RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 SIGLEC1Q9BZZ2 1709 aa21.02■□□□□ 0.96
SF3B4-201ENST00000271628 TMF1P82094 1093 aa21.02■□□□□ 0.96
SF3B4-201ENST00000271628 PIK3C2BO00750 1634 aa21.02■□□□□ 0.96
SF3B4-201ENST00000271628 SLC52A1Q9NWF4 448 aa21.01■□□□□ 0.95
SF3B4-201ENST00000271628 NRXN1Q9ULB1 1477 aa21.01■□□□□ 0.95
SF3B4-201ENST00000271628 COL17A1Q9UMD9 1497 aaPredicted RBP21.01■□□□□ 0.95
SF3B4-201ENST00000271628 SLC24A1O60721 1099 aa21■□□□□ 0.95
SF3B4-201ENST00000271628 EIF3AQ14152 1382 aaKnown RBP21■□□□□ 0.95
SF3B4-201ENST00000271628 ADGRF5Q8IZF2 1346 aa21■□□□□ 0.95
SF3B4-201ENST00000271628 SUPT16HQ9Y5B9 1047 aaKnown RBP21■□□□□ 0.95
SF3B4-201ENST00000271628 SYNMO15061 1565 aa20.99■□□□□ 0.95
SF3B4-201ENST00000271628 PPLO60437 1756 aa20.98■□□□□ 0.95
SF3B4-201ENST00000271628 CFAP70Q5T0N1 1121 aa20.96■□□□□ 0.95
SF3B4-201ENST00000271628 ARHGEF40Q8TER5 1519 aa20.95■□□□□ 0.95
SF3B4-201ENST00000271628 PREX1Q8TCU6 1659 aa20.95■□□□□ 0.94
SF3B4-201ENST00000271628 CDCA8Q53HL2 280 aa20.95■□□□□ 0.94
SF3B4-201ENST00000271628 KTN1Q86UP2 1357 aaKnown RBP20.95■□□□□ 0.94
SF3B4-201ENST00000271628 DISP3Q9P2K9 1392 aa20.94■□□□□ 0.94
SF3B4-201ENST00000271628 IDI1Q13907 227 aa20.93■□□□□ 0.94
SF3B4-201ENST00000271628 SETBP1Q9Y6X0 1596 aa20.93■□□□□ 0.94
SF3B4-201ENST00000271628 VGFO15240 615 aaPredicted RBP20.93■□□□□ 0.94
SF3B4-201ENST00000271628 PIK3C2GO75747 1445 aa20.92■□□□□ 0.94
SF3B4-201ENST00000271628 MRS2Q9HD23 443 aa20.92■□□□□ 0.94
SF3B4-201ENST00000271628 C14orf93Q9H972 538 aaKnown RBP20.9■□□□□ 0.94
SF3B4-201ENST00000271628 RALBP1Q15311 655 aa20.89■□□□□ 0.93
SF3B4-201ENST00000271628 NEXMIFQ5QGS0 1516 aa20.88■□□□□ 0.93
SF3B4-201ENST00000271628 CLTCQ00610 1675 aaKnown RBP20.87■□□□□ 0.93
SF3B4-201ENST00000271628 ERVK-7P63135 1459 aa20.87■□□□□ 0.93
SF3B4-201ENST00000271628 ZFYVE9O95405 1425 aa20.87■□□□□ 0.93
SF3B4-201ENST00000271628 CCDC184Q52MB2 194 aa20.87■□□□□ 0.93
SF3B4-201ENST00000271628 PER1O15534 1290 aaPredicted RBP20.85■□□□□ 0.93
SF3B4-201ENST00000271628 TMEM131LA2VDJ0 1609 aa20.85■□□□□ 0.93
SF3B4-201ENST00000271628 FBXO31Q5XUX0 539 aaPredicted RBP20.84■□□□□ 0.93
SF3B4-201ENST00000271628 ESF1Q9H501 851 aaKnown RBP20.84■□□□□ 0.93
SF3B4-201ENST00000271628 MYO3AQ8NEV4 1616 aa20.84■□□□□ 0.93
SF3B4-201ENST00000271628 SBNO2Q9Y2G9 1366 aa20.84■□□□□ 0.93
SF3B4-201ENST00000271628 MYT1Q01538 1121 aa20.83■□□□□ 0.93
SF3B4-201ENST00000271628 HNRNPUQ00839 825 aaKnown RBP eCLIP20.82■□□□□ 0.92
SF3B4-201ENST00000271628 MLECQ14165 292 aa20.82■□□□□ 0.92
SF3B4-201ENST00000271628 PANK3Q9H999 370 aa20.82■□□□□ 0.92
SF3B4-201ENST00000271628 ADGRB1O14514 1584 aa20.82■□□□□ 0.92
SF3B4-201ENST00000271628 SPATA31D1Q6ZQQ2 1576 aa20.82■□□□□ 0.92
SF3B4-201ENST00000271628 MYBBP1AQ9BQG0 1328 aaKnown RBP20.81■□□□□ 0.92
SF3B4-201ENST00000271628 FAM9BQ8IZU0 186 aa20.81■□□□□ 0.92
SF3B4-201ENST00000271628 CNGB1Q14028 1251 aaPredicted RBP20.8■□□□□ 0.92
SF3B4-201ENST00000271628 MYO5BQ9ULV0 1848 aa20.8■□□□□ 0.92
SF3B4-201ENST00000271628 KDM5AP29375 1690 aaKnown RBP20.79■□□□□ 0.92
SF3B4-201ENST00000271628 CENPJQ9HC77 1338 aaPredicted RBP20.79■□□□□ 0.92
SF3B4-201ENST00000271628 STAG3Q9UJ98 1225 aa20.79■□□□□ 0.92
SF3B4-201ENST00000271628 TMC1Q8TDI8 760 aa20.78■□□□□ 0.92
SF3B4-201ENST00000271628 BRD4O60885 1362 aaPredicted RBP20.78■□□□□ 0.92
SF3B4-201ENST00000271628 PARD3Q8TEW0 1356 aa20.78■□□□□ 0.92
SF3B4-201ENST00000271628 TRAK1Q9UPV9 953 aa20.76■□□□□ 0.91
SF3B4-201ENST00000271628 ZMYM3Q14202 1370 aa20.76■□□□□ 0.91
SF3B4-201ENST00000271628 NUTM2DQ5VT03 806 aaPredicted RBP20.76■□□□□ 0.91
SF3B4-201ENST00000271628 TMEM132EQ6IEE7 984 aa20.74■□□□□ 0.91
SF3B4-201ENST00000271628 NLRP13Q86W25 1043 aa20.73■□□□□ 0.91
SF3B4-201ENST00000271628 KNSTRNQ9Y448 316 aa20.73■□□□□ 0.91
SF3B4-201ENST00000271628 PNISRQ8TF01 805 aaKnown RBP20.71■□□□□ 0.91
SF3B4-201ENST00000271628 MYOM1P52179 1685 aa20.71■□□□□ 0.91
SF3B4-201ENST00000271628 QRICH2Q9H0J4 1663 aa20.71■□□□□ 0.91
SF3B4-201ENST00000271628 A2ML1A8K2U0 1454 aa20.7■□□□□ 0.9
SF3B4-201ENST00000271628 TRHP20396 242 aaPredicted RBP20.69■□□□□ 0.9
SF3B4-201ENST00000271628 CC2D1BQ5T0F9 858 aaKnown RBP20.69■□□□□ 0.9
SF3B4-201ENST00000271628 ZBED9Q6R2W3 1325 aa20.69■□□□□ 0.9
SF3B4-201ENST00000271628 PUS7Q96PZ0 661 aaKnown RBP20.68■□□□□ 0.9
SF3B4-201ENST00000271628 ARHGEF28Q8N1W1 1705 aaKnown RBP20.67■□□□□ 0.9
SF3B4-201ENST00000271628 NPC1L1Q9UHC9 1359 aa20.67■□□□□ 0.9
SF3B4-201ENST00000271628 ASXL1Q8IXJ9 1541 aa20.65■□□□□ 0.9
SF3B4-201ENST00000271628 HDGFP51858 240 aaKnown RBP20.65■□□□□ 0.9
SF3B4-201ENST00000271628 FKBP8Q14318 412 aa20.65■□□□□ 0.9
SF3B4-201ENST00000271628 AMER1Q5JTC6 1135 aaPredicted RBP20.65■□□□□ 0.9
SF3B4-201ENST00000271628 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.65■□□□□ 0.9
SF3B4-201ENST00000271628 RIMS2Q9UQ26 1411 aa20.64■□□□□ 0.9
SF3B4-201ENST00000271628 LRPPRCP42704 1394 aaKnown RBP20.64■□□□□ 0.9
SF3B4-201ENST00000271628 NEFLP07196 543 aa20.64■□□□□ 0.89
SF3B4-201ENST00000271628 EVC2Q86UK5 1308 aa20.64■□□□□ 0.89
SF3B4-201ENST00000271628 ALKQ9UM73 1620 aa20.63■□□□□ 0.89
SF3B4-201ENST00000271628 TNRQ92752 1358 aa20.63■□□□□ 0.89
SF3B4-201ENST00000271628 YTHDC2Q9H6S0 1430 aaKnown RBP20.61■□□□□ 0.89
SF3B4-201ENST00000271628 TSHZ2Q9NRE2 1034 aa20.6■□□□□ 0.89
SF3B4-201ENST00000271628 STK26Q9P289 416 aa20.58■□□□□ 0.89
SF3B4-201ENST00000271628 PTPRMP28827 1452 aa20.57■□□□□ 0.88
SF3B4-201ENST00000271628 INSRP06213 1382 aa20.56■□□□□ 0.88
SF3B4-201ENST00000271628 POGKQ9P215 609 aa20.55■□□□□ 0.88
SF3B4-201ENST00000271628 NLRP1Q9C000 1473 aa20.55■□□□□ 0.88
SF3B4-201ENST00000271628 TULP4Q9NRJ4 1543 aa20.55■□□□□ 0.88
SF3B4-201ENST00000271628 PPP2R1AP30153 589 aa20.55■□□□□ 0.88
SF3B4-201ENST00000271628 CARD14Q9BXL6 1004 aa20.55■□□□□ 0.88
SF3B4-201ENST00000271628 PRAM1Q96QH2 718 aa20.54■□□□□ 0.88
SF3B4-201ENST00000271628 UBR1Q8IWV7 1749 aa20.53■□□□□ 0.88
SF3B4-201ENST00000271628 SLC12A5Q9H2X9 1139 aa20.53■□□□□ 0.88
SF3B4-201ENST00000271628 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
SF3B4-201ENST00000271628 NINLQ9Y2I6 1382 aa20.53■□□□□ 0.88
SF3B4-201ENST00000271628 DLC1Q96QB1 1528 aa20.53■□□□□ 0.88
SF3B4-201ENST00000271628 SETD1AO15047 1707 aaKnown RBP20.52■□□□□ 0.88
SF3B4-201ENST00000271628 TMEM2Q9UHN6 1383 aa20.52■□□□□ 0.88
SF3B4-201ENST00000271628 BCANQ96GW7 911 aa20.51■□□□□ 0.87
SF3B4-201ENST00000271628 FER1L4A9Z1Z3 1794 aa20.51■□□□□ 0.87
SF3B4-201ENST00000271628 SAFB2Q14151 953 aaKnown RBP eCLIP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms