RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 PANK2Q9BZ23 570 aa9.68□□□□□ -0.86
GPNMB-201ENST00000258733 CCDC66A2RUB6 948 aa9.67□□□□□ -0.86
GPNMB-201ENST00000258733 KCTD17Q8N5Z5 321 aa9.67□□□□□ -0.86
GPNMB-201ENST00000258733 UQCRHLA0A096LP55 91 aa9.67□□□□□ -0.86
GPNMB-201ENST00000258733 UQCRHP07919 91 aa9.67□□□□□ -0.86
GPNMB-201ENST00000258733 ZNF771Q7L3S4 317 aaPredicted RBP9.67□□□□□ -0.86
GPNMB-201ENST00000258733 ITFG2Q969R8 447 aa9.67□□□□□ -0.86
GPNMB-201ENST00000258733 TSPAN18Q96SJ8 248 aa9.67□□□□□ -0.86
GPNMB-201ENST00000258733 KIF16BQ96L93 1317 aa9.67□□□□□ -0.86
GPNMB-201ENST00000258733 SMARCA2P51531 1590 aa9.66□□□□□ -0.86
GPNMB-201ENST00000258733 PIK3R5Q8WYR1 880 aa9.66□□□□□ -0.86
GPNMB-201ENST00000258733 ARHGEF1Q92888 912 aaKnown RBP9.66□□□□□ -0.86
GPNMB-201ENST00000258733 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.66□□□□□ -0.86
GPNMB-201ENST00000258733 MPHOSPH10O00566 681 aaKnown RBP9.66□□□□□ -0.86
GPNMB-201ENST00000258733 GTF2A1P52655 376 aaPredicted RBP9.66□□□□□ -0.86
GPNMB-201ENST00000258733 WDR62O43379 1518 aa9.66□□□□□ -0.86
GPNMB-201ENST00000258733 ZNF853P0CG23 659 aa9.65□□□□□ -0.86
GPNMB-201ENST00000258733 MYBPC2Q14324 1141 aa9.65□□□□□ -0.86
GPNMB-201ENST00000258733 KIF3AQ9Y496 699 aa9.65□□□□□ -0.86
GPNMB-201ENST00000258733 KIF21AQ7Z4S6 1674 aa9.65□□□□□ -0.86
GPNMB-201ENST00000258733 WRNQ14191 1432 aaPredicted RBP eCLIP9.65□□□□□ -0.87
GPNMB-201ENST00000258733 FSD2A1L4K1 749 aa9.65□□□□□ -0.87
GPNMB-201ENST00000258733 HDAC1Q13547 482 aaPredicted RBP9.65□□□□□ -0.87
GPNMB-201ENST00000258733 MYH16Q9H6N6 1097 aa9.65□□□□□ -0.87
GPNMB-201ENST00000258733 C1orf115Q9H7X2 142 aa9.65□□□□□ -0.87
GPNMB-201ENST00000258733 TNNT3P45378 269 aaPredicted RBP9.64□□□□□ -0.87
GPNMB-201ENST00000258733 ILDR1Q86SU0 546 aaPredicted RBP9.64□□□□□ -0.87
GPNMB-201ENST00000258733 DONSONQ9NYP3 566 aa9.64□□□□□ -0.87
GPNMB-201ENST00000258733 NRDCO43847 1150 aa9.64□□□□□ -0.87
GPNMB-201ENST00000258733 SCP2P22307 547 aa9.64□□□□□ -0.87
GPNMB-201ENST00000258733 TDO2P48775 406 aa9.64□□□□□ -0.87
GPNMB-201ENST00000258733 R3HCC1Q9Y3T6 440 aaKnown RBP9.64□□□□□ -0.87
GPNMB-201ENST00000258733 ZC3H12AQ5D1E8 599 aaKnown RBP9.63□□□□□ -0.87
GPNMB-201ENST00000258733 BRD1O95696 1058 aa9.62□□□□□ -0.87
GPNMB-201ENST00000258733 RIPOR2Q9Y4F9 1068 aa9.62□□□□□ -0.87
GPNMB-201ENST00000258733 ZBED9Q6R2W3 1325 aa9.62□□□□□ -0.87
GPNMB-201ENST00000258733 NESP48681 1621 aa9.62□□□□□ -0.87
GPNMB-201ENST00000258733 GOLGA6CA6NDK9 693 aa9.61□□□□□ -0.87
GPNMB-201ENST00000258733 GOLGA6BA6NDN3 693 aa9.61□□□□□ -0.87
GPNMB-201ENST00000258733 GOLGA6DP0CG33 693 aa9.61□□□□□ -0.87
GPNMB-201ENST00000258733 GOLGA6AQ9NYA3 693 aa9.61□□□□□ -0.87
GPNMB-201ENST00000258733 ARHGEF11O15085 1522 aa9.61□□□□□ -0.87
GPNMB-201ENST00000258733 KIF1CO43896 1103 aaKnown RBP9.61□□□□□ -0.87
GPNMB-201ENST00000258733 CCER2I3L3R5 266 aa9.61□□□□□ -0.87
GPNMB-201ENST00000258733 SETDB1Q15047 1291 aa9.61□□□□□ -0.87
GPNMB-201ENST00000258733 DNAJC21Q5F1R6 531 aaKnown RBP9.61□□□□□ -0.87
GPNMB-201ENST00000258733 DDX46Q7L014 1031 aaKnown RBP9.61□□□□□ -0.87
GPNMB-201ENST00000258733 PDS5BQ9NTI5 1447 aa9.6□□□□□ -0.87
GPNMB-201ENST00000258733 DHX16O60231 1041 aaKnown RBP9.6□□□□□ -0.87
GPNMB-201ENST00000258733 CCDC97Q96F63 343 aaPredicted RBP9.6□□□□□ -0.87
GPNMB-201ENST00000258733 CADPSQ9ULU8 1353 aa9.6□□□□□ -0.87
GPNMB-201ENST00000258733 TNNT1P13805 278 aa9.6□□□□□ -0.87
GPNMB-201ENST00000258733 MRE11P49959 708 aa9.6□□□□□ -0.87
GPNMB-201ENST00000258733 MFAP1P55081 439 aaKnown RBP9.6□□□□□ -0.87
GPNMB-201ENST00000258733 ATL2Q8NHH9 583 aa9.6□□□□□ -0.87
GPNMB-201ENST00000258733 SLC4A1APQ9BWU0 796 aaKnown RBP9.6□□□□□ -0.87
GPNMB-201ENST00000258733 CFAP65Q6ZU64 1925 aaKnown RBP9.6□□□□□ -0.87
GPNMB-201ENST00000258733 PAIP2Q9BPZ3 127 aaKnown RBP9.59□□□□□ -0.87
GPNMB-201ENST00000258733 PDE4AP27815 886 aa9.59□□□□□ -0.87
GPNMB-201ENST00000258733 C1QTNF12Q5T7M4 302 aa9.59□□□□□ -0.87
GPNMB-201ENST00000258733 MRC2Q9UBG0 1479 aa9.59□□□□□ -0.87
GPNMB-201ENST00000258733 CCDC189A1A4V9 331 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 NOP2P46087 812 aaKnown RBP9.58□□□□□ -0.88
GPNMB-201ENST00000258733 CCT2P78371 535 aaKnown RBP9.58□□□□□ -0.88
GPNMB-201ENST00000258733 BIRC2Q13490 618 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 CTR9Q6PD62 1173 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.58□□□□□ -0.88
GPNMB-201ENST00000258733 NBPF3Q9H094 633 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 CALCOCO1Q9P1Z2 691 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 FEZ2Q9UHY8 353 aaPredicted RBP9.58□□□□□ -0.88
GPNMB-201ENST00000258733 RPS6KL1Q9Y6S9 549 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 ATP2B3Q16720 1220 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 SDR16C5Q8N3Y7 309 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 MSL3Q8N5Y2 521 aaKnown RBP9.58□□□□□ -0.88
GPNMB-201ENST00000258733 FAM210AQ96ND0 272 aa9.58□□□□□ -0.88
GPNMB-201ENST00000258733 NME8Q8N427 588 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 BACH2Q9BYV9 841 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 BRMS1Q9HCU9 246 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 SSFA2P28290 1259 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 MKL1Q969V6 931 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 KLHL33A6NCF5 533 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 CALRP27797 417 aaKnown RBP9.57□□□□□ -0.88
GPNMB-201ENST00000258733 SLC4A3P48751 1232 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 LRCH2Q5VUJ6 765 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 ICE2Q659A1 982 aa9.57□□□□□ -0.88
GPNMB-201ENST00000258733 PROCA1Q8NCQ7 364 aaPredicted RBP9.56□□□□□ -0.88
GPNMB-201ENST00000258733 MNS1Q8NEH6 495 aa9.56□□□□□ -0.88
GPNMB-201ENST00000258733 MED4Q9NPJ6 270 aa9.56□□□□□ -0.88
GPNMB-201ENST00000258733 IGF1RP08069 1367 aa9.56□□□□□ -0.88
GPNMB-201ENST00000258733 PPP1R12AO14974 1030 aaPredicted RBP9.56□□□□□ -0.88
GPNMB-201ENST00000258733 ZSCAN30Q86W11 494 aa9.56□□□□□ -0.88
GPNMB-201ENST00000258733 PIAS4Q8N2W9 510 aaPredicted RBP9.56□□□□□ -0.88
GPNMB-201ENST00000258733 KDM4CQ9H3R0 1056 aa9.56□□□□□ -0.88
GPNMB-201ENST00000258733 CCDC88BA6NC98 1476 aa9.55□□□□□ -0.88
GPNMB-201ENST00000258733 COQ9O75208 318 aa9.55□□□□□ -0.88
GPNMB-201ENST00000258733 GUCY2CP25092 1073 aa9.55□□□□□ -0.88
GPNMB-201ENST00000258733 SLC26A8Q96RN1 970 aa9.55□□□□□ -0.88
GPNMB-201ENST00000258733 NOL10Q9BSC4 688 aaKnown RBP9.55□□□□□ -0.88
GPNMB-201ENST00000258733 RSPH14Q9UHP6 348 aa9.55□□□□□ -0.88
GPNMB-201ENST00000258733 SUFUQ9UMX1 484 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms