□ -0.49
PTPDC1-201ENST00000288976 THEMISQ8N1K5 641 aaPredicted RBP11.97□□□□□ -0.49
PTPDC1-201ENST00000288976 DLC1Q96QB1 1528 aa11.96□□□□□ -0.5
PTPDC1-201ENST00000288976 STAG3Q9UJ98 1225 aa11.95□□□□□ -0.5
PTPDC1-201ENST00000288976 ASXL1Q8IXJ9 1541 aa11.95□□□□□ -0.5
PTPDC1-201ENST00000288976 NBPF8Q3BBV2 869 aa11.95□□□□□ -0.5
PTPDC1-201ENST00000288976 RGL3Q3MIN7 710 aa11.95□□□□□ -0.5
PTPDC1-201ENST00000288976 ARHGEF28Q8N1W1 1705 aaKnown RBP11.94□□□□□ -0.5
PTPDC1-201ENST00000288976 LMTK3Q96Q04 1460 aa11.94□□□□□ -0.5
PTPDC1-201ENST00000288976 ROCK2O75116 1388 aaKnown RBP11.94□□□□□ -0.5
PTPDC1-201ENST00000288976 CHGAP10645 457 aaKnown RBP11.93□□□□□ -0.5
PTPDC1-201ENST00000288976 C14orf93Q9H972 538 aaKnown RBP11.93□□□□□ -0.5
PTPDC1-201ENST00000288976 ADGRF5Q8IZF2 1346 aa11.93□□□□□ -0.5
PTPDC1-201ENST00000288976 CPS1P31327 1500 aa11.93□□□□□ -0.5
PTPDC1-201ENST00000288976 EIF3AQ14152 1382 aaKnown RBP11.92□□□□□ -0.5
PTPDC1-201ENST00000288976 XRN1Q8IZH2 1706 aaKnown RBP11.91□□□□□ -0.5
PTPDC1-201ENST00000288976 NWD1Q149M9 1564 aa11.91□□□□□ -0.5
PTPDC1-201ENST00000288976 EID1Q9Y6B2 187 aa11.91□□□□□ -0.5
PTPDC1-201ENST00000288976 PIK3R4Q99570 1358 aa11.91□□□□□ -0.5
PTPDC1-201ENST00000288976 BCANQ96GW7 911 aa11.9□□□□□ -0.5
PTPDC1-201ENST00000288976 TECPR2O15040 1411 aa11.9□□□□□ -0.5
PTPDC1-201ENST00000288976 ADAMTS13Q76LX8 1427 aa11.9□□□□□ -0.5
PTPDC1-201ENST00000288976 KDM2AQ9Y2K7 1162 aa11.9□□□□□ -0.5
PTPDC1-201ENST00000288976 QRICH2Q9H0J4 1663 aa11.89□□□□□ -0.51
PTPDC1-201ENST00000288976 USP47Q96K76 1375 aa11.88□□□□□ -0.51
PTPDC1-201ENST00000288976 CHD2O14647 1828 aaKnown RBP11.88□□□□□ -0.51
PTPDC1-201ENST00000288976 NPHP4O75161 1426 aaPredicted RBP11.87□□□□□ -0.51
PTPDC1-201ENST00000288976 STRCQ7RTU9 1775 aa11.87□□□□□ -0.51
PTPDC1-201ENST00000288976 SBNO2Q9Y2G9 1366 aa11.87□□□□□ -0.51
PTPDC1-201ENST00000288976 ADGRB2O60241 1585 aa11.87□□□□□ -0.51
PTPDC1-201ENST00000288976 LRPPRCP42704 1394 aaKnown RBP11.87□□□□□ -0.51
PTPDC1-201ENST00000288976 PTCH1Q13635 1447 aa11.86□□□□□ -0.51
PTPDC1-201ENST00000288976 YTHDC2Q9H6S0 1430 aaKnown RBP11.86□□□□□ -0.51
PTPDC1-201ENST00000288976 PELP1Q8IZL8 1130 aaKnown RBP11.86□□□□□ -0.51
PTPDC1-201ENST00000288976 EIF4G2P78344 907 aaKnown RBP eCLIP11.86□□□□□ -0.51
PTPDC1-201ENST00000288976 ANKLE2Q86XL3 938 aa11.86□□□□□ -0.51
PTPDC1-201ENST00000288976 CARD11Q9BXL7 1154 aa11.86□□□□□ -0.51
PTPDC1-201ENST00000288976 FAM135BQ49AJ0 1406 aa11.86□□□□□ -0.51
PTPDC1-201ENST00000288976 SLC24A1O60721 1099 aa11.85□□□□□ -0.51
PTPDC1-201ENST00000288976 SIRT1Q96EB6 747 aa11.85□□□□□ -0.51
PTPDC1-201ENST00000288976 LTKP29376 864 aa11.85□□□□□ -0.51
PTPDC1-201ENST00000288976 TXNDC2Q86VQ3 553 aa11.85□□□□□ -0.51
PTPDC1-201ENST00000288976 ABCC11Q96J66 1382 aa11.84□□□□□ -0.51
PTPDC1-201ENST00000288976 TBX22Q9Y458 520 aa11.84□□□□□ -0.51
PTPDC1-201ENST00000288976 CFAP70Q5T0N1 1121 aa11.83□□□□□ -0.51
PTPDC1-201ENST00000288976 NBPF1Q3BBV0 1214 aa11.82□□□□□ -0.52
PTPDC1-201ENST00000288976 NKTRP30414 1462 aaKnown RBP11.82□□□□□ -0.52
PTPDC1-201ENST00000288976 ZNF316A6NFI3 1004 aaPredicted RBP11.82□□□□□ -0.52
PTPDC1-201ENST00000288976 HSPA5P11021 654 aaKnown RBP11.82□□□□□ -0.52
PTPDC1-201ENST00000288976 METP08581 1390 aa11.8□□□□□ -0.52
PTPDC1-201ENST00000288976 NUTM2DQ5VT03 806 aaPredicted RBP11.79□□□□□ -0.52
PTPDC1-201ENST00000288976 PTPRUQ92729 1446 aa11.79□□□□□ -0.52
PTPDC1-201ENST00000288976 YTHDC1Q96MU7 727 aaKnown RBP11.79□□□□□ -0.52
PTPDC1-201ENST00000288976 MYOM1P52179 1685 aa11.78□□□□□ -0.52
PTPDC1-201ENST00000288976 PUS7Q96PZ0 661 aaKnown RBP11.78□□□□□ -0.52
PTPDC1-201ENST00000288976 NCOA3Q9Y6Q9 1424 aa11.77□□□□□ -0.52
PTPDC1-201ENST00000288976 CENPJQ9HC77 1338 aaPredicted RBP11.77□□□□□ -0.53
PTPDC1-201ENST00000288976 TULP4Q9NRJ4 1543 aa11.77□□□□□ -0.53
PTPDC1-201ENST00000288976 TOPAZ1Q8N9V7 1692 aa11.77□□□□□ -0.53
PTPDC1-201ENST00000288976 CDC42BPGQ6DT37 1551 aa11.77□□□□□ -0.53
PTPDC1-201ENST00000288976 TESK2Q96S53 571 aa11.76□□□□□ -0.53
PTPDC1-201ENST00000288976 STRCP1A6NGW2 1772 aa11.75□□□□□ -0.53
PTPDC1-201ENST00000288976 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.75□□□□□ -0.53
PTPDC1-201ENST00000288976 ITSN1Q15811 1721 aa11.75□□□□□ -0.53
PTPDC1-201ENST00000288976 NALCNQ8IZF0 1738 aa11.75□□□□□ -0.53
PTPDC1-201ENST00000288976 CCDC7Q96M83 1385 aa11.75□□□□□ -0.53
PTPDC1-201ENST00000288976 CDCA8Q53HL2 280 aa11.74□□□□□ -0.53
PTPDC1-201ENST00000288976 NCKAP5LQ9HCH0 1330 aa11.74□□□□□ -0.53
PTPDC1-201ENST00000288976 ST20-MTHFSA0A0A6YYL1 179 aa11.74□□□□□ -0.53
PTPDC1-201ENST00000288976 FMN2Q9NZ56 1722 aa11.74□□□□□ -0.53
PTPDC1-201ENST00000288976 NINLQ9Y2I6 1382 aa11.74□□□□□ -0.53
PTPDC1-201ENST00000288976 TMEM132EQ6IEE7 984 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms