RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 MROH2AA6NES4 1674 aa17.5■□□□□ 0.39
CPSF6-201ENST00000266679 TMC1Q8TDI8 760 aa17.5■□□□□ 0.39
CPSF6-201ENST00000266679 TRPM2O94759 1503 aa17.5■□□□□ 0.39
CPSF6-201ENST00000266679 MYBBP1AQ9BQG0 1328 aaKnown RBP17.49■□□□□ 0.39
CPSF6-201ENST00000266679 STRCQ7RTU9 1775 aa17.49■□□□□ 0.39
CPSF6-201ENST00000266679 CLTCL1P53675 1640 aa17.49■□□□□ 0.39
CPSF6-201ENST00000266679 SENP3-EIF4A1A0A087X0R7 540 aa17.48■□□□□ 0.39
CPSF6-201ENST00000266679 GGT6Q6P531 493 aa17.48■□□□□ 0.39
CPSF6-201ENST00000266679 TET3O43151 1660 aa17.48■□□□□ 0.39
CPSF6-201ENST00000266679 DISP3Q9P2K9 1392 aa17.48■□□□□ 0.39
CPSF6-201ENST00000266679 PNISRQ8TF01 805 aaKnown RBP17.48■□□□□ 0.39
CPSF6-201ENST00000266679 SMG6Q86US8 1419 aaKnown RBP17.47■□□□□ 0.39
CPSF6-201ENST00000266679 KTN1Q86UP2 1357 aaKnown RBP17.47■□□□□ 0.39
CPSF6-201ENST00000266679 RALBP1Q15311 655 aa17.47■□□□□ 0.39
CPSF6-201ENST00000266679 BRD4O60885 1362 aaPredicted RBP17.46■□□□□ 0.39
CPSF6-201ENST00000266679 ERICH6BQ5W0A0 696 aa17.45■□□□□ 0.38
CPSF6-201ENST00000266679 IQGAP1P46940 1657 aa17.44■□□□□ 0.38
CPSF6-201ENST00000266679 TESK2Q96S53 571 aa17.44■□□□□ 0.38
CPSF6-201ENST00000266679 PPP4R2Q9NY27 417 aa17.44■□□□□ 0.38
CPSF6-201ENST00000266679 ZMYM3Q14202 1370 aa17.43■□□□□ 0.38
CPSF6-201ENST00000266679 LRPPRCP42704 1394 aaKnown RBP17.43■□□□□ 0.38
CPSF6-201ENST00000266679 NUDCQ9Y266 331 aa17.43■□□□□ 0.38
CPSF6-201ENST00000266679 VWDEQ8N2E2 1590 aa17.42■□□□□ 0.38
CPSF6-201ENST00000266679 PARD3Q8TEW0 1356 aa17.42■□□□□ 0.38
CPSF6-201ENST00000266679 KANK1Q14678 1352 aa17.42■□□□□ 0.38
CPSF6-201ENST00000266679 MYO3AQ8NEV4 1616 aa17.42■□□□□ 0.38
CPSF6-201ENST00000266679 PTPRTO14522 1441 aa17.42■□□□□ 0.38
CPSF6-201ENST00000266679 MROH1Q8NDA8 1641 aa17.41■□□□□ 0.38
CPSF6-201ENST00000266679 RBM19Q9Y4C8 960 aaKnown RBP17.4■□□□□ 0.38
CPSF6-201ENST00000266679 KIF3BO15066 747 aa17.4■□□□□ 0.38
CPSF6-201ENST00000266679 TMF1P82094 1093 aa17.4■□□□□ 0.38
CPSF6-201ENST00000266679 PER1O15534 1290 aaPredicted RBP17.38■□□□□ 0.37
CPSF6-201ENST00000266679 NLRP13Q86W25 1043 aa17.38■□□□□ 0.37
CPSF6-201ENST00000266679 CC2D1BQ5T0F9 858 aaKnown RBP17.37■□□□□ 0.37
CPSF6-201ENST00000266679 PANK3Q9H999 370 aa17.37■□□□□ 0.37
CPSF6-201ENST00000266679 NPATQ14207 1427 aa17.37■□□□□ 0.37
CPSF6-201ENST00000266679 ZNF142P52746 1687 aaPredicted RBP17.36■□□□□ 0.37
CPSF6-201ENST00000266679 B4GALNT3Q6L9W6 998 aa17.36■□□□□ 0.37
CPSF6-201ENST00000266679 CAMSAP1Q5T5Y3 1602 aa17.36■□□□□ 0.37
CPSF6-201ENST00000266679 UGGT1Q9NYU2 1555 aa17.36■□□□□ 0.37
CPSF6-201ENST00000266679 KIF1BO60333 1816 aa17.35■□□□□ 0.37
CPSF6-201ENST00000266679 CEP170BQ9Y4F5 1589 aaPredicted RBP17.34■□□□□ 0.37
CPSF6-201ENST00000266679 EFCAB6Q5THR3 1501 aa17.34■□□□□ 0.37
CPSF6-201ENST00000266679 SCAF11Q99590 1463 aaKnown RBP17.33■□□□□ 0.37
CPSF6-201ENST00000266679 KIAA1210Q9ULL0 1709 aa17.33■□□□□ 0.37
CPSF6-201ENST00000266679 FBXO41Q8TF61 875 aa17.32■□□□□ 0.36
CPSF6-201ENST00000266679 CFAP65Q6ZU64 1925 aaKnown RBP17.31■□□□□ 0.36
CPSF6-201ENST00000266679 FBXO31Q5XUX0 539 aaPredicted RBP17.31■□□□□ 0.36
CPSF6-201ENST00000266679 WASHC2CQ9Y4E1 1318 aa17.31■□□□□ 0.36
CPSF6-201ENST00000266679 IFT172Q9UG01 1749 aa17.31■□□□□ 0.36
CPSF6-201ENST00000266679 RNF123Q5XPI4 1314 aa17.3■□□□□ 0.36
CPSF6-201ENST00000266679 NEURL4Q96JN8 1562 aa17.3■□□□□ 0.36
CPSF6-201ENST00000266679 SYNMO15061 1565 aa17.3■□□□□ 0.36
CPSF6-201ENST00000266679 SALL2Q9Y467 1007 aaPredicted RBP17.29■□□□□ 0.36
CPSF6-201ENST00000266679 MYOM1P52179 1685 aa17.29■□□□□ 0.36
CPSF6-201ENST00000266679 MYT1Q01538 1121 aa17.29■□□□□ 0.36
CPSF6-201ENST00000266679 STAC3Q96MF2 364 aa17.28■□□□□ 0.36
CPSF6-201ENST00000266679 NCKAP5LQ9HCH0 1330 aa17.28■□□□□ 0.36
CPSF6-201ENST00000266679 KDM5AP29375 1690 aaKnown RBP17.27■□□□□ 0.36
CPSF6-201ENST00000266679 ABCC3O15438 1527 aa17.27■□□□□ 0.36
CPSF6-201ENST00000266679 PPP6R1Q9UPN7 881 aa17.27■□□□□ 0.36
CPSF6-201ENST00000266679 MYOM2P54296 1465 aa17.27■□□□□ 0.35
CPSF6-201ENST00000266679 CERKQ8TCT0 537 aa17.27■□□□□ 0.35
CPSF6-201ENST00000266679 ZC3H13Q5T200 1668 aaKnown RBP17.26■□□□□ 0.35
CPSF6-201ENST00000266679 EIF3AQ14152 1382 aaKnown RBP17.26■□□□□ 0.35
CPSF6-201ENST00000266679 BLMP54132 1417 aaPredicted RBP17.25■□□□□ 0.35
CPSF6-201ENST00000266679 LMTK2Q8IWU2 1503 aa17.25■□□□□ 0.35
CPSF6-201ENST00000266679 TNRQ92752 1358 aa17.25■□□□□ 0.35
CPSF6-201ENST00000266679 DMRT2Q9Y5R5 561 aa17.24■□□□□ 0.35
CPSF6-201ENST00000266679 A2ML1A8K2U0 1454 aa17.24■□□□□ 0.35
CPSF6-201ENST00000266679 ADGRF5Q8IZF2 1346 aa17.23■□□□□ 0.35
CPSF6-201ENST00000266679 CDCA8Q53HL2 280 aa17.23■□□□□ 0.35
CPSF6-201ENST00000266679 CFAP70Q5T0N1 1121 aa17.23■□□□□ 0.35
CPSF6-201ENST00000266679 KNSTRNQ9Y448 316 aa17.23■□□□□ 0.35
CPSF6-201ENST00000266679 ADGRB3O60242 1522 aa17.22■□□□□ 0.35
CPSF6-201ENST00000266679 LTBP4Q8N2S1 1624 aa17.21■□□□□ 0.35
CPSF6-201ENST00000266679 ASXL1Q8IXJ9 1541 aa17.21■□□□□ 0.35
CPSF6-201ENST00000266679 CCDC136Q96JN2 1154 aa17.2■□□□□ 0.34
CPSF6-201ENST00000266679 ANP32EQ9BTT0 268 aa17.2■□□□□ 0.34
CPSF6-201ENST00000266679 PDE3BQ13370 1112 aa17.19■□□□□ 0.34
CPSF6-201ENST00000266679 INSRP06213 1382 aa17.19■□□□□ 0.34
CPSF6-201ENST00000266679 CHGAP10645 457 aaKnown RBP17.19■□□□□ 0.34
CPSF6-201ENST00000266679 RRP1P56182 461 aaKnown RBP17.19■□□□□ 0.34
CPSF6-201ENST00000266679 AMER1Q5JTC6 1135 aaPredicted RBP17.19■□□□□ 0.34
CPSF6-201ENST00000266679 PPLO60437 1756 aa17.19■□□□□ 0.34
CPSF6-201ENST00000266679 ERVK-7P63135 1459 aa17.18■□□□□ 0.34
CPSF6-201ENST00000266679 NOS1P29475 1434 aa17.18■□□□□ 0.34
CPSF6-201ENST00000266679 PPP2R1AP30153 589 aa17.18■□□□□ 0.34
CPSF6-201ENST00000266679 RCAN3Q9UKA8 241 aa17.18■□□□□ 0.34
CPSF6-201ENST00000266679 NRXN1Q9ULB1 1477 aa17.18■□□□□ 0.34
CPSF6-201ENST00000266679 SPATA31D1Q6ZQQ2 1576 aa17.18■□□□□ 0.34
CPSF6-201ENST00000266679 CDCA7LQ96GN5 454 aa17.17■□□□□ 0.34
CPSF6-201ENST00000266679 ZNF335Q9H4Z2 1342 aaPredicted RBP17.17■□□□□ 0.34
CPSF6-201ENST00000266679 FANCIQ9NVI1 1328 aa17.14■□□□□ 0.33
CPSF6-201ENST00000266679 ADAMTS8Q9UP79 889 aa17.14■□□□□ 0.33
CPSF6-201ENST00000266679 NLRP1Q9C000 1473 aa17.14■□□□□ 0.33
CPSF6-201ENST00000266679 SETBP1Q9Y6X0 1596 aa17.13■□□□□ 0.33
CPSF6-201ENST00000266679 UBR1Q8IWV7 1749 aa17.13■□□□□ 0.33
CPSF6-201ENST00000266679 WDR43Q15061 677 aaKnown RBP eCLIP17.13■□□□□ 0.33
CPSF6-201ENST00000266679 QRICH2Q9H0J4 1663 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms