RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PKD2Q13563 968 aa14.33□□□□□ -0.11
UPF3B-201ENST00000276201 NEURL4Q96JN8 1562 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 ADGRB3O60242 1522 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 SLC52A1Q9NWF4 448 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 DMRT2Q9Y5R5 561 aa14.33□□□□□ -0.12
UPF3B-201ENST00000276201 SPHKAPQ2M3C7 1700 aa14.32□□□□□ -0.12
UPF3B-201ENST00000276201 ARHGAP23Q9P227 1491 aa14.32□□□□□ -0.12
UPF3B-201ENST00000276201 SLIT1O75093 1534 aa14.31□□□□□ -0.12
UPF3B-201ENST00000276201 SIN3AQ96ST3 1273 aa14.31□□□□□ -0.12
UPF3B-201ENST00000276201 SLC4A1APQ9BWU0 796 aaKnown RBP14.31□□□□□ -0.12
UPF3B-201ENST00000276201 ANKLE2Q86XL3 938 aa14.3□□□□□ -0.12
UPF3B-201ENST00000276201 STAG3Q9UJ98 1225 aa14.3□□□□□ -0.12
UPF3B-201ENST00000276201 TMEM131LA2VDJ0 1609 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 TMEM2Q9UHN6 1383 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 TRPM2O94759 1503 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 MYO5BQ9ULV0 1848 aa14.29□□□□□ -0.12
UPF3B-201ENST00000276201 MED14O60244 1454 aa14.28□□□□□ -0.12
UPF3B-201ENST00000276201 SCAF11Q99590 1463 aaKnown RBP14.28□□□□□ -0.12
UPF3B-201ENST00000276201 BCANQ96GW7 911 aa14.27□□□□□ -0.12
UPF3B-201ENST00000276201 CLTCL1P53675 1640 aa14.27□□□□□ -0.12
UPF3B-201ENST00000276201 NPHP4O75161 1426 aaPredicted RBP14.27□□□□□ -0.13
UPF3B-201ENST00000276201 LTKP29376 864 aa14.26□□□□□ -0.13
UPF3B-201ENST00000276201 MPHOSPH9Q99550 1183 aa14.26□□□□□ -0.13
UPF3B-201ENST00000276201 FOXD1Q16676 465 aa14.26□□□□□ -0.13
UPF3B-201ENST00000276201 IQGAP1P46940 1657 aa14.25□□□□□ -0.13
UPF3B-201ENST00000276201 TXNDC2Q86VQ3 553 aa14.25□□□□□ -0.13
UPF3B-201ENST00000276201 TONSLQ96HA7 1378 aa14.25□□□□□ -0.13
UPF3B-201ENST00000276201 CHGAP10645 457 aaKnown RBP14.24□□□□□ -0.13
UPF3B-201ENST00000276201 ZFYVE9O95405 1425 aa14.24□□□□□ -0.13
UPF3B-201ENST00000276201 EID1Q9Y6B2 187 aa14.23□□□□□ -0.13
UPF3B-201ENST00000276201 RIMS2Q9UQ26 1411 aa14.23□□□□□ -0.13
UPF3B-201ENST00000276201 LTBP4Q8N2S1 1624 aa14.22□□□□□ -0.13
UPF3B-201ENST00000276201 ZNF335Q9H4Z2 1342 aaPredicted RBP14.22□□□□□ -0.13
UPF3B-201ENST00000276201 KIF1BO60333 1816 aa14.19□□□□□ -0.14
UPF3B-201ENST00000276201 MSH5O43196 834 aa14.18□□□□□ -0.14
UPF3B-201ENST00000276201 CERKQ8TCT0 537 aa14.17□□□□□ -0.14
UPF3B-201ENST00000276201 CCDC144AA2RUR9 1427 aa14.17□□□□□ -0.14
UPF3B-201ENST00000276201 PLEKHG1Q9ULL1 1385 aa14.17□□□□□ -0.14
UPF3B-201ENST00000276201 NUTM2DQ5VT03 806 aaPredicted RBP14.17□□□□□ -0.14
UPF3B-201ENST00000276201 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.16□□□□□ -0.14
UPF3B-201ENST00000276201 NEXMIFQ5QGS0 1516 aa14.16□□□□□ -0.14
UPF3B-201ENST00000276201 HDGFP51858 240 aaKnown RBP14.15□□□□□ -0.14
UPF3B-201ENST00000276201 ZNF326Q5BKZ1 582 aaKnown RBP14.15□□□□□ -0.14
UPF3B-201ENST00000276201 SENP3Q9H4L4 574 aaPredicted RBP14.15□□□□□ -0.14
UPF3B-201ENST00000276201 STRCP1A6NGW2 1772 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 SPATA31E1Q6ZUB1 1445 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 SLC26A8Q96RN1 970 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 PPP4R2Q9NY27 417 aa14.14□□□□□ -0.15
UPF3B-201ENST00000276201 ANKRD30BQ9BXX2 1392 aa14.13□□□□□ -0.15
UPF3B-201ENST00000276201 CPS1P31327 1500 aa14.12□□□□□ -0.15
UPF3B-201ENST00000276201 ADAMTS13Q76LX8 1427 aa14.12□□□□□ -0.15
UPF3B-201ENST00000276201 NRXN3Q9Y4C0 1643 aa14.11□□□□□ -0.15
UPF3B-201ENST00000276201 PPLO60437 1756 aa14.11□□□□□ -0.15
UPF3B-201ENST00000276201 IQSEC2Q5JU85 1478 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 DIP2AQ14689 1571 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 SETBP1Q9Y6X0 1596 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 RPGRIP1LQ68CZ1 1315 aa14.1□□□□□ -0.15
UPF3B-201ENST00000276201 NWD1Q149M9 1564 aa14.08□□□□□ -0.15
UPF3B-201ENST00000276201 HNRNPUQ00839 825 aaKnown RBP eCLIP14.08□□□□□ -0.16
UPF3B-201ENST00000276201 TBX22Q9Y458 520 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 IFT172Q9UG01 1749 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 RGL3Q3MIN7 710 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 LRRC7Q96NW7 1537 aa14.08□□□□□ -0.16
UPF3B-201ENST00000276201 WASHC2AQ641Q2 1341 aa14.07□□□□□ -0.16
UPF3B-201ENST00000276201 FBXO41Q8TF61 875 aa14.07□□□□□ -0.16
UPF3B-201ENST00000276201 KCNA6P17658 529 aa14.07□□□□□ -0.16
UPF3B-201ENST00000276201 HIRIP3Q9BW71 556 aaPredicted RBP14.07□□□□□ -0.16
UPF3B-201ENST00000276201 ZBED9Q6R2W3 1325 aa14.06□□□□□ -0.16
UPF3B-201ENST00000276201 CHD2O14647 1828 aaKnown RBP14.06□□□□□ -0.16
UPF3B-201ENST00000276201 VGFO15240 615 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-201ENST00000276201 ILDR1Q86SU0 546 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-201ENST00000276201 NKTRP30414 1462 aaKnown RBP14.04□□□□□ -0.16
UPF3B-201ENST00000276201 HSPA5P11021 654 aaKnown RBP14.04□□□□□ -0.16
UPF3B-201ENST00000276201 PIK3R4Q99570 1358 aa14.04□□□□□ -0.16
UPF3B-201ENST00000276201 ADGRF5Q8IZF2 1346 aa14.04□□□□□ -0.16
UPF3B-201ENST00000276201 PTPRUQ92729 1446 aa14.04□□□□□ -0.16
UPF3B-201ENST00000276201 SETD1AO15047 1707 aaKnown RBP14.03□□□□□ -0.16
UPF3B-201ENST00000276201 XIRP1Q702N8 1843 aaKnown RBP14.03□□□□□ -0.16
UPF3B-201ENST00000276201 ERICH6Q7L0X2 663 aa14.03□□□□□ -0.16
UPF3B-201ENST00000276201 METP08581 1390 aa14.03□□□□□ -0.16
UPF3B-201ENST00000276201 EIF4G2P78344 907 aaKnown RBP eCLIP14.03□□□□□ -0.162e-9■■■■■ 39.4
UPF3B-201ENST00000276201 CCDC7Q96M83 1385 aa14.02□□□□□ -0.16
UPF3B-201ENST00000276201 ALKQ9UM73 1620 aa14.02□□□□□ -0.16
UPF3B-201ENST00000276201 XRN1Q8IZH2 1706 aaKnown RBP14.01□□□□□ -0.17
UPF3B-201ENST00000276201 MYOM2P54296 1465 aa14.01□□□□□ -0.17
UPF3B-201ENST00000276201 TMEM94Q12767 1356 aa14□□□□□ -0.17
UPF3B-201ENST00000276201 NRXN1Q9ULB1 1477 aa14□□□□□ -0.17
UPF3B-201ENST00000276201 PIK3C2GO75747 1445 aa14□□□□□ -0.17
UPF3B-201ENST00000276201 PROSER2Q86WR7 435 aaPredicted RBP14□□□□□ -0.17
UPF3B-201ENST00000276201 RBM33Q96EV2 1170 aaKnown RBP13.99□□□□□ -0.17
UPF3B-201ENST00000276201 PRKRIP1Q9H875 184 aaPredicted RBP13.99□□□□□ -0.17
UPF3B-201ENST00000276201 SMG6Q86US8 1419 aaKnown RBP13.99□□□□□ -0.17
UPF3B-201ENST00000276201 UBAP1LF5GYI3 381 aa13.98□□□□□ -0.17
UPF3B-201ENST00000276201 AMOTL2Q9Y2J4 779 aa13.98□□□□□ -0.17
UPF3B-201ENST00000276201 RNF123Q5XPI4 1314 aa13.98□□□□□ -0.17
UPF3B-201ENST00000276201 ASXL1Q8IXJ9 1541 aa13.96□□□□□ -0.17
UPF3B-201ENST00000276201 DCAF11Q8TEB1 546 aa13.95□□□□□ -0.18
UPF3B-201ENST00000276201 PRAG1Q86YV5 1406 aa13.94□□□□□ -0.18
UPF3B-201ENST00000276201 TOM1O60784 492 aa13.94□□□□□ -0.18
UPF3B-201ENST00000276201 KDM2AQ9Y2K7 1162 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms