RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 ARHGEF12Q9NZN5 1544 aa9.21□□□□□ -0.93
CSDE1-201ENST00000261443 TBC1D32Q96NH3 1257 aa9.21□□□□□ -0.93
CSDE1-201ENST00000261443 CDC42BPBQ9Y5S2 1711 aa9.21□□□□□ -0.93
CSDE1-201ENST00000261443 ERCC6Q03468 1493 aa9.21□□□□□ -0.94
CSDE1-201ENST00000261443 PANK3Q9H999 370 aa9.2□□□□□ -0.94
CSDE1-201ENST00000261443 BCAR3O75815 825 aa9.2□□□□□ -0.94
CSDE1-201ENST00000261443 SLFN5Q08AF3 891 aa9.2□□□□□ -0.94
CSDE1-201ENST00000261443 CHMP5Q9NZZ3 219 aa9.2□□□□□ -0.94
CSDE1-201ENST00000261443 ISY1Q9ULR0 285 aaKnown RBP9.2□□□□□ -0.94
CSDE1-201ENST00000261443 ZNF521Q96K83 1311 aa9.19□□□□□ -0.94
CSDE1-201ENST00000261443 CALD1Q05682 793 aaKnown RBP9.19□□□□□ -0.94
CSDE1-201ENST00000261443 SAMD9LQ8IVG5 1584 aa9.19□□□□□ -0.94
CSDE1-201ENST00000261443 KIAA1211Q6ZU35 1233 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 CGNL1Q0VF96 1302 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 ERCC6L2Q5T890 1561 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 CHD1O14646 1710 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 DDX11L8A8MPP1 907 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 JPH4Q96JJ6 628 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 KDM5DQ9BY66 1539 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 CLUAP1Q96AJ1 413 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 SHROOM2Q13796 1616 aa9.18□□□□□ -0.94
CSDE1-201ENST00000261443 NKTRP30414 1462 aaKnown RBP9.17□□□□□ -0.94
CSDE1-201ENST00000261443 CANXP27824 592 aaKnown RBP9.16□□□□□ -0.94
CSDE1-201ENST00000261443 SHANK2Q9UPX8 1470 aa9.16□□□□□ -0.94
CSDE1-201ENST00000261443 NUP155O75694 1391 aa9.16□□□□□ -0.94
CSDE1-201ENST00000261443 PDE3AQ14432 1141 aa9.16□□□□□ -0.94
CSDE1-201ENST00000261443 TRMT2AQ8IZ69 625 aaKnown RBP9.16□□□□□ -0.94
CSDE1-201ENST00000261443 COG6Q9Y2V7 657 aa9.16□□□□□ -0.94
CSDE1-201ENST00000261443 PTPRGP23470 1445 aa9.16□□□□□ -0.94
CSDE1-201ENST00000261443 PREX2Q70Z35 1606 aa9.16□□□□□ -0.94
CSDE1-201ENST00000261443 PRDM4Q9UKN5 801 aa9.16□□□□□ -0.94
CSDE1-201ENST00000261443 DISP3Q9P2K9 1392 aa9.15□□□□□ -0.94
CSDE1-201ENST00000261443 CHMP7Q8WUX9 453 aaPredicted RBP9.15□□□□□ -0.94
CSDE1-201ENST00000261443 SPINK5Q9NQ38 1064 aaPredicted RBP9.15□□□□□ -0.94
CSDE1-201ENST00000261443 COL17A1Q9UMD9 1497 aaPredicted RBP9.15□□□□□ -0.94
CSDE1-201ENST00000261443 TTC37Q6PGP7 1564 aa9.15□□□□□ -0.94
CSDE1-201ENST00000261443 PPP2R1AP30153 589 aa9.15□□□□□ -0.94
CSDE1-201ENST00000261443 RBM10P98175 930 aaKnown RBP9.15□□□□□ -0.94
CSDE1-201ENST00000261443 ARHGEF5Q12774 1597 aa9.15□□□□□ -0.95
CSDE1-201ENST00000261443 ANKRD30AQ9BXX3 1397 aa9.15□□□□□ -0.95
CSDE1-201ENST00000261443 NBPF1Q3BBV0 1214 aa9.14□□□□□ -0.95
CSDE1-201ENST00000261443 CCDC146Q8IYE0 955 aa9.14□□□□□ -0.95
CSDE1-201ENST00000261443 PANK1Q8TE04 598 aa9.14□□□□□ -0.95
CSDE1-201ENST00000261443 CFDP1Q9UEE9 299 aaPredicted RBP9.14□□□□□ -0.95
CSDE1-201ENST00000261443 ANKRD50Q9ULJ7 1429 aa9.14□□□□□ -0.95
CSDE1-201ENST00000261443 PMFBP1Q8TBY8 1022 aa9.14□□□□□ -0.95
CSDE1-201ENST00000261443 ZNF777Q9ULD5 760 aaPredicted RBP9.14□□□□□ -0.95
CSDE1-201ENST00000261443 GAS2L3Q86XJ1 694 aa9.14□□□□□ -0.95
CSDE1-201ENST00000261443 E9PSI1 815 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 TMF1P82094 1093 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 C22orf23Q9BZE7 217 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 CLASP1Q7Z460 1538 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 A0A0U1RQG5 324 aaPredicted RBP9.13□□□□□ -0.95
CSDE1-201ENST00000261443 TESK2Q96S53 571 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 PDZRN3Q9UPQ7 1066 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 C9orf84Q5VXU9 1444 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 TRPM1Q7Z4N2 1603 aa9.13□□□□□ -0.95
CSDE1-201ENST00000261443 APAF1O14727 1248 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 OFD1O75665 1012 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 HSCBQ8IWL3 235 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 KNSTRNQ9Y448 316 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 ZMYM3Q14202 1370 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 NINLQ9Y2I6 1382 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 CCDC173Q0VFZ6 552 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.12□□□□□ -0.95
CSDE1-201ENST00000261443 ZSCAN30Q86W11 494 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 MAP7D2Q96T17 732 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 CARMIL2Q6F5E8 1435 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 PRAG1Q86YV5 1406 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 ERBINQ96RT1 1412 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 MSNP26038 577 aaKnown RBP9.12□□□□□ -0.95
CSDE1-201ENST00000261443 MFAP1P55081 439 aaKnown RBP9.12□□□□□ -0.95
CSDE1-201ENST00000261443 ANP32BQ92688 251 aaKnown RBP9.12□□□□□ -0.95
CSDE1-201ENST00000261443 FAM13BQ9NYF5 915 aa9.12□□□□□ -0.95
CSDE1-201ENST00000261443 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.11□□□□□ -0.95
CSDE1-201ENST00000261443 RIPK4P57078 832 aa9.11□□□□□ -0.95
CSDE1-201ENST00000261443 FBLN2P98095 1184 aa9.11□□□□□ -0.95
CSDE1-201ENST00000261443 RGL3Q3MIN7 710 aa9.11□□□□□ -0.95
CSDE1-201ENST00000261443 PLA2R1Q13018 1463 aa9.11□□□□□ -0.95
CSDE1-201ENST00000261443 SKOR2Q2VWA4 1001 aaPredicted RBP9.1□□□□□ -0.95
CSDE1-201ENST00000261443 GBP4Q96PP9 640 aa9.1□□□□□ -0.95
CSDE1-201ENST00000261443 TERF1P54274 439 aa9.1□□□□□ -0.95
CSDE1-201ENST00000261443 ZNF692Q9BU19 519 aaPredicted RBP9.1□□□□□ -0.95
CSDE1-201ENST00000261443 PCDHB15Q9Y5E8 787 aa9.1□□□□□ -0.95
CSDE1-201ENST00000261443 TNPO1Q92973 898 aaKnown RBP9.1□□□□□ -0.95
CSDE1-201ENST00000261443 NASPP49321 788 aaPredicted RBP9.09□□□□□ -0.95
CSDE1-201ENST00000261443 PPP1R9BQ96SB3 815 aa9.09□□□□□ -0.95
CSDE1-201ENST00000261443 RWDD1Q9H446 243 aaPredicted RBP9.09□□□□□ -0.95
CSDE1-201ENST00000261443 UNC13BO14795 1591 aa9.09□□□□□ -0.95
CSDE1-201ENST00000261443 AAMPQ13685 434 aa9.09□□□□□ -0.95
CSDE1-201ENST00000261443 R3HCC1Q9Y3T6 440 aaKnown RBP9.09□□□□□ -0.95
CSDE1-201ENST00000261443 GPRASP1Q5JY77 1395 aa9.09□□□□□ -0.95
CSDE1-201ENST00000261443 MAST1Q9Y2H9 1570 aa9.09□□□□□ -0.95
CSDE1-201ENST00000261443 DMRT2Q9Y5R5 561 aa9.09□□□□□ -0.96
CSDE1-201ENST00000261443 SYCP2Q9BX26 1530 aa9.08□□□□□ -0.96
CSDE1-201ENST00000261443 PTMSP20962 102 aa9.08□□□□□ -0.96
CSDE1-201ENST00000261443 FAM135AQ9P2D6 1515 aa9.08□□□□□ -0.96
CSDE1-201ENST00000261443 RTEL1-TNFRSF6BF6WH68 1400 aa9.08□□□□□ -0.96
CSDE1-201ENST00000261443 CCDC144AA2RUR9 1427 aa9.07□□□□□ -0.96
CSDE1-201ENST00000261443 PRDM15P57071 1507 aaPredicted RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms