RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 FOXD1Q16676 465 aa17.76■□□□□ 0.43
C9orf3-201ENST00000277198 BCANQ96GW7 911 aa17.76■□□□□ 0.43
C9orf3-201ENST00000277198 NEURL4Q96JN8 1562 aa17.76■□□□□ 0.43
C9orf3-201ENST00000277198 NUP155O75694 1391 aa17.76■□□□□ 0.43
C9orf3-201ENST00000277198 NBPF8Q3BBV2 869 aa17.75■□□□□ 0.43
C9orf3-201ENST00000277198 PRKRIP1Q9H875 184 aaPredicted RBP17.75■□□□□ 0.43
C9orf3-201ENST00000277198 NOS1P29475 1434 aa17.75■□□□□ 0.43
C9orf3-201ENST00000277198 PKD2Q13563 968 aa17.74■□□□□ 0.43
C9orf3-201ENST00000277198 IDI1Q13907 227 aa17.74■□□□□ 0.43
C9orf3-201ENST00000277198 THEMISQ8N1K5 641 aaPredicted RBP17.74■□□□□ 0.43
C9orf3-201ENST00000277198 TET3O43151 1660 aa17.73■□□□□ 0.43
C9orf3-201ENST00000277198 UBR1Q8IWV7 1749 aa17.73■□□□□ 0.43
C9orf3-201ENST00000277198 ZNF335Q9H4Z2 1342 aaPredicted RBP17.73■□□□□ 0.43
C9orf3-201ENST00000277198 PIK3C2BO00750 1634 aa17.73■□□□□ 0.43
C9orf3-201ENST00000277198 IQGAP3Q86VI3 1631 aa17.72■□□□□ 0.43
C9orf3-201ENST00000277198 C11orf95C9JLR9 678 aaPredicted RBP17.71■□□□□ 0.43
C9orf3-201ENST00000277198 E9PCH4 1651 aa17.71■□□□□ 0.43
C9orf3-201ENST00000277198 POLR1AO95602 1720 aaPredicted RBP17.71■□□□□ 0.43
C9orf3-201ENST00000277198 CERKQ8TCT0 537 aa17.7■□□□□ 0.42
C9orf3-201ENST00000277198 LTKP29376 864 aa17.7■□□□□ 0.42
C9orf3-201ENST00000277198 ANKLE2Q86XL3 938 aa17.7■□□□□ 0.42
C9orf3-201ENST00000277198 LTBP4Q8N2S1 1624 aa17.69■□□□□ 0.42
C9orf3-201ENST00000277198 KIF7Q2M1P5 1343 aa17.69■□□□□ 0.42
C9orf3-201ENST00000277198 NPHP4O75161 1426 aaPredicted RBP17.66■□□□□ 0.42
C9orf3-201ENST00000277198 ZBED9Q6R2W3 1325 aa17.66■□□□□ 0.42
C9orf3-201ENST00000277198 SENP3Q9H4L4 574 aaPredicted RBP17.66■□□□□ 0.42
C9orf3-201ENST00000277198 STAG3Q9UJ98 1225 aa17.66■□□□□ 0.42
C9orf3-201ENST00000277198 ARHGAP23Q9P227 1491 aa17.66■□□□□ 0.42
C9orf3-201ENST00000277198 SLIT1O75093 1534 aa17.64■□□□□ 0.42
C9orf3-201ENST00000277198 TMEM2Q9UHN6 1383 aa17.64■□□□□ 0.41
C9orf3-201ENST00000277198 MED14O60244 1454 aa17.64■□□□□ 0.41
C9orf3-201ENST00000277198 SCAF11Q99590 1463 aaKnown RBP17.64■□□□□ 0.41
C9orf3-201ENST00000277198 ADGRB3O60242 1522 aa17.64■□□□□ 0.41
C9orf3-201ENST00000277198 TXNDC2Q86VQ3 553 aa17.64■□□□□ 0.41
C9orf3-201ENST00000277198 FBXO41Q8TF61 875 aa17.64■□□□□ 0.41
C9orf3-201ENST00000277198 MRS2Q9HD23 443 aa17.64■□□□□ 0.41
C9orf3-201ENST00000277198 SLC52A1Q9NWF4 448 aa17.62■□□□□ 0.41
C9orf3-201ENST00000277198 ROCK2O75116 1388 aaKnown RBP17.62■□□□□ 0.41
C9orf3-201ENST00000277198 IQGAP1P46940 1657 aa17.62■□□□□ 0.41
C9orf3-201ENST00000277198 USP47Q96K76 1375 aa17.61■□□□□ 0.41
C9orf3-201ENST00000277198 ANP32EQ9BTT0 268 aa17.61■□□□□ 0.41
C9orf3-201ENST00000277198 RBM19Q9Y4C8 960 aaKnown RBP17.61■□□□□ 0.41
C9orf3-201ENST00000277198 CCDC184Q52MB2 194 aa17.6■□□□□ 0.41
C9orf3-201ENST00000277198 MYO5BQ9ULV0 1848 aa17.6■□□□□ 0.41
C9orf3-201ENST00000277198 CHGAP10645 457 aaKnown RBP17.6■□□□□ 0.41
C9orf3-201ENST00000277198 RALGAPBQ86X10 1494 aa17.59■□□□□ 0.41
C9orf3-201ENST00000277198 TMEM131LA2VDJ0 1609 aa17.59■□□□□ 0.41
C9orf3-201ENST00000277198 NUTM2DQ5VT03 806 aaPredicted RBP17.58■□□□□ 0.4
C9orf3-201ENST00000277198 KDM5AP29375 1690 aaKnown RBP17.57■□□□□ 0.4
C9orf3-201ENST00000277198 EID1Q9Y6B2 187 aa17.57■□□□□ 0.4
C9orf3-201ENST00000277198 PPP4R2Q9NY27 417 aa17.57■□□□□ 0.4
C9orf3-201ENST00000277198 ZFYVE9O95405 1425 aa17.56■□□□□ 0.4
C9orf3-201ENST00000277198 FAM9BQ8IZU0 186 aa17.56■□□□□ 0.4
C9orf3-201ENST00000277198 SPHKAPQ2M3C7 1700 aa17.55■□□□□ 0.4
C9orf3-201ENST00000277198 STRCP1A6NGW2 1772 aa17.55■□□□□ 0.4
C9orf3-201ENST00000277198 RIMS2Q9UQ26 1411 aa17.54■□□□□ 0.4
C9orf3-201ENST00000277198 SLC26A8Q96RN1 970 aa17.54■□□□□ 0.4
C9orf3-201ENST00000277198 CLTCL1P53675 1640 aa17.53■□□□□ 0.4
C9orf3-201ENST00000277198 KTN1Q86UP2 1357 aaKnown RBP17.53■□□□□ 0.4
C9orf3-201ENST00000277198 TRPM2O94759 1503 aa17.51■□□□□ 0.39
C9orf3-201ENST00000277198 SMG6Q86US8 1419 aaKnown RBP17.5■□□□□ 0.39
C9orf3-201ENST00000277198 CPS1P31327 1500 aa17.48■□□□□ 0.39
C9orf3-201ENST00000277198 CARD11Q9BXL7 1154 aa17.48■□□□□ 0.39
C9orf3-201ENST00000277198 FANCIQ9NVI1 1328 aa17.47■□□□□ 0.39
C9orf3-201ENST00000277198 IQSEC2Q5JU85 1478 aa17.47■□□□□ 0.39
C9orf3-201ENST00000277198 LRRC7Q96NW7 1537 aa17.47■□□□□ 0.39
C9orf3-201ENST00000277198 RBM33Q96EV2 1170 aaKnown RBP17.46■□□□□ 0.39
C9orf3-201ENST00000277198 PLEKHG1Q9ULL1 1385 aa17.46■□□□□ 0.39
C9orf3-201ENST00000277198 UBAP1LF5GYI3 381 aa17.46■□□□□ 0.39
C9orf3-201ENST00000277198 ZNF326Q5BKZ1 582 aaKnown RBP17.46■□□□□ 0.39
C9orf3-201ENST00000277198 IRX6P78412 446 aaPredicted RBP17.44■□□□□ 0.38
C9orf3-201ENST00000277198 ADAMTS13Q76LX8 1427 aa17.43■□□□□ 0.38
C9orf3-201ENST00000277198 RNF123Q5XPI4 1314 aa17.42■□□□□ 0.38
C9orf3-201ENST00000277198 RALBP1Q15311 655 aa17.42■□□□□ 0.38
C9orf3-201ENST00000277198 PNISRQ8TF01 805 aaKnown RBP17.42■□□□□ 0.38
C9orf3-201ENST00000277198 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.42■□□□□ 0.38
C9orf3-201ENST00000277198 NUDCQ9Y266 331 aa17.42■□□□□ 0.38
C9orf3-201ENST00000277198 ALKQ9UM73 1620 aa17.41■□□□□ 0.38
C9orf3-201ENST00000277198 BRD4O60885 1362 aaPredicted RBP17.41■□□□□ 0.38
C9orf3-201ENST00000277198 NEXMIFQ5QGS0 1516 aa17.41■□□□□ 0.38
C9orf3-201ENST00000277198 KCNA6P17658 529 aa17.4■□□□□ 0.38
C9orf3-201ENST00000277198 DCAF11Q8TEB1 546 aa17.4■□□□□ 0.38
C9orf3-201ENST00000277198 HDGFP51858 240 aaKnown RBP17.39■□□□□ 0.37
C9orf3-201ENST00000277198 PIP4K2BP78356 416 aa17.39■□□□□ 0.37
C9orf3-201ENST00000277198 NRXN3Q9Y4C0 1643 aa17.39■□□□□ 0.37
C9orf3-201ENST00000277198 CCDC144AA2RUR9 1427 aa17.39■□□□□ 0.37
C9orf3-201ENST00000277198 ST20-MTHFSA0A0A6YYL1 179 aa17.39■□□□□ 0.37
C9orf3-201ENST00000277198 TMC1Q8TDI8 760 aa17.39■□□□□ 0.37
C9orf3-201ENST00000277198 LRPPRCP42704 1394 aaKnown RBP17.38■□□□□ 0.37
C9orf3-201ENST00000277198 MYBBP1AQ9BQG0 1328 aaKnown RBP17.38■□□□□ 0.37
C9orf3-201ENST00000277198 TMEM94Q12767 1356 aa17.38■□□□□ 0.37
C9orf3-201ENST00000277198 GPRASP1Q5JY77 1395 aa17.38■□□□□ 0.37
C9orf3-201ENST00000277198 KIF1BO60333 1816 aa17.38■□□□□ 0.37
C9orf3-201ENST00000277198 XIRP1Q702N8 1843 aaKnown RBP17.38■□□□□ 0.37
C9orf3-201ENST00000277198 PRAG1Q86YV5 1406 aa17.37■□□□□ 0.37
C9orf3-201ENST00000277198 NWD1Q149M9 1564 aa17.37■□□□□ 0.37
C9orf3-201ENST00000277198 POLR3GLQ9BT43 218 aa17.37■□□□□ 0.37
C9orf3-201ENST00000277198 TBX22Q9Y458 520 aa17.37■□□□□ 0.37
C9orf3-201ENST00000277198 PTPRUQ92729 1446 aa17.36■□□□□ 0.37
C9orf3-201ENST00000277198 RGL3Q3MIN7 710 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms