RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ADGRB3O60242 1522 aa22.81■■□□□ 1.24
USP4-201ENST00000265560 CENPBP07199 599 aaPredicted RBP22.81■■□□□ 1.24
USP4-201ENST00000265560 CCDC184Q52MB2 194 aa22.81■■□□□ 1.24
USP4-201ENST00000265560 SLC52A1Q9NWF4 448 aa22.8■■□□□ 1.24
USP4-201ENST00000265560 AGLP35573 1532 aa22.8■■□□□ 1.24
USP4-201ENST00000265560 PREX1Q8TCU6 1659 aa22.8■■□□□ 1.24
USP4-201ENST00000265560 TRAK1Q9UPV9 953 aa22.8■■□□□ 1.24
USP4-201ENST00000265560 ZC3H13Q5T200 1668 aaKnown RBP22.79■■□□□ 1.24
USP4-201ENST00000265560 MYO5BQ9ULV0 1848 aa22.79■■□□□ 1.24
USP4-201ENST00000265560 ZMYM3Q14202 1370 aa22.77■■□□□ 1.24
USP4-201ENST00000265560 REREQ9P2R6 1566 aa22.76■■□□□ 1.23
USP4-201ENST00000265560 POLR1AO95602 1720 aaPredicted RBP22.76■■□□□ 1.23
USP4-201ENST00000265560 STAC3Q96MF2 364 aa22.76■■□□□ 1.23
USP4-201ENST00000265560 ERVK-7P63135 1459 aa22.75■■□□□ 1.23
USP4-201ENST00000265560 PRKRIP1Q9H875 184 aaPredicted RBP22.75■■□□□ 1.23
USP4-201ENST00000265560 PIK3C2BO00750 1634 aa22.74■■□□□ 1.23
USP4-201ENST00000265560 IFT172Q9UG01 1749 aa22.74■■□□□ 1.23
USP4-201ENST00000265560 STK26Q9P289 416 aa22.73■■□□□ 1.23
USP4-201ENST00000265560 VGFO15240 615 aaPredicted RBP22.73■■□□□ 1.23
USP4-201ENST00000265560 TMF1P82094 1093 aa22.73■■□□□ 1.23
USP4-201ENST00000265560 SAFB2Q14151 953 aaKnown RBP eCLIP22.73■■□□□ 1.23
USP4-201ENST00000265560 PPP6R1Q9UPN7 881 aa22.73■■□□□ 1.23
USP4-201ENST00000265560 MYOM2P54296 1465 aa22.72■■□□□ 1.23
USP4-201ENST00000265560 PPLO60437 1756 aa22.72■■□□□ 1.23
USP4-201ENST00000265560 C14orf93Q9H972 538 aaKnown RBP22.71■■□□□ 1.23
USP4-201ENST00000265560 SCAF11Q99590 1463 aaKnown RBP22.71■■□□□ 1.23
USP4-201ENST00000265560 RPGRIP1LQ68CZ1 1315 aa22.7■■□□□ 1.22
USP4-201ENST00000265560 CCER2I3L3R5 266 aa22.69■■□□□ 1.22
USP4-201ENST00000265560 PIK3C2GO75747 1445 aa22.69■■□□□ 1.22
USP4-201ENST00000265560 NEURL4Q96JN8 1562 aa22.68■■□□□ 1.22
USP4-201ENST00000265560 NEXMIFQ5QGS0 1516 aa22.67■■□□□ 1.22
USP4-201ENST00000265560 LAMC1P11047 1609 aa22.66■■□□□ 1.22
USP4-201ENST00000265560 PANK3Q9H999 370 aa22.66■■□□□ 1.22
USP4-201ENST00000265560 IQGAP1P46940 1657 aa22.66■■□□□ 1.22
USP4-201ENST00000265560 TMEM131LA2VDJ0 1609 aa22.66■■□□□ 1.22
USP4-201ENST00000265560 NRXN1Q9ULB1 1477 aa22.66■■□□□ 1.22
USP4-201ENST00000265560 SENP3-EIF4A1A0A087X0R7 540 aa22.65■■□□□ 1.22
USP4-201ENST00000265560 FAM9BQ8IZU0 186 aa22.64■■□□□ 1.21
USP4-201ENST00000265560 MRS2Q9HD23 443 aa22.64■■□□□ 1.21
USP4-201ENST00000265560 CC2D1BQ5T0F9 858 aaKnown RBP22.63■■□□□ 1.21
USP4-201ENST00000265560 BCANQ96GW7 911 aa22.61■■□□□ 1.21
USP4-201ENST00000265560 SCAF1Q9H7N4 1312 aaKnown RBP22.61■■□□□ 1.21
USP4-201ENST00000265560 EIF3AQ14152 1382 aaKnown RBP22.61■■□□□ 1.21
USP4-201ENST00000265560 CENPJQ9HC77 1338 aaPredicted RBP22.59■■□□□ 1.21
USP4-201ENST00000265560 KIAA1210Q9ULL0 1709 aa22.59■■□□□ 1.21
USP4-201ENST00000265560 SPATA31D1Q6ZQQ2 1576 aa22.59■■□□□ 1.21
USP4-201ENST00000265560 A2ML1A8K2U0 1454 aa22.59■■□□□ 1.21
USP4-201ENST00000265560 TNRQ92752 1358 aa22.58■■□□□ 1.21
USP4-201ENST00000265560 PER1O15534 1290 aaPredicted RBP22.57■■□□□ 1.2
USP4-201ENST00000265560 ADGRB1O14514 1584 aa22.56■■□□□ 1.2
USP4-201ENST00000265560 GTF3C3Q9Y5Q9 886 aa22.55■■□□□ 1.2
USP4-201ENST00000265560 RIMS2Q9UQ26 1411 aa22.55■■□□□ 1.2
USP4-201ENST00000265560 TMC1Q8TDI8 760 aa22.54■■□□□ 1.2
USP4-201ENST00000265560 HNRNPUQ00839 825 aaKnown RBP eCLIP22.53■■□□□ 1.2
USP4-201ENST00000265560 MINK1Q8N4C8 1332 aaPredicted RBP22.51■■□□□ 1.19
USP4-201ENST00000265560 PRAM1Q96QH2 718 aa22.51■■□□□ 1.19
USP4-201ENST00000265560 CDCA8Q53HL2 280 aa22.49■■□□□ 1.19
USP4-201ENST00000265560 WAPLQ7Z5K2 1190 aa22.49■■□□□ 1.19
USP4-201ENST00000265560 CABP2Q9NPB3 220 aa22.49■■□□□ 1.19
USP4-201ENST00000265560 POGKQ9P215 609 aa22.49■■□□□ 1.19
USP4-201ENST00000265560 SETBP1Q9Y6X0 1596 aa22.49■■□□□ 1.19
USP4-201ENST00000265560 SLC12A5Q9H2X9 1139 aa22.48■■□□□ 1.19
USP4-201ENST00000265560 ASXL1Q8IXJ9 1541 aa22.48■■□□□ 1.19
USP4-201ENST00000265560 LTKP29376 864 aa22.48■■□□□ 1.19
USP4-201ENST00000265560 ZFYVE9O95405 1425 aa22.48■■□□□ 1.19
USP4-201ENST00000265560 KNSTRNQ9Y448 316 aa22.47■■□□□ 1.19
USP4-201ENST00000265560 FER1L4A9Z1Z3 1794 aa22.46■■□□□ 1.19
USP4-201ENST00000265560 ALKQ9UM73 1620 aa22.45■■□□□ 1.18
USP4-201ENST00000265560 C3P01024 1663 aa22.44■■□□□ 1.18
USP4-201ENST00000265560 SLC26A8Q96RN1 970 aa22.44■■□□□ 1.18
USP4-201ENST00000265560 KTN1Q86UP2 1357 aaKnown RBP22.44■■□□□ 1.18
USP4-201ENST00000265560 QRICH2Q9H0J4 1663 aa22.44■■□□□ 1.18
USP4-201ENST00000265560 YTHDC2Q9H6S0 1430 aaKnown RBP22.44■■□□□ 1.18
USP4-201ENST00000265560 TXNDC2Q86VQ3 553 aa22.43■■□□□ 1.18
USP4-201ENST00000265560 CARD14Q9BXL6 1004 aa22.43■■□□□ 1.18
USP4-201ENST00000265560 METP08581 1390 aa22.42■■□□□ 1.18
USP4-201ENST00000265560 SRPK2P78362 688 aaKnown RBP22.42■■□□□ 1.18
USP4-201ENST00000265560 PTPRMP28827 1452 aa22.41■■□□□ 1.18
USP4-201ENST00000265560 TMEM2Q9UHN6 1383 aa22.41■■□□□ 1.18
USP4-201ENST00000265560 KDM5AP29375 1690 aaKnown RBP22.4■■□□□ 1.18
USP4-201ENST00000265560 ARHGEF28Q8N1W1 1705 aaKnown RBP22.4■■□□□ 1.18
USP4-201ENST00000265560 PLEKHH1Q9ULM0 1364 aa22.4■■□□□ 1.18
USP4-201ENST00000265560 RALBP1Q15311 655 aa22.4■■□□□ 1.18
USP4-201ENST00000265560 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.4■■□□□ 1.18
USP4-201ENST00000265560 MYBBP1AQ9BQG0 1328 aaKnown RBP22.39■■□□□ 1.18
USP4-201ENST00000265560 UBR1Q8IWV7 1749 aa22.38■■□□□ 1.17
USP4-201ENST00000265560 AMER1Q5JTC6 1135 aaPredicted RBP22.38■■□□□ 1.17
USP4-201ENST00000265560 MYOM1P52179 1685 aa22.38■■□□□ 1.17
USP4-201ENST00000265560 EVC2Q86UK5 1308 aa22.37■■□□□ 1.17
USP4-201ENST00000265560 TNNT2P45379 298 aaPredicted RBP22.36■■□□□ 1.17
USP4-201ENST00000265560 MYO3AQ8NEV4 1616 aa22.36■■□□□ 1.17
USP4-201ENST00000265560 PARD3Q8TEW0 1356 aa22.36■■□□□ 1.17
USP4-201ENST00000265560 HDGFP51858 240 aaKnown RBP22.35■■□□□ 1.17
USP4-201ENST00000265560 SBNO2Q9Y2G9 1366 aa22.35■■□□□ 1.17
USP4-201ENST00000265560 RIMS1Q86UR5 1692 aaKnown RBP22.35■■□□□ 1.17
USP4-201ENST00000265560 PNISRQ8TF01 805 aaKnown RBP22.35■■□□□ 1.17
USP4-201ENST00000265560 TULP4Q9NRJ4 1543 aa22.33■■□□□ 1.17
USP4-201ENST00000265560 SALL2Q9Y467 1007 aaPredicted RBP22.33■■□□□ 1.17
USP4-201ENST00000265560 EID1Q9Y6B2 187 aa22.33■■□□□ 1.17
USP4-201ENST00000265560 SLC24A1O60721 1099 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms