RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RCAN3Q9UKA8 241 aa13.41□□□□□ -0.26
LIG3-201ENST00000262327 MROH1Q8NDA8 1641 aa13.41□□□□□ -0.26
LIG3-201ENST00000262327 ARID4BQ4LE39 1312 aaPredicted RBP13.41□□□□□ -0.26
LIG3-201ENST00000262327 ATP10AO60312 1499 aa13.4□□□□□ -0.26
LIG3-201ENST00000262327 RALBP1Q15311 655 aa13.4□□□□□ -0.26
LIG3-201ENST00000262327 UHRF1BP1Q6BDS2 1440 aa13.39□□□□□ -0.27
LIG3-201ENST00000262327 REREQ9P2R6 1566 aa13.39□□□□□ -0.27
LIG3-201ENST00000262327 TET3O43151 1660 aa13.39□□□□□ -0.27
LIG3-201ENST00000262327 LMTK2Q8IWU2 1503 aa13.39□□□□□ -0.27
LIG3-201ENST00000262327 YEATS2Q9ULM3 1422 aa13.39□□□□□ -0.27
LIG3-201ENST00000262327 IPO9Q96P70 1041 aaKnown RBP13.38□□□□□ -0.27
LIG3-201ENST00000262327 BRD4O60885 1362 aaPredicted RBP13.38□□□□□ -0.27
LIG3-201ENST00000262327 ZBTB47Q9UFB7 747 aaPredicted RBP13.38□□□□□ -0.27
LIG3-201ENST00000262327 LRPPRCP42704 1394 aaKnown RBP13.38□□□□□ -0.27
LIG3-201ENST00000262327 NLRP13Q86W25 1043 aa13.38□□□□□ -0.27
LIG3-201ENST00000262327 PANK3Q9H999 370 aa13.37□□□□□ -0.27
LIG3-201ENST00000262327 COL17A1Q9UMD9 1497 aaPredicted RBP13.37□□□□□ -0.27
LIG3-201ENST00000262327 KTN1Q86UP2 1357 aaKnown RBP13.36□□□□□ -0.27
LIG3-201ENST00000262327 PLA2R1Q13018 1463 aa13.35□□□□□ -0.27
LIG3-201ENST00000262327 AGLP35573 1532 aa13.35□□□□□ -0.27
LIG3-201ENST00000262327 CCDC144AA2RUR9 1427 aa13.35□□□□□ -0.27
LIG3-201ENST00000262327 E9PCH4 1651 aa13.35□□□□□ -0.27
LIG3-201ENST00000262327 PER1O15534 1290 aaPredicted RBP13.35□□□□□ -0.27
LIG3-201ENST00000262327 DISP3Q9P2K9 1392 aa13.35□□□□□ -0.27
LIG3-201ENST00000262327 PTPRTO14522 1441 aa13.34□□□□□ -0.27
LIG3-201ENST00000262327 LAS1LQ9Y4W2 734 aaKnown RBP13.33□□□□□ -0.27
LIG3-201ENST00000262327 EFCAB6Q5THR3 1501 aa13.33□□□□□ -0.28
LIG3-201ENST00000262327 ARHGEF40Q8TER5 1519 aa13.33□□□□□ -0.28
LIG3-201ENST00000262327 TRPM2O94759 1503 aa13.32□□□□□ -0.28
LIG3-201ENST00000262327 TRHP20396 242 aaPredicted RBP13.31□□□□□ -0.28
LIG3-201ENST00000262327 PDE4AP27815 886 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 CRBNQ96SW2 442 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 PPP6R1Q9UPN7 881 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 ZC3H13Q5T200 1668 aaKnown RBP13.31□□□□□ -0.28
LIG3-201ENST00000262327 ABCC3O15438 1527 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 PRAG1Q86YV5 1406 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 TESK2Q96S53 571 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 PARD3Q8TEW0 1356 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 C20orf194Q5TEA3 1177 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 GGT6Q6P531 493 aa13.31□□□□□ -0.28
LIG3-201ENST00000262327 SPHKAPQ2M3C7 1700 aa13.3□□□□□ -0.28
LIG3-201ENST00000262327 CEP152O94986 1710 aa13.3□□□□□ -0.28
LIG3-201ENST00000262327 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.3□□□□□ -0.28
LIG3-201ENST00000262327 RTL5Q5HYW3 569 aaPredicted RBP13.29□□□□□ -0.28
LIG3-201ENST00000262327 WASHC2CQ9Y4E1 1318 aa13.29□□□□□ -0.28
LIG3-201ENST00000262327 ADAMTS8Q9UP79 889 aa13.29□□□□□ -0.28
LIG3-201ENST00000262327 ARHGAP31Q2M1Z3 1444 aa13.28□□□□□ -0.28
LIG3-201ENST00000262327 NEURL4Q96JN8 1562 aa13.27□□□□□ -0.29
LIG3-201ENST00000262327 EIF5BO60841 1220 aaKnown RBP13.27□□□□□ -0.29
LIG3-201ENST00000262327 CAMSAP1Q5T5Y3 1602 aa13.27□□□□□ -0.29
LIG3-201ENST00000262327 TMF1P82094 1093 aa13.26□□□□□ -0.29
LIG3-201ENST00000262327 TCERG1O14776 1098 aaKnown RBP13.26□□□□□ -0.29
LIG3-201ENST00000262327 NPATQ14207 1427 aa13.25□□□□□ -0.29
LIG3-201ENST00000262327 PDE3BQ13370 1112 aa13.25□□□□□ -0.29
LIG3-201ENST00000262327 BACH2Q9BYV9 841 aa13.25□□□□□ -0.29
LIG3-201ENST00000262327 CLTCL1P53675 1640 aa13.24□□□□□ -0.29
LIG3-201ENST00000262327 SLC4A3P48751 1232 aa13.24□□□□□ -0.29
LIG3-201ENST00000262327 CCDC146Q8IYE0 955 aa13.24□□□□□ -0.29
LIG3-201ENST00000262327 STAC3Q96MF2 364 aa13.24□□□□□ -0.29
LIG3-201ENST00000262327 NOS1P29475 1434 aa13.23□□□□□ -0.29
LIG3-201ENST00000262327 KNSTRNQ9Y448 316 aa13.22□□□□□ -0.29
LIG3-201ENST00000262327 TRPM1Q7Z4N2 1603 aa13.22□□□□□ -0.29
LIG3-201ENST00000262327 SIGLEC1Q9BZZ2 1709 aa13.21□□□□□ -0.29
LIG3-201ENST00000262327 NEFMP07197 916 aa13.21□□□□□ -0.29
LIG3-201ENST00000262327 WDR43Q15061 677 aaKnown RBP eCLIP13.21□□□□□ -0.29
LIG3-201ENST00000262327 PPP2R1AP30153 589 aa13.2□□□□□ -0.3
LIG3-201ENST00000262327 RTN4Q9NQC3 1192 aaKnown RBP13.2□□□□□ -0.3
LIG3-201ENST00000262327 IL27Q8NEV9 243 aa13.2□□□□□ -0.3
LIG3-201ENST00000262327 GPRASP1Q5JY77 1395 aa13.19□□□□□ -0.3
LIG3-201ENST00000262327 PLEKHH1Q9ULM0 1364 aa13.19□□□□□ -0.3
LIG3-201ENST00000262327 KIF1BO60333 1816 aa13.18□□□□□ -0.3
LIG3-201ENST00000262327 RGS3P49796 1198 aa13.18□□□□□ -0.3
LIG3-201ENST00000262327 PIK3C2BO00750 1634 aa13.17□□□□□ -0.3
LIG3-201ENST00000262327 DUSP27Q5VZP5 1158 aa13.16□□□□□ -0.3
LIG3-201ENST00000262327 SYNMO15061 1565 aa13.16□□□□□ -0.3
LIG3-201ENST00000262327 UGGT1Q9NYU2 1555 aa13.16□□□□□ -0.3
LIG3-201ENST00000262327 SPINK5Q9NQ38 1064 aaPredicted RBP13.16□□□□□ -0.3
LIG3-201ENST00000262327 SLC52A1Q9NWF4 448 aa13.16□□□□□ -0.3
LIG3-201ENST00000262327 ADGRB3O60242 1522 aa13.16□□□□□ -0.3
LIG3-201ENST00000262327 BLMP54132 1417 aaPredicted RBP13.16□□□□□ -0.3
LIG3-201ENST00000262327 CLTCQ00610 1675 aaKnown RBP13.16□□□□□ -0.3
LIG3-201ENST00000262327 PREX1Q8TCU6 1659 aa13.16□□□□□ -0.3
LIG3-201ENST00000262327 MS4A1P11836 297 aa13.15□□□□□ -0.3
LIG3-201ENST00000262327 AMER1Q5JTC6 1135 aaPredicted RBP13.15□□□□□ -0.3
LIG3-201ENST00000262327 PKNOX2Q96KN3 472 aa13.15□□□□□ -0.3
LIG3-201ENST00000262327 ERVK-7P63135 1459 aa13.14□□□□□ -0.31
LIG3-201ENST00000262327 APAF1O14727 1248 aa13.14□□□□□ -0.31
LIG3-201ENST00000262327 SLC24A1O60721 1099 aa13.14□□□□□ -0.31
LIG3-201ENST00000262327 ESF1Q9H501 851 aaKnown RBP13.14□□□□□ -0.31
LIG3-201ENST00000262327 RPGRIP1LQ68CZ1 1315 aa13.14□□□□□ -0.31
LIG3-201ENST00000262327 MYOM2P54296 1465 aa13.14□□□□□ -0.31
LIG3-201ENST00000262327 GOLGA2Q08379 1002 aa13.14□□□□□ -0.31
LIG3-201ENST00000262327 BCAR3O75815 825 aa13.13□□□□□ -0.31
LIG3-201ENST00000262327 MLECQ14165 292 aa13.13□□□□□ -0.31
LIG3-201ENST00000262327 SPATA31D1Q6ZQQ2 1576 aa13.13□□□□□ -0.31
LIG3-201ENST00000262327 TNNT2P45379 298 aaPredicted RBP13.12□□□□□ -0.31
LIG3-201ENST00000262327 DMRT2Q9Y5R5 561 aa13.12□□□□□ -0.31
LIG3-201ENST00000262327 LAMC1P11047 1609 aa13.12□□□□□ -0.31
LIG3-201ENST00000262327 MADDQ8WXG6 1647 aa13.11□□□□□ -0.31
LIG3-201ENST00000262327 MROH2AA6NES4 1674 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms